0.010911
0.000000
0.000000
0.000000
0.010660
0.000000
0.000000
0.000000
0.008462
0.00000
0.00000
0.00000
Schiffer, C.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.00
90.00
90.00
91.651
93.808
118.172
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
Y
149
N
C
Y
150
N
N
Y
151
N
C
Y
152
N
C
Y
153
N
N
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
S
C
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
N
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
S
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
O
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
R
C
N
316
N
O
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
N
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
N
384
N
C
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
doub
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
N
151
N
sing
Y
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
doub
Y
255
N
sing
Y
256
N
sing
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
doub
N
261
N
sing
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
UK
Structure
STRUE6
2005
0969-2126
10
369
381
10.1016/S0969-2126(02)00720-7
12005435
Substrate shape determines specificity of recognition for HIV-1 protease: analysis of crystal structures of six substrate complexes.
2002
10.2210/pdb1kj4/pdb
pdb_00001kj4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
MIRRORS
IMAGE PLATE
1999-08-26
RIGAKU
YALE MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
1.5418
ROTATING ANODE
RIGAKU
10800.777
POL polyprotein
3.4.23.16
HIV-1 PROTEASE, RESIDUES 57-155
D25N,Q7K
4
man
polymer
1161.264
gag polyprotein
MATRIX-CAPSID SUBSTRATE PEPTIDE, RESIDUES 127-136
2
syn
polymer
59.044
ACETATE ION
12
syn
non-polymer
18.015
water
43
nat
water
no
no
PQITLWKRPLVTIRIGGQLKEALLNTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
PQITLWKRPLVTIRIGGQLKEALLNTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
A,B,C,D
polypeptide(L)
no
no
VSQNYPIVQN
VSQNYPIVQN
P,S
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
POL
11676
Human immunodeficiency virus 1
562
Escherichia coli
1
2.79
55.88
VAPOR DIFFUSION, HANGING DROP
Ammonium Sulphate, SODIUM PHOSPHATE, SODIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2002-03-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HOW DOES A SYMMETRIC DIMER RECOGNIZE AN ASYMMETRIC SUBSTRATE? A SUBSTRATE COMPLEX OF HIV-1 PROTEASE
SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES
SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES
SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES
SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES
RCSB
Y
RCSB
2001-12-04
REL
ACT
ACETATE ION
HOH
water
1F7A
PDB ENTRY 1F7A
PDB
experimental model
ACT
504
3
ACT
ACT
504
A
ACT
506
3
ACT
ACT
506
A
ACT
512
3
ACT
ACT
512
A
ACT
521
3
ACT
ACT
521
A
ACT
501
3
ACT
ACT
501
B
ACT
502
3
ACT
ACT
502
B
ACT
522
3
ACT
ACT
522
B
ACT
516
3
ACT
ACT
516
C
ACT
524
3
ACT
ACT
524
C
ACT
511
3
ACT
ACT
511
D
ACT
518
3
ACT
ACT
518
D
ACT
523
3
ACT
ACT
523
D
WAT
2
4
HOH
HOH
522
A
WAT
31
4
HOH
HOH
523
A
WAT
32
4
HOH
HOH
524
A
WAT
37
4
HOH
HOH
525
A
WAT
40
4
HOH
HOH
526
A
WAT
44
4
HOH
HOH
527
A
WAT
49
4
HOH
HOH
528
A
WAT
55
4
HOH
HOH
529
A
WAT
56
4
HOH
HOH
530
A
WAT
61
4
HOH
HOH
531
A
WAT
6
4
HOH
HOH
523
B
WAT
8
4
HOH
HOH
524
B
WAT
9
4
HOH
HOH
525
B
WAT
46
4
HOH
HOH
526
B
WAT
50
4
HOH
HOH
527
B
WAT
60
4
HOH
HOH
528
B
WAT
62
4
HOH
HOH
529
B
WAT
7
4
HOH
HOH
525
C
WAT
12
4
HOH
HOH
526
C
WAT
14
4
HOH
HOH
527
C
WAT
38
4
HOH
HOH
528
C
WAT
39
4
HOH
HOH
529
C
WAT
45
4
HOH
HOH
530
C
WAT
47
4
HOH
HOH
531
C
WAT
53
4
HOH
HOH
532
C
WAT
54
4
HOH
HOH
533
C
WAT
57
4
HOH
HOH
534
C
WAT
58
4
HOH
HOH
535
C
WAT
13
4
HOH
HOH
524
D
WAT
24
4
HOH
HOH
525
D
WAT
25
4
HOH
HOH
526
D
WAT
26
4
HOH
HOH
527
D
WAT
27
4
HOH
HOH
528
D
WAT
35
4
HOH
HOH
529
D
WAT
36
4
HOH
HOH
530
D
WAT
41
4
HOH
HOH
531
D
WAT
42
4
HOH
HOH
532
D
WAT
43
4
HOH
HOH
533
D
WAT
48
4
HOH
HOH
534
D
WAT
52
4
HOH
HOH
535
D
WAT
59
4
HOH
HOH
536
D
WAT
63
4
HOH
HOH
537
D
WAT
33
4
HOH
HOH
33
S
PRO
1
n
1
PRO
1
A
ALA
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
ALA
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
ARG
14
n
14
ARG
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASN
25
n
25
ASN
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
ALA
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
ASN
37
n
37
ASN
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ALA
41
n
41
LYS
41
A
TRP
42
n
42
TRP
42
A
ALA
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
ALA
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
PRO
63
n
63
PRO
63
A
VAL
64
n
64
VAL
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
LYS
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
ARG
14
n
14
ARG
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASN
25
n
25
ASN
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
LEU
33
n
33
LEU
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
ASN
37
n
37
ASN
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ALA
41
n
41
LYS
41
B
TRP
42
n
42
TRP
42
B
ALA
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
ALA
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
ALA
