1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wojciak, J.M.
Sarkar, D.
Landy, A.
Clubb, R.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
99
3434
3439
10.1073/pnas.052017999
11904406
Arm-site binding by lambda -integrase: solution structure and functional characterization of its amino-terminal domain.
2002
10.2210/pdb1kjk/pdb
pdb_00001kjk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
7628.709
integrase
amino-terminal domain (residues 1-64)
1
man
polymer
no
no
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPL
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lambda-like viruses
Escherichia
Escherichia coli
sample
10710
Enterobacteria phage lambda
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pIMC104
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2002-03-27
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2001-12-04
REL
structures with the lowest energy
100
25
3D_13C-separated_NOESY
3D_15N-separated_NOESY
quantitative J correlation
100mM NaCl
6.0
1
atm
290
K
distance geometry,
simulated annealing
1
lowest energy
1mM integrase U-15N,13C; 20mM PO4 (pH 6.0), 100mM NaCl, 10mM DTT, 0.01% NaN3
90% H2O/10% D2O
Delaglio
processing
NMRPipe
sgi6x
Garrett
data analysis
PIPP/CAPP/STAPP
4.1.2
Brunger
refinement
X-PLOR
3.851
500
Bruker
DRX
600
Bruker
DRX
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
ASP
11
n
11
ASP
11
A
LEU
12
n
12
LEU
12
A
PRO
13
n
13
PRO
13
A
PRO
14
n
14
PRO
14
A
ASN
15
n
15
ASN
15
A
LEU
16
n
16
LEU
16
A
TYR
17
n
17
TYR
17
A
ILE
18
n
18
ILE
18
A
ARG
19
n
19
ARG
19
A
ASN
20
n
20
ASN
20
A
ASN
21
n
21
ASN
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
TYR
24
n
24
TYR
24
A
CYS
25
n
25
CYS
25
A
TYR
26
n
26
TYR
26
A
ARG
27
n
27
ARG
27
A
ASP
28
n
28
ASP
28
A
PRO
29
n
29
PRO
29
A
ARG
30
n
30
ARG
30
A
THR
31
n
31
THR
31
A
GLY
32
n
32
GLY
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
PHE
35
n
35
PHE
35
A
GLY
36
n
36
GLY
36
A
LEU
37
n
37
LEU
37
A
GLY
38
n
38
GLY
38
A
ARG
39
n
39
ARG
39
A
ASP
40
n