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
PRO
63
n
63
PRO
63
B
VAL
64
n
64
VAL
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
CYS
67
n
67
CYS
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
ALA
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
CYS
95
n
95
CYS
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
PRO
1
n
1
PRO
1
C
GLN
2
n
2
GLN
2
C
ILE
3
n
3
ILE
3
C
THR
4
n
4
THR
4
C
LEU
5
n
5
LEU
5
C
TRP
6
n
6
TRP
6
C
LYS
7
n
7
LYS
7
C
ARG
8
n
8
ARG
8
C
PRO
9
n
9
PRO
9
C
LEU
10
n
10
LEU
10
C
VAL
11
n
11
VAL
11
C
THR
12
n
12
THR
12
C
ILE
13
n
13
ILE
13
C
ALA
14
n
14
ARG
14
C
ILE
15
n
15
ILE
15
C
GLY
16
n
16
GLY
16
C
GLY
17
n
17
GLY
17
C
GLN
18
n
18
GLN
18
C
LEU
19
n
19
LEU
19
C
LYS
20
n
20
LYS
20
C
GLU
21
n
21
GLU
21
C
ALA
22
n
22
ALA
22
C
LEU
23
n
23
LEU
23
C
LEU
24
n
24
LEU
24
C
ASN
25
n
25
ASN
25
C
THR
26
n
26
THR
26
C
GLY
27
n
27
GLY
27
C
ALA
28
n
28
ALA
28
C
ASP
29
n
29
ASP
29
C
ASP
30
n
30
ASP
30
C
THR
31
n
31
THR
31
C
VAL
32
n
32
VAL
32
C
LEU
33
n
33
LEU
33
C
ALA
34
n
34
GLU
34
C
GLU
35
n
35
GLU
35
C
MET
36
n
36
MET
36
C
ALA
37
n
37
ASN
37
C
LEU
38
n
38
LEU
38
C
PRO
39
n
39
PRO
39
C
GLY
40
n
40
GLY
40
C
ALA
41
n
41
LYS
41
C
TRP
42
n
42
TRP
42
C
ALA
43
n
43
LYS
43
C
PRO
44
n
44
PRO
44
C
LYS
45
n
45
LYS
45
C
MET
46
n
46
MET
46
C
ILE
47
n
47
ILE
47
C
GLY
48
n
48
GLY
48
C
GLY
49
n
49
GLY
49
C
ILE
50
n
50
ILE
50
C
GLY
51
n
51
GLY
51
C
GLY
52
n
52
GLY
52
C
PHE
53
n
53
PHE
53
C
ILE
54
n
54
ILE
54
C
LYS
55
n
55
LYS
55
C
VAL
56
n
56
VAL
56
C
ARG
57
n
57
ARG
57
C
GLN
58
n
58
GLN
58
C
TYR
59
n
59
TYR
59
C
ASP
60
n
60
ASP
60
C
GLN
61
n
61
GLN
61
C
ILE
62
n
62
ILE
62
C
PRO
63
n
63
PRO
63
C
VAL
64
n
64
VAL
64
C
ALA
65
n
65
GLU
65
C
ILE
66
n
66
ILE
66
C
CYS
67
n
67
CYS
67
C
GLY
68
n
68
GLY
68
C
HIS
69
n
69
HIS
69
C
ALA
70
n
70
LYS
70
C
ALA
71
n
71
ALA
71
C
ILE
72
n
72
ILE
72
C
GLY
73
n
73
GLY
73
C
THR
74
n
74
THR
74
C
VAL
75
n
75
VAL
75
C
LEU
76
n
76
LEU
76
C
VAL
77
n
77
VAL
77
C
GLY
78
n
78
GLY
78
C
PRO
79
n
79
PRO
79
C
THR
80
n
80
THR
80
C
PRO
81
n
81
PRO
81
C
VAL
82
n
82
VAL
82
C
ASN
83
n
83
ASN
83
C
ILE
84
n
84
ILE
84
C
ILE
85
n
85
ILE
85
C
GLY
86
n
86
GLY
86
C
ARG
87
n
87
ARG
87
C
ASN
88
n
88
ASN
88
C
LEU
89
n
89
LEU
89
C
LEU
90
n
90
LEU
90
C
THR
91
n
91
THR
91
C
GLN
92
n
92
GLN
92
C
ILE
93
n
93
ILE
93
C
GLY
94
n
94
GLY
94
C
CYS
95
n
95
CYS
95
C
THR
96
n
96
THR
96
C
LEU
97
n
97
LEU
97
C
ASN
98
n
98
ASN
98
C
PHE
99
n
99
PHE
99
C
PRO
1
n
1
PRO
1
D
GLN
2
n
2
GLN
2
D
ILE
3
n
3
ILE
3
D
THR
4
n
4
THR
4
D
LEU
5
n
5
LEU
5
D
TRP
6
n
6
TRP
6
D
ALA
7
n
7
LYS
7
D
ARG
8
n
8
ARG
8
D
PRO
9
n
9
PRO
9
D
LEU
10
n
10
LEU
10
D
VAL
11
n
11
VAL
11
D
THR
12
n
12
THR
12
D
ILE
13
n
13
ILE
13
D
ARG
14
n
14
ARG
14
D
ILE
15
n
15
ILE
15
D
GLY
16
n
16
GLY
16
D
GLY
17
n
17
GLY
17
D
GLN
18
n
18
GLN
18
D
LEU
19
n
19
LEU
19
D
LYS
20
n
20
LYS
20
D
GLU
21
n
21
GLU
21
D
ALA
22
n
22
ALA
22
D
LEU
23
n
23
LEU
23
D
LEU
24
n
24
LEU
24
D
ASN
25
n
25
ASN
25
D
THR
26
n
26
THR
26
D
GLY
27
n
27
GLY
27
D
ALA
28
n
28
ALA
28
D
ASP
29
n
29
ASP
29
D
ASP
30
n
30
ASP
30
D
THR
31
n
31
THR
31
D
VAL
32
n
32
VAL
32
D
LEU
33
n
33
LEU
33
D
GLU
34
n
34
GLU
34
D
GLU
35
n
35
GLU
35
D
MET
36
n
36
MET
36
D
ALA
37
n
37
ASN
37
D
LEU
38
n
38
LEU
38
D
PRO
39
n
39
PRO
39
D
GLY
40
n
40
GLY
40
D
ALA
41
n
41
LYS
41
D
TRP
42
n
42
TRP
42
D
ALA
43
n
43
LYS
43
D
PRO
44
n
44
PRO
44
D
ALA
45
n
45
LYS
45
D
MET
46
n
46
MET
46
D
ILE
47
n
47
ILE
47
D
GLY
48
n
48
GLY
48
D
GLY
49
n
49
GLY
49
D
ILE
50
n
50
ILE
50
D
GLY
51
n
51
GLY
51
D
GLY
52
n
52
GLY
52
D
PHE
53
n
53
PHE
53
D
ILE
54
n
54
ILE
54
D
ALA
55
n
55
LYS
55
D
VAL
56
n
56
VAL
56
D
ARG
57
n
57
ARG
57
D
GLN
58
n
58
GLN
58
D
TYR
59
n
59
TYR
59
D
ASP
60
n
60
ASP
60
D
GLN
61
n
61
GLN
61
D
ILE
62
n
62
ILE
62
D
PRO
63
n
63
PRO
63
D
VAL
64
n
64
VAL
64
D
GLU
65
n
65
GLU
65
D
ILE
66
n
66
ILE
66
D
CYS
67
n
67
CYS
67
D
GLY
68
n
68
GLY
68
D
HIS
69
n
69
HIS
69
D
ALA
70
n
70
LYS
70
D
ALA
71
n
71
ALA
71
D
ILE
72
n
72
ILE
72
D
GLY
73
n
73
GLY
73
D
THR
74
n
74
THR
74
D
VAL
75
n
75
VAL
75
D
LEU
76
n
76
LEU
76
D
VAL
77
n
77
VAL
77
D
GLY
78
n
78
GLY
78
D
PRO
79
n
79
PRO
79
D
THR
80
n
80
THR
80
D
PRO
81
n
81
PRO
81
D
VAL
82
n
82
VAL
82
D
ASN
83
n
83
ASN
83
D
ILE
84
n
84
ILE
84
D
ILE
85
n
85
ILE
85
D
GLY
86
n
86
GLY
86
D
ARG
87
n
87
ARG
87
D
ASN
88
n
88
ASN
88
D
LEU
89
n
89
LEU
89
D
LEU
90
n
90
LEU
90
D
THR
91
n
91
THR
91
D
GLN
92
n
92
GLN
92
D
ILE
93
n
93
ILE
93
D
GLY
94
n
94
GLY
94
D
CYS
95
n
95
CYS
95
D
THR
96
n
96
THR
96
D
LEU
97
n
97
LEU
97
D
ASN
98
n
98
ASN
98
D
PHE
99
n
99
PHE
99
D
VAL
1
n
1
VAL
1
P
SER
2
n
2
SER
2
P
GLN
3
n
3
GLN
3
P
ASN
4
n
4
ASN
4
P
TYR
5
n
5
TYR
5
P
PRO
6
n
6
PRO
6
P
ILE
7
n
7
ILE
7
P
VAL
8
n
8
VAL
8
P
ALA
9
n
9
GLN
9
P
n
10
10
P
VAL
1
n
1
VAL
1
S
SER
2
n
2
SER
2
S
GLN
3
n
3
GLN
3
S
ASN
4
n
4
ASN
4
S
TYR
5
n
5
TYR
5
S
PRO
6
n
6
PRO
6
S
ILE
7
n
7
ILE
7
S
VAL
8
n
8
VAL
8
S
n
9
9
S
n
10
10
S
author_and_software_defined_assembly
PISA
3
trimeric
author_and_software_defined_assembly
PISA
3
trimeric
software_defined_assembly
PISA
24
24-meric
6140
-36
9430
5930
-35
9020
67200
-359
54860
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
91.6510000000
93.8080000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_656
-x+1,y,-z+1
crystal symmetry operation