40
ASP
40
A
ARG
41
n
41
ARG
41
A
ARG
42
n
42
ARG
42
A
ILE
43
n
43
ILE
43
A
ALA
44
n
44
ALA
44
A
ILE
45
n
45
ILE
45
A
THR
46
n
46
THR
46
A
GLU
47
n
47
GLU
47
A
ALA
48
n
48
ALA
48
A
ILE
49
n
49
ILE
49
A
GLN
50
n
50
GLN
50
A
ALA
51
n
51
ALA
51
A
ASN
52
n
52
ASN
52
A
ILE
53
n
53
ILE
53
A
GLU
54
n
54
GLU
54
A
LEU
55
n
55
LEU
55
A
PHE
56
n
56
PHE
56
A
SER
57
n
57
SER
57
A
GLY
58
n
58
GLY
58
A
HIS
59
n
59
HIS
59
A
n
60
60
A
n
61
61
A
n
62
62
A
n
63
63
A
n
64
64
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
17
A
N
TYR
17
A
O
CYS
25
A
O
CYS
25
A
N
TYR
24
A
N
TYR
24
A
O
GLY
38
A
O
GLY
38
1
A
MET
1
A
MET
1
1
Y
1
A
GLY
2
A
GLY
2
1
Y
1
A
ARG
3
A
ARG
3
1
Y
1
A
ARG
4
A
ARG
4
1
Y
1
A
ARG
5
A
ARG
5
1
Y
1
A
SER
6
A
SER
6
1
Y
1
A
HIS
7
A
HIS
7
1
Y
1
A
GLU
8
A
GLU
8
1
Y
1
A
ARG
9
A
ARG
9
1
Y
1
A
ARG
10
A
ARG
10
1
Y
1
A
LYS
60
A
LYS
60
1
Y
1
A
HIS
61
A
HIS
61
1
Y
1
A
LYS
62
A
LYS
62
1
Y
1
A
PRO
63
A
PRO
63
1
Y
1
A
LEU
64
A
LEU
64
1
Y
2
A
MET
1
A
MET
1
1
Y
2
A
GLY
2
A
GLY
2
1
Y
2
A
ARG
3
A
ARG
3
1
Y
2
A
ARG
4
A
ARG
4
1
Y
2
A
ARG
5
A
ARG
5
1
Y
2
A
SER
6
A
SER
6
1
Y
2
A
HIS
7
A
HIS
7
1
Y
2
A
GLU
8
A
GLU
8
1
Y
2
A
ARG
9
A
ARG
9
1
Y
2
A
ARG
10
A
ARG
10
1
Y
2
A
LYS
60
A
LYS
60
1
Y
2
A
HIS
61
A
HIS
61
1
Y
2
A
LYS
62
A
LYS
62
1
Y
2
A
PRO
63
A
PRO
63
1
Y
2
A
LEU
64
A
LEU
64
1
Y
3
A
MET
1
A
MET
1
1
Y
3
A
GLY
2
A
GLY
2
1
Y
3
A
ARG
3
A
ARG
3
1
Y
3
A
ARG
4
A
ARG
4
1
Y
3
A
ARG
5
A
ARG
5
1
Y
3
A
SER
6
A
SER
6
1
Y
3
A
HIS
7
A
HIS
7
1
Y
3
A
GLU
8
A
GLU
8
1
Y
3
A
ARG
9
A
ARG
9
1
Y
3
A
ARG
10
A
ARG
10
1
Y
3
A
LYS
60
A
LYS
60
1
Y
3
A
HIS
61
A
HIS
61
1
Y
3
A
LYS
62
A
LYS
62
1
Y
3
A
PRO
63
A
PRO
63
1
Y
3
A
LEU
64
A
LEU
64
1
Y
4
A
MET
1
A
MET
1
1
Y
4
A
GLY
2
A
GLY
2
1
Y
4
A
ARG
3
A
ARG
3
1
Y
4
A
ARG
4
A
ARG
4
1
Y
4
A
ARG
5
A
ARG
5
1
Y
4
A
SER
6
A
SER
6
1
Y
4
A
HIS
7
A
HIS
7
1
Y
4
A
GLU
8
A
GLU
8
1
Y
4
A
ARG
9
A
ARG
9
1
Y
4
A
ARG
10
A
ARG
10
1
Y
4
A
LYS
60
A
LYS
60
1
Y
4
A
HIS
61
A
HIS
61
1
Y
4
A
LYS
62
A
LYS
62
1
Y
4
A
PRO
63
A
PRO
63
1
Y
4
A
LEU
64
A
LEU
64
1
Y
5
A
MET
1
A
MET
1
1
Y
5
A
GLY