91.6510000000
0.0000000000
118.1720000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_566
x,-y+1,-z+1
crystal symmetry operation
0.0000000000
93.8080000000
118.1720000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
ASN
98
B
O
ASN
98
A
N
THR
96
A
N
THR
96
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
VAL
11
A
N
VAL
11
A
O
ALA
22
A
O
ALA
22
A
N
LEU
23
A
N
LEU
23
A
O
ILE
85
A
O
ILE
85
A
N
THR
31
A
N
THR
31
A
O
LEU
76
A
O
LEU
76
A
O
ALA
71
A
O
ALA
71
A
N
VAL
64
A
N
VAL
64
A
O
VAL
56
A
O
VAL
56
A
N
LYS
45
A
N
LYS
45
A
N
GLY
48
A
N
GLY
48
P
O
SER
2
E
O
SER
2
B
N
VAL
11
B
N
VAL
11
B
O
ALA
22
B
O
ALA
22
B
N
LEU
23
B
N
LEU
23
B
O
ILE
85
B
O
ILE
85
B
N
THR
31
B
N
THR
31
B
O
LEU
76
B
O
LEU
76
B
O
HIS
69
B
O
HIS
69
B
N
ILE
66
B
N
ILE
66
B
O
VAL
56
B
O
VAL
56
B
N
LYS
45
B
N
LYS
45
B
N
GLY
48
B
N
GLY
48
P
O
VAL
8
E
O
VAL
8
C
N
ILE
3
C
N
ILE
3
D
O
LEU
97
D
O
LEU
97
D
O
ASN
98
D
O
ASN
98
C
N
THR
96
C
N
THR
96
C
N
LEU
97
C
N
LEU
97
D
O
ILE
3
D
O
ILE
3
C
N
LEU
33
C
N
LEU
33
C
O
LEU
76
C
O
LEU
76
C
O
GLY
73
C
O
GLY
73
C
N
ILE
62
C
N
ILE
62
C
O
GLU
65
C
O
GLU
65
C
N
ARG
14
C
N
ARG
14
C
N
VAL
11
C
N
VAL
11
C
O
ALA
22
C
O
ALA
22
C
N
LEU
23
C
N
LEU
23
C
O
ILE
85
C
O
ILE
85
C
N
LEU
33
C
N
LEU
33
C
O
LEU
76
C
O
LEU
76
C
O
GLY
73
C
O
GLY
73
C
N
ILE
62
C
N
ILE
62
C
O
VAL
56
C
O
VAL
56
C
N
LYS
45
C
N
LYS
45
C
N
GLY
48
C
N
GLY
48
S
O
ASN
4
F
O
ASN
4
D
N
ILE
13
D
N
ILE
13
D
O
LYS
20
D
O
LYS
20
D
N
LEU
23
D
N
LEU
23
D
O
ILE
85
D
O
ILE
85
D
N
LEU
33
D
N
LEU
33
D
O
LEU
76
D
O
LEU
76
D
O
ALA
71
D
O
ALA
71
D
N
VAL
64
D
N
VAL
64
D
O
GLN
58
D
O
GLN
58
D
N
LYS
43
D
N
LYS
43
1
A
CG
GLN
2
A
CG
GLN
2
1
Y
1
A
CD
GLN
2
A
CD
GLN
2
1
Y
1
A
OE1
GLN
2
A
OE1
GLN
2
1
Y
1
A
NE2
GLN
2
A
NE2
GLN
2
1
Y
1
A
CG
LYS
7
A
CG
LYS
7
1
Y
1
A
CD
LYS
7
A
CD
LYS
7
1
Y
1
A
CE
LYS
7
A
CE
LYS
7
1
Y
1
A
NZ
LYS
7
A
NZ
LYS
7
1
Y
1
A
CG
GLU
35
A
CG
GLU
35
1
Y
1
A
CD
GLU
35
A
CD
GLU
35
1
Y
1
A
OE1
GLU
35
A
OE1
GLU
35
1
Y
1
A
OE2
GLU
35
A
OE2
GLU
35
1
Y
1
A
CG
LYS
41
A
CG
LYS
41
1
Y
1
A
CD
LYS
41
A
CD
LYS
41
1
Y
1
A
CE
LYS
41
A
CE
LYS
41
1
Y
1
A
NZ
LYS
41
A
NZ
LYS
41
1
Y
1
A
CG
LYS
43
A
CG
LYS
43
1
Y
1
A
CD
LYS
43
A
CD
LYS
43
1
Y
1
A
CE
LYS
43
A
CE
LYS
43
1
Y
1
A
NZ
LYS
43
A
NZ
LYS
43
1
Y
1
A
CG
LYS
55
A
CG
LYS
55
1
Y
1
A
CD
LYS
55
A
CD
LYS
55
1
Y
1
A
CE
LYS
55
A
CE
LYS
55
1
Y
1
A
NZ
LYS
55
A
NZ
LYS
55
1
Y
1
B
CG
LYS
41
B
CG
LYS
41
1
Y
1
B
CD
LYS
41
B
CD
LYS
41
1
Y
1
B
CE
LYS
41
B
CE
LYS
41
1
Y
1
B
NZ
LYS
41
B
NZ
LYS
41
1
Y
1
B
CG
LYS
43
B
CG
LYS
43
1
Y
1
B
CD
LYS
43
B
CD
LYS
43
1
Y
1
B
CE
LYS
43
B
CE
LYS
43
1
Y
1
B
NZ
LYS
43
B
NZ
LYS
43
1
Y
1
B
CG
LYS
55
B
CG
LYS
55
1
Y
1
B
CD
LYS
55
B
CD
LYS
55
1
Y
1
B
CE
LYS
55
B
CE
LYS
55
1
Y
1
B
NZ
LYS
55
B
NZ
LYS
55
1
Y
1
B
CG
GLN
61
B
CG
GLN
61
1
Y
1
B
CD
GLN
61
B
CD
GLN
61
1
Y
1
B
OE1
GLN
61
B
OE1
GLN
61
1
Y
1
B
NE2
GLN
61
B
NE2
GLN
61
1
Y
1
B
CG
LYS
70
B
CG
LYS
70
1
Y
1
B
CD
LYS
70
B
CD
LYS
70
1
Y
1
B
CE
LYS
70
B
CE
LYS
70
1
Y
1
B
NZ
LYS
70
B
NZ
LYS
70
1
Y
1
C
CG
ARG
14
C
CG
ARG
14
1
Y
1
C
CD
ARG
14
C
CD
ARG
14
1
Y
1
C
NE
ARG
14
C
NE
ARG
14
1
Y
1
C
CZ
ARG
14
C
CZ
ARG
14
1
Y
1
C
NH1
ARG
14
C
NH1
ARG
14
1
Y
1
C
NH2
ARG
14
C
NH2
ARG
14
1
Y
1
C
CG
GLU
34
C
CG
GLU
34
1
Y
1
C
CD
GLU
34
C
CD
GLU
34
1
Y
1
C
OE1
GLU
34
C
OE1
GLU
34
1
Y
1
C
OE2
GLU
34
C
OE2
GLU
34
1
Y
1
C
CG
ASN
37
C
CG
ASN
37
1
Y
1
C
OD1
ASN
37
C
OD1
ASN
37
1
Y
1
C
ND2
ASN
37
C
ND2
ASN
37
1
Y
1
C
CG
LYS
41
C
CG
LYS
41
1
Y
1
C
CD
LYS
41
C
CD
LYS
41
1
Y
1
C
CE
LYS
41
C
CE
LYS
41
1
Y
1
C
NZ
LYS
41
C
NZ
LYS
41
1
Y
1
C
CG
LYS
43
C
CG
LYS
43
1
Y
1
C
CD
LYS
43
C
CD
LYS
43
1
Y
1
C
CE
LYS
43
C
CE
LYS
43
1
Y
1
C
NZ
LYS
43
C
NZ
LYS
43
1
Y
1
C
CG
GLU
65
C
CG
GLU
65
1
Y
1
C
CD
GLU
65
C
CD
GLU
65
1
Y
1
C
OE1
GLU
65
C
OE1
GLU
65
1
Y
1
C
OE2
GLU
65
C
OE2
GLU
65
1
Y
1
C
CG
LYS
70
C
CG
LYS
70
1
Y
1
C
CD
LYS
70
C
CD
LYS
70
1
Y
1
C
CE
LYS
70
C
CE
LYS
70
1
Y
1
C
NZ
LYS
70
C
NZ
LYS
70
1
Y
1
D
CG
LYS
7
D
CG
LYS
7
1
Y
1
D
CD
LYS
7
D
CD
LYS
7
1
Y
1
D
CE
LYS
7
D
CE
LYS
7
1
Y
1
D
NZ
LYS
7
D
NZ
LYS
7
1
Y
1
D
CG
ASN
37
D
CG
ASN
37
1
Y
1
D
OD1
ASN
37
D
OD1
ASN
37
1
Y
1
D
ND2
ASN
37
D
ND2
ASN
37
1
Y
1
D
CG
LYS
41
D
CG
LYS
41
1
Y
1
D
CD
LYS
41
D
CD
LYS
41
1
Y
1
D
CE
LYS
41
D
CE
LYS
41
1
Y
1
D
NZ
LYS
41
D
NZ
LYS
41
1
Y
1
D
CG
LYS
43
D
CG
LYS
43
1
Y
1
D
CD
LYS
43
D
CD
LYS
43
1
Y
1
D
CE
LYS
43
D
CE
LYS
43
1
Y
1
D
NZ
LYS
43
D
NZ
LYS
43
1
Y
1
D
CG
LYS
45
D
CG
LYS
45
1
Y
1
D
CD
LYS
45
D
CD
LYS
45
1
Y
1
D
CE
LYS
45
D
CE
LYS
45
1
Y
1
D
NZ
LYS
45
D
NZ
LYS
45
1
Y
1
D
CG
LYS
55
D
CG
LYS
55
1
Y
1
D
CD
LYS
55
D
CD
LYS
55
1
Y
1
D
CE
LYS
55
D
CE
LYS
55
1
Y
1
D
NZ
LYS
55
D
NZ
LYS
55
1
Y
1
D
CG
LYS
70
D
CG
LYS
70
1
Y
1
D
CD
LYS
70
D
CD
LYS
70
1
Y
1
D
CE
LYS
70
D
CE
LYS
70
1
Y
1
D
NZ
LYS
70
D
NZ
LYS
70
1
Y
1
P
CG
GLN
9
E
CG
GLN
9
1
Y
1
P
CD
GLN
9
E
CD
GLN
9
1
Y
1
P
OE1
GLN
9
E
OE1
GLN
9
1
Y
1
P
NE2
GLN
9
E
NE2
GLN
9
1
Y
1
P
ASN
10
E
ASN
10
1
Y
1
S
GLN
9
F
GLN
9
1
Y
1
S
ASN
10
F
ASN
10
1
Y
1
A
GLU
35
-18.57
109.32
1
A
GLN
61
48.58
71.00
1
B
LYS
7
-175.36
132.59
1
B
ARG
8
-21.79
112.42
1
B
PRO
9
-69.97
71.14
1
B
LYS
45
-177.14
141.61
1
B
CYS
67
20.40
39.54
1
B
ALA
71
172.66
112.88
1
C
ARG
8
-28.55
111.46
1
C
PRO
9
-67.41
71.32
1
C
ASP
30
-109.55
-167.21
1
C
GLU
35
-18.96
106.03
1
C
TRP
42
-121.63
-167.65
1
C
CYS
67
36.20
67.23