2
A
GLY
2
1
Y
5
A
ARG
3
A
ARG
3
1
Y
5
A
ARG
4
A
ARG
4
1
Y
5
A
ARG
5
A
ARG
5
1
Y
5
A
SER
6
A
SER
6
1
Y
5
A
HIS
7
A
HIS
7
1
Y
5
A
GLU
8
A
GLU
8
1
Y
5
A
ARG
9
A
ARG
9
1
Y
5
A
ARG
10
A
ARG
10
1
Y
5
A
LYS
60
A
LYS
60
1
Y
5
A
HIS
61
A
HIS
61
1
Y
5
A
LYS
62
A
LYS
62
1
Y
5
A
PRO
63
A
PRO
63
1
Y
5
A
LEU
64
A
LEU
64
1
Y
6
A
MET
1
A
MET
1
1
Y
6
A
GLY
2
A
GLY
2
1
Y
6
A
ARG
3
A
ARG
3
1
Y
6
A
ARG
4
A
ARG
4
1
Y
6
A
ARG
5
A
ARG
5
1
Y
6
A
SER
6
A
SER
6
1
Y
6
A
HIS
7
A
HIS
7
1
Y
6
A
GLU
8
A
GLU
8
1
Y
6
A
ARG
9
A
ARG
9
1
Y
6
A
ARG
10
A
ARG
10
1
Y
6
A
LYS
60
A
LYS
60
1
Y
6
A
HIS
61
A
HIS
61
1
Y
6
A
LYS
62
A
LYS
62
1
Y
6
A
PRO
63
A
PRO
63
1
Y
6
A
LEU
64
A
LEU
64
1
Y
7
A
MET
1
A
MET
1
1
Y
7
A
GLY
2
A
GLY
2
1
Y
7
A
ARG
3
A
ARG
3
1
Y
7
A
ARG
4
A
ARG
4
1
Y
7
A
ARG
5
A
ARG
5
1
Y
7
A
SER
6
A
SER
6
1
Y
7
A
HIS
7
A
HIS
7
1
Y
7
A
GLU
8
A
GLU
8
1
Y
7
A
ARG
9
A
ARG
9
1
Y
7
A
ARG
10
A
ARG
10
1
Y
7
A
LYS
60
A
LYS
60
1
Y
7
A
HIS
61
A
HIS
61
1
Y
7
A
LYS
62
A
LYS
62
1
Y
7
A
PRO
63
A
PRO
63
1
Y
7
A
LEU
64
A
LEU
64
1
Y
8
A
MET
1
A
MET
1
1
Y
8
A
GLY
2
A
GLY
2
1
Y
8
A
ARG
3
A
ARG
3
1
Y
8
A
ARG
4
A
ARG
4
1
Y
8
A
ARG
5
A
ARG
5
1
Y
8
A
SER
6
A
SER
6
1
Y
8
A
HIS
7
A
HIS
7
1
Y
8
A
GLU
8
A
GLU
8
1
Y
8
A
ARG
9
A
ARG
9
1
Y
8
A
ARG
10
A
ARG
10
1
Y
8
A
LYS
60
A
LYS
60
1
Y
8
A
HIS
61
A
HIS
61
1
Y
8
A
LYS
62
A
LYS
62
1
Y
8
A
PRO
63
A
PRO
63
1
Y
8
A
LEU
64
A
LEU
64
1
Y
9
A
MET
1
A
MET
1
1
Y
9
A
GLY
2
A
GLY
2
1
Y
9
A
ARG
3
A
ARG
3
1
Y
9
A
ARG
4
A
ARG
4
1
Y
9
A
ARG
5
A
ARG
5
1
Y
9
A
SER
6
A
SER
6
1
Y
9
A
HIS
7
A
HIS
7
1
Y
9
A
GLU
8
A
GLU
8
1
Y
9
A
ARG
9
A
ARG
9
1
Y
9
A
ARG
10
A
ARG
10
1
Y
9
A
LYS
60
A
LYS
60
1
Y
9
A
HIS
61
A
HIS
61
1
Y
9
A
LYS
62
A
LYS
62
1
Y
9
A
PRO
63
A
PRO
63
1
Y
9
A
LEU
64
A
LEU
64
1
Y
10
A
MET
1
A
MET
1
1
Y
10
A
GLY
2
A
GLY
2
1
Y
10
A
ARG
3
A
ARG
3
1
Y
10
A
ARG
4
A
ARG
4
1
Y
10
A
ARG
5
A
ARG
5
1
Y
10
A
SER
6
A
SER
6
1
Y
10
A
HIS
7
A
HIS
7
1
Y
10
A
GLU
8
A
GLU
8
1
Y
10
A
ARG
9
A
ARG
9
1
Y
10
A
ARG
10
A
ARG
10
1
Y
10
A
LYS
60
A
LYS
60
1
Y
10
A
HIS
61
A
HIS
61
1
Y
10
A
LYS
62
A
LYS
62
1
Y
10