1
D
LEU
5
-99.72
39.54
1
D
PRO
9
-64.76
67.51
1
D
GLU
34
-54.94
173.88
1
D
PRO
79
-68.87
46.54
1
P
TYR
5
-107.14
58.69
1
S
TYR
5
-108.07
47.81
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
ACE.PARAM
ACE.TOP
39.9
2.76
0.00
0.00
0.20
0.00
-2.96
0.2480000
0.008
0.1970000
0.1970000
2.90
38.88
1031
12376
12376
10.4
85.6
RANDOM
64173.54
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1F7A
ENGH & HUBER
FLAT MODEL
69.2161
0.341402
2.90
38.88
43
3170
48
0
3079
0.007
1.4
26.7
1.00
2.900
38.88
1KJ4
12376
12376
0
0
0.1070000
1
4.1
5.0
94.3
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
THE ENTIRE BIOLOGICAL DIMER ALONG WITH THE SUBSTRATE PEPTIDE BOUND IN THE ACTIVE SITE ARE PROVIDED IN THIS COORDINATE FILE
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
B
GLY
86
B
GLY
86
HELX_P
B
ILE
93
B
ILE
93
1
2
8
C
GLY
86
C
GLY
86
HELX_P
C
THR
91
C
THR
91
1
3
6
D
GLY
86
D
GLY
86
HELX_P
D
THR
91
D
THR
91
1
4
6
D
GLN
92
D
GLN
92
HELX_P
D
GLY
94
D
GLY
94
5
5
3
HYDROLASE
MARIX-CAPSID, SUBSTRATE RECOGNITION, HYDROLASE
POL_HV1A2
UNP
1
1
P03369
FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGGENNSLSEAGADRQGTVSFNFPQITLWQRPLVTIRIGGQLKEALL
DTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPI
ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT
KILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIM
LPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHEVYYDPSKDL
VAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKVSTESIVIWGKIPKFKLPIQKETWEAWWMEY
WQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLA
LQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLNGI
DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIE
AEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQV
RDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDNKDPLWKGPAKLLWKG
EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
POL_HV1JR
UNP
2
127
P20875
VSQNYPIVQN
57
155
1KJ4
1
99
P03369
A
1
1
99
57
155
1KJ4
1
99
P03369
B
1
1
99
57
155
1KJ4
1
99
P03369
C
1
1
99
57
155
1KJ4
1
99
P03369
D
1
1
99
127
136
1KJ4
1
10
P20875
P
2
1
10
127
136
1KJ4
1
10
P20875
S
2
1
10
1
GLN
engineered mutation
LYS
7
1KJ4
A
P03369
UNP
63
7
1
ASP
engineered mutation
ASN
25
1KJ4
A
P03369
UNP
81
25
2
GLN
engineered mutation
LYS
7
1KJ4
B
P03369
UNP
63
7
2
ASP
engineered mutation
ASN
25
1KJ4
B
P03369
UNP
81
25
3
GLN
engineered mutation
LYS
7
1KJ4
C
P03369
UNP
63
7
3
ASP
engineered mutation
ASN
25
1KJ4
C
P03369
UNP
81
25
4
GLN
engineered mutation
LYS
7
1KJ4
D
P03369
UNP
63
7
4
ASP
engineered mutation
ASN
25
1KJ4
D
P03369
UNP
81
25
4
3
5
3
5
4
6
5
3