A
PRO
63
A
PRO
63
1
Y
10
A
LEU
64
A
LEU
64
1
Y
11
A
MET
1
A
MET
1
1
Y
11
A
GLY
2
A
GLY
2
1
Y
11
A
ARG
3
A
ARG
3
1
Y
11
A
ARG
4
A
ARG
4
1
Y
11
A
ARG
5
A
ARG
5
1
Y
11
A
SER
6
A
SER
6
1
Y
11
A
HIS
7
A
HIS
7
1
Y
11
A
GLU
8
A
GLU
8
1
Y
11
A
ARG
9
A
ARG
9
1
Y
11
A
ARG
10
A
ARG
10
1
Y
11
A
LYS
60
A
LYS
60
1
Y
11
A
HIS
61
A
HIS
61
1
Y
11
A
LYS
62
A
LYS
62
1
Y
11
A
PRO
63
A
PRO
63
1
Y
11
A
LEU
64
A
LEU
64
1
Y
12
A
MET
1
A
MET
1
1
Y
12
A
GLY
2
A
GLY
2
1
Y
12
A
ARG
3
A
ARG
3
1
Y
12
A
ARG
4
A
ARG
4
1
Y
12
A
ARG
5
A
ARG
5
1
Y
12
A
SER
6
A
SER
6
1
Y
12
A
HIS
7
A
HIS
7
1
Y
12
A
GLU
8
A
GLU
8
1
Y
12
A
ARG
9
A
ARG
9
1
Y
12
A
ARG
10
A
ARG
10
1
Y
12
A
LYS
60
A
LYS
60
1
Y
12
A
HIS
61
A
HIS
61
1
Y
12
A
LYS
62
A
LYS
62
1
Y
12
A
PRO
63
A
PRO
63
1
Y
12
A
LEU
64
A
LEU
64
1
Y
13
A
MET
1
A
MET
1
1
Y
13
A
GLY
2
A
GLY
2
1
Y
13
A
ARG
3
A
ARG
3
1
Y
13
A
ARG
4
A
ARG
4
1
Y
13
A
ARG
5
A
ARG
5
1
Y
13
A
SER
6
A
SER
6
1
Y
13
A
HIS
7
A
HIS
7
1
Y
13
A
GLU
8
A
GLU
8
1
Y
13
A
ARG
9
A
ARG
9
1
Y
13
A
ARG
10
A
ARG
10
1
Y
13
A
LYS
60
A
LYS
60
1
Y
13
A
HIS
61
A
HIS
61
1
Y
13
A
LYS
62
A
LYS
62
1
Y
13
A
PRO
63
A
PRO
63
1
Y
13
A
LEU
64
A
LEU
64
1
Y
14
A
MET
1
A
MET
1
1
Y
14
A
GLY
2
A
GLY
2
1
Y
14
A
ARG
3
A
ARG
3
1
Y
14
A
ARG
4
A
ARG
4
1
Y
14
A
ARG
5
A
ARG
5
1
Y
14
A
SER
6
A
SER
6
1
Y
14
A
HIS
7
A
HIS
7
1
Y
14
A
GLU
8
A
GLU
8
1
Y
14
A
ARG
9
A
ARG
9
1
Y
14
A
ARG
10
A
ARG
10
1
Y
14
A
LYS
60
A
LYS
60
1
Y
14
A
HIS
61
A
HIS
61
1
Y
14
A
LYS
62
A
LYS
62
1
Y
14
A
PRO
63
A
PRO
63
1
Y
14
A
LEU
64
A
LEU
64
1
Y
15
A
MET
1
A
MET
1
1
Y
15
A
GLY
2
A
GLY
2
1
Y
15
A
ARG
3
A
ARG
3
1
Y
15
A
ARG
4
A
ARG
4
1
Y
15
A
ARG
5
A
ARG
5
1
Y
15
A
SER
6
A
SER
6
1
Y
15
A
HIS
7
A
HIS
7
1
Y
15
A
GLU
8
A
GLU
8
1
Y
15
A
ARG
9
A
ARG
9
1
Y
15
A
ARG
10
A
ARG
10
1
Y
15
A
LYS
60
A
LYS
60
1
Y
15
A
HIS
61
A
HIS
61
1
Y
15
A
LYS
62
A
LYS
62
1
Y
15
A
PRO
63
A
PRO
63
1
Y
15
A
LEU
64
A
LEU
64
1
Y
16
A
MET
1
A
MET
1
1
Y
16
A
GLY
2
A
GLY
2
1
Y
16
A
ARG
3
A
ARG
3
1
Y
16
A
ARG
4
A
ARG
4
1
Y
16
A
ARG
5
A
ARG
5
1
Y
16
A
SER
6
A
SER
6
1
Y
16
A
HIS
7
A
HIS
7
1
Y
16
A
GLU
8
A
GLU
8
1
Y
16
A
ARG
9
A
ARG
9
1
Y
16
A
ARG
10
A
ARG
10
1
Y
16
A
LYS
60
A
LYS
60
1
Y
16
A
HIS
61
A
HIS
61
1
Y
16
A
LYS
62
A
LYS
62
1
Y
16
A
PRO
63
A
PRO
63
1
Y
16
A
LEU
64
A
LEU
64
1
Y
17
A
MET
1
A
MET
1
1
Y
17
A
GLY
2
A
GLY
2
1
Y
17
A
ARG
3
A
ARG
3
1
Y
17
A
ARG
4
A
ARG
4
1
Y
17
A
ARG
5
A
ARG
5
1
Y
17
A
SER
6
A
SER
6
1
Y
17
A
HIS
7
A
HIS
7
1
Y
17
A
GLU
8
A
GLU
8
1
Y
17
A
ARG
9
A
ARG
9
1
Y
17
A
ARG
10
A
ARG
10
1
Y
17
A
LYS
60
A
LYS
60
1
Y
17
A
HIS
61
A
HIS
61
1
Y
17
A
LYS
62
A
LYS
62
1
Y
17
A
PRO
63
A
PRO
63
1
Y
17
A
LEU
64
A
LEU
64
1
Y
18
A
MET
1
A
MET
1
1
Y
18
A
GLY
2
A
GLY
2
1
Y
18
A
ARG
3
A
ARG
3
1
Y
18
A
ARG
4
A
ARG
4
1
Y
18
A
ARG
5
A
ARG
5
1
Y
18
A
SER
6
A
SER
6
1
Y
18
A
HIS
7
A
HIS
7
1
Y
18
A
GLU
8
A
GLU
8
1
Y
18
A
ARG
9
A
ARG
9
1
Y
18
A
ARG
10
A
ARG
10
1
Y
18
A
LYS
60
A
LYS
60
1
Y
18
A
HIS
61
A
HIS
61
1
Y
18
A
LYS
62
A
LYS
62
1
Y
18
A
PRO
63
A
PRO
63
1
Y
18
A
LEU
64
A
LEU
64
1
Y
19
A
MET
1
A
MET
1
1
Y
19
A
GLY
2
A
GLY
2
1
Y
19
A
ARG
3
A
ARG
3
1
Y
19
A
ARG
4
A
ARG
4
1
Y
19
A
ARG
5
A
ARG
5
1
Y
19
A
SER
6
A
SER
6
1
Y
19
A
HIS
7
A
HIS
7
1
Y
19
A
GLU
8
A
GLU
8
1
Y
19
A
ARG
9
A
ARG
9
1
Y
19
A
ARG
10
A
ARG
10
1
Y
19
A
LYS
60
A
LYS
60
1
Y
19
A
HIS
61
A
HIS
61
1
Y
19
A
LYS
62
A
LYS
62
1
Y
19
A
PRO
63
A
PRO
63
1
Y
19
A
LEU
64
A
LEU
64
1
Y
20
A
MET
1
A
MET
1
1
Y
20
A
GLY
2
A
GLY
2
1
Y
20
A
ARG
3
A
ARG
3
1
Y
20
A
ARG
4
A
ARG
4
1
Y
20
A
ARG
5
A
ARG
5
1
Y
20
A
SER
6
A
SER
6
1
Y
20
A
HIS
7
A
HIS
7
1
Y
20
A
GLU
8
A
GLU
8
1
Y
20
A
ARG
9
A
ARG
9
1
Y
20
A
ARG
10
A
ARG
10
1
Y
20
A
LYS
60
A
LYS
60
1
Y
20
A
HIS
61
A
HIS
61
1
Y
20
A
LYS
62
A
LYS
62
1
Y
20
A
PRO
63
A
PRO
63
1
Y
20
A
LEU
64
A
LEU
64
1
Y
21
A
MET
1
A
MET
1
1
Y
21
A
GLY
2
A
GLY
2
1
Y
21
A
ARG
3
A
ARG
3
1
Y
21
A
ARG
4
A
ARG
4
1
Y
21
A
ARG
5
A
ARG
5
1
Y
21
A
SER
6
A
SER
6
1
Y
21
A
HIS
7
A
HIS
7
1
Y
21
A
GLU
8
A
GLU
8
1
Y
21
A
ARG
9
A
ARG
9
1
Y
21
A
ARG
10
A
ARG
10
1
Y
21
A
LYS
60
A
LYS
60
1
Y
21
A
HIS
61
A
HIS
61
1
Y
21
A
LYS
62
A
LYS
62
1
Y
21
A
PRO
63
A
PRO
63
1
Y
21
A
LEU
64
A
LEU
64
1
Y
22
A
MET