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
THR
4
A
THR
4
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
THR
4
B
THR
4
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
THR
31
A
THR
31
A
LEU
33
A
LEU
33
A
LYS
70
A
LYS
70
A
VAL
77
A
VAL
77
A
PHE
53
A
PHE
53
A
GLU
65
A
GLU
65
A
LYS
43
A
LYS
43
A
GLY
48
A
GLY
48
P
SER
2
E
SER
2
P
GLN
3
E
GLN
3
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
THR
31
B
THR
31
B
GLU
34
B
GLU
34
B
HIS
69
B
HIS
69
B
GLY
78
B
GLY
78
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
P
ILE
7
E
ILE
7
P
VAL
8
E
VAL
8
C
GLN
2
C
GLN
2
C
THR
4
C
THR
4
D
THR
96
D
THR
96
D
ASN
98
D
ASN
98
C
THR
96
C
THR
96
C
ASN
98
C
ASN
98
D
GLN
2
D
GLN
2
D
THR
4
D
THR
4
C
VAL
32
C
VAL
32
C
LEU
33
C
LEU
33
C
HIS
69
C
HIS
69
C
VAL
77
C
VAL
77
C
GLY
52
C
GLY
52
C
ILE
66
C
ILE
66
C
LEU
10
C
LEU
10
C
ILE
15
C
ILE
15
C
LEU
19
C
LEU
19
C
LEU
24
C
LEU
24
C
ILE
84
C
ILE
84
C
ILE
85
C
ILE
85
C
VAL
32
C
VAL
32
C
LEU
33
C
LEU
33
C
HIS
69
C
HIS
69
C
VAL
77
C
VAL
77
C
GLY
52
C
GLY
52
C
ILE
66
C
ILE
66
C
PRO
44
C
PRO
44
C
GLY
49
C
GLY
49
S
GLN
3
F
GLN
3
S
ASN
4
F
ASN
4
D
LEU
10
D
LEU
10
D
ILE
15
D
ILE
15
D
GLN
18
D
GLN
18
D
LEU
24
D
LEU
24
D
ILE
84
D
ILE
84
D
ILE
85
D
ILE
85
D
VAL
32
D
VAL
32
D
LEU
33
D
LEU
33
D
HIS
69
D
HIS
69
D
VAL
77
D
VAL
77
D
GLY
52
D
GLY
52
D
ILE
66
D
ILE
66
D
LYS
43
D
LYS
43
D
GLY
49
D
GLY
49
BINDING SITE FOR RESIDUE ACT B 501
B
ACT
501
Software
1
BINDING SITE FOR RESIDUE ACT B 502
B
ACT
502
Software
2
BINDING SITE FOR RESIDUE ACT A 504
A
ACT
504
Software
2
BINDING SITE FOR RESIDUE ACT A 506
A
ACT
506
Software
3
BINDING SITE FOR RESIDUE ACT A 512
A
ACT
512
Software
2
BINDING SITE FOR RESIDUE ACT C 516
C
ACT
516
Software
5
BINDING SITE FOR RESIDUE ACT D 518
D
ACT
518
Software
2
BINDING SITE FOR RESIDUE ACT B 522
B
ACT
522
Software
3
BINDING SITE FOR RESIDUE ACT D 523
D
ACT
523
Software
3
BINDING SITE FOR RESIDUE ACT C 524
C
ACT
524
Software
3
B
HIS
69
B
HIS
69
1
1_555
B
TRP
6
B
TRP
6
2
1_555
B
LYS
7
B
LYS
7
2
1_555
A
LYS
7
A
LYS
7
2
1_555
A
ARG
8
A
ARG
8
2
1_555
A
GLY
73
A
GLY
73
3
1_555
A
THR
74
A
THR
74
3
1_555
A
ASN
88
A
ASN
88
3
1_555
A
ARG
14
A
ARG
14
2
1_555
D
HIS
69
D
HIS
69
2
2_665
B
GLY
17
B
GLY
17
5
3_656
C
GLY
73
C
GLY
73
5
1_555
C
THR
74
C
THR
74
5
1_555
C
ASN
88
C
ASN
88
5
1_555
C
GLN
92
C
GLN
92
5
1_555
D
ARG
14
D
ARG
14
2
1_555
D
GLY
17
D
GLY
17
2
1_555
B
ARG
8
B
ARG
8
3
1_555
D
ARG
8
D
ARG
8
3
1_555
D
LEU
10
D
LEU
10
3
1_555
C
ACT
524
O
ACT
3
1_555
D
ARG
8
D
ARG
8
3
1_555
S
VAL
1
F
VAL
1
3
1_555
C
ARG
87
C
ARG
87
3
1_555
D
TRP
6
D
TRP
6
3
1_555
D
ACT
523
R
ACT
3
1_555
23
I 2 2 2