1
A
MET
1
1
Y
22
A
GLY
2
A
GLY
2
1
Y
22
A
ARG
3
A
ARG
3
1
Y
22
A
ARG
4
A
ARG
4
1
Y
22
A
ARG
5
A
ARG
5
1
Y
22
A
SER
6
A
SER
6
1
Y
22
A
HIS
7
A
HIS
7
1
Y
22
A
GLU
8
A
GLU
8
1
Y
22
A
ARG
9
A
ARG
9
1
Y
22
A
ARG
10
A
ARG
10
1
Y
22
A
LYS
60
A
LYS
60
1
Y
22
A
HIS
61
A
HIS
61
1
Y
22
A
LYS
62
A
LYS
62
1
Y
22
A
PRO
63
A
PRO
63
1
Y
22
A
LEU
64
A
LEU
64
1
Y
23
A
MET
1
A
MET
1
1
Y
23
A
GLY
2
A
GLY
2
1
Y
23
A
ARG
3
A
ARG
3
1
Y
23
A
ARG
4
A
ARG
4
1
Y
23
A
ARG
5
A
ARG
5
1
Y
23
A
SER
6
A
SER
6
1
Y
23
A
HIS
7
A
HIS
7
1
Y
23
A
GLU
8
A
GLU
8
1
Y
23
A
ARG
9
A
ARG
9
1
Y
23
A
ARG
10
A
ARG
10
1
Y
23
A
LYS
60
A
LYS
60
1
Y
23
A
HIS
61
A
HIS
61
1
Y
23
A
LYS
62
A
LYS
62
1
Y
23
A
PRO
63
A
PRO
63
1
Y
23
A
LEU
64
A
LEU
64
1
Y
24
A
MET
1
A
MET
1
1
Y
24
A
GLY
2
A
GLY
2
1
Y
24
A
ARG
3
A
ARG
3
1
Y
24
A
ARG
4
A
ARG
4
1
Y
24
A
ARG
5
A
ARG
5
1
Y
24
A
SER
6
A
SER
6
1
Y
24
A
HIS
7
A
HIS
7
1
Y
24
A
GLU
8
A
GLU
8
1
Y
24
A
ARG
9
A
ARG
9
1
Y
24
A
ARG
10
A
ARG
10
1
Y
24
A
LYS
60
A
LYS
60
1
Y
24
A
HIS
61
A
HIS
61
1
Y
24
A
LYS
62
A
LYS
62
1
Y
24
A
PRO
63
A
PRO
63
1
Y
24
A
LEU
64
A
LEU
64
1
Y
25
A
MET
1
A
MET
1
1
Y
25
A
GLY
2
A
GLY
2
1
Y
25
A
ARG
3
A
ARG
3
1
Y
25
A
ARG
4
A
ARG
4
1
Y
25
A
ARG
5
A
ARG
5
1
Y
25
A
SER
6
A
SER
6
1
Y
25
A
HIS
7
A
HIS
7
1
Y
25
A
GLU
8
A
GLU
8
1
Y
25
A
ARG
9
A
ARG
9
1
Y
25
A
ARG
10
A
ARG
10
1
Y
25
A
LYS
60
A
LYS
60
1
Y
25
A
HIS
61
A
HIS
61
1
Y
25
A
LYS
62
A
LYS
62
1
Y
25
A
PRO
63
A
PRO
63
1
Y
25
A
LEU
64
A
LEU
64
1
Y
7
A
A
O
H
ARG
GLY
19
22
1.53
10
A
A
O
H
ARG
GLY
19
22
1.54
11
A
A
OH
HE
TYR
ARG
24
41
1.56
14
A
A
HH
HE
TYR
ARG
24
41
1.30
14
A
A
OH
HE
TYR
ARG
24
41
1.49
18
A
A
OG1
HZ2
THR
LYS
31
33
1.40
19
A
A
O
H
ARG
GLY
19
22
1.50
20
A
A
O
H
ARG
GLY
19
22
1.58
25
A
A
O
H
ARG
GLY
19
22
1.53
1
A
ASN
15
70.84
-17.35
2
A
PRO
13
-35.59
145.43
2
A
LEU
37
-104.79
-69.56
2
A
SER
57
-165.28
53.63
3
A
ASN
15
61.70
-9.35
3
A
LEU
37
-102.53
-61.27
3
A
SER
57
-154.44
80.39
4
A
PRO
13
-35.41
158.84
4
A
LYS
33
-75.99
-161.97
4
A
SER
57
-95.04
47.75
5
A
ASN
15
57.05
4.21
5
A
SER
57
-99.85
59.58
6
A
PRO
13
-40.21
157.27
6
A
ASN
15
69.00
-11.27
6
A
SER
57
49.78
18.07
7
A
PRO
13
-37.87
154.94
7
A
ASN
15
54.71
6.50
8
A
PRO
13
-40.60
156.89
8
A
LYS
33
-74.76
-164.97
9
A
PRO
13
-37.59
158.78
9
A
ASN
15
49.48
20.94
9
A
ASN
20
-54.05
-8.85
9
A
SER
57
53.93
19.17
10
A
PRO
13
-40.78
157.24
10
A
LEU
37
-105.09
-73.87
10
A
SER
57
74.12
-43.29
11
A
PRO
13
-35.29
154.85
11
A
ASN
15
62.73
-4.39
11
A
LEU
37
-102.77
-71.48
11
A
SER
57
-163.68
69.61
12
A
PRO
13
-36.14
158.62
12
A
ASN
15
52.27
10.43
12
A
SER
57
-167.97
61.61
13
A
ASN
15
55.64
8.69
13
A
TYR
17
-127.38
-166.59
13
A
LEU
37
-99.15
-68.87
13
A
SER
57
52.15
17.31
14
A
PRO
13
-34.94
157.50
14
A
SER
57
-151.89
75.01
15
A
PRO
13
-35.92
158.74
15
A
ASN
15
59.71
1.25
15
A
LYS
33
-75.25
-166.09
15
A
SER
57
-153.61
70.36
16
A
ASN
15
73.34
-15.83
16
A
PRO
29
-58.41
0.82
16
A
SER
57
-164.54
39.13
17
A
ASN
15
59.96
19.61
17
A
LEU
37
-99.08
-63.80
17
A
SER
57
-170.50
-32.45
18
A
ASN
15
74.19
-10.49
18
A
SER
57
-152.47
71.74
19
A
ASN
15
62.58
-10.78
19
A
LEU
37
-103.74
-62.87
20
A
PRO
13
-34.31
158.31
20
A
ASN
15
53.55
19.95
20
A
SER
57
-144.01
46.08
21
A
ASN
15
52.75
9.12
21
A
TYR
17
-138.20
-157.07
21
A
ASN
20
-56.23
-8.44
21
A
SER
57
52.94
14.22
22
A
ASN
15
48.19
22.50
22
A
LEU
37
-106.59
-70.09
22
A
SER
57
-173.68
52.90
23
A
PRO
13
-38.31
156.42
23
A
ASN
15
65.59
-1.83
23
A
LEU
37
-100.56
-63.04
23
A
SER
57
-163.01
35.84
24
A
ASN
15
67.07
-8.02
24
A
LYS
33
-74.10
-169.35
24
A
SER
57
-157.74
66.91
25
A
ASN
15
51.01
15.65
25
A
SER
57
75.16
30.59
Solution structure of the lambda integrase amino-terminal domain
1
N
N
A
ASP
40
A
ASP
40
HELX_P
A
GLY
58
A
GLY
58
1
1
19
VIRAL PROTEIN
DNA recombination, integrase, three-stranded beta-sheet, DNA-binding domain, Viral protein
VINT_LAMBD
UNP
1
1
P03700
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPL
1
64
1KJK
1
64
P03700
A
1
1
64
3
anti-parallel
anti-parallel
A
LEU
16
A
LEU
16
A
ILE
18
A
ILE
18
A
TYR
24
A
TYR
24
A
ARG
27
A
ARG
27
A
GLU
34
A
GLU
34
A
GLY
38
A
GLY
38