0.02660
0.00000
0.00000
0.00000
0.01712
0.00000
0.00000
0.00000
0.01562
0.00000
0.00000
0.00000
Sorme, P.
Arnoux, P.
Kahl-Knutsson, B.
Leffler, H.
Rini, J.M.
Nilsson, U.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
37.600
58.400
64.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Br -1
79.904
BROMIDE ION
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
BR
N
75
N
CL
N
76
N
N
N
77
R
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
S
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
R
C
N
91
R
C
N
92
S
C
N
93
R
C
N
94
R
C
N
95
N
C
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
Y
168
N
C
Y
169
N
N
Y
170
N
C
Y
171
N
C
Y
172
N
N
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
S
C
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
S
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
R
C
N
277
R
C
N
278
R
C
N
279
S
C
N
280
R
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
N
N
285
N
O
N
286
N
O
N
287
N
O
N
288
N
O
N
289
N
O
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
O
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
R
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
N
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
N
433
N
C
N
434
N
C
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
doub
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
127
1737
1743
10.1021/ja043475p
15701008
Structural and thermodynamic studies on cation-Pi interactions in lectin-ligand complexes: high-affinity galectin-3 inhibitors through fine-tuning of an arginine-arene interaction.
2005
10.2210/pdb1kjl/pdb
pdb_00001kjl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-06-28
ADSC QUANTUM 4
Si 111
MAD
M
x-ray
1
0.96
1.0
F2
CHESS
0.96
SYNCHROTRON
CHESS BEAMLINE F2
16371.765
Galectin-3
C-Terminal Domain, CARBOHYDRATE RECOGNITION DOMAIN (CRD)
1
man
polymer
383.349
beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
35.453
CHLORIDE ION
1
syn
non-polymer
79.904
BROMIDE ION
2
syn
non-polymer
18.015
water
160
nat
water
Galactose-specific lectin 3,
MAC-2 antigen,
IgE-binding protein,
35 kDa lectin,
Carbohydrate binding protein 35,
CBP 35,
Laminin-binding protein,
Lectin L-29,
L-31,
Galactoside-binding protein,
GALBP
no
no
GPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGRE
ERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
GPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGRE
ERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
2.15
42.68
VAPOR DIFFUSION, HANGING DROP
7.5
PEG 4000, Tris, magnesium chloride, 2-mercaptoethanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_close_contact
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2005-04-12
1
1
2008-04-27
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-08-16
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
NAG
502
n
B
NAG
1
GAL
501
n
B
GAL
2
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
2.1 A resolution
GALECTIN-3 CRD IN COMPLEX WITH 2,3,5,6-TETRAFLUORO-4-METHOXY-BENZAMIDE
HETEROGEN
LACNAC IS D-GALACTOSE COVALENTLY BOUND TO
N-ACETYL-D-GLUCOSAMINE.
RCSB
Y
RCSB
2001-12-04
REL
REL
oligosaccharide
DGalpb1-4DGlcpNAcb1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}
2
PDB-CARE
LINUCS
C1
O4
GAL
NAG
2
1
2
O1
HO4
sing
n
n
CL
CHLORIDE ION
BR
BROMIDE ION
HOH
water
1A3K
PDB ENTRY 1A3K
PDB
experimental model
CL
300
3
CL
CL
300
A
BR
301
4
BR
BR
301
A
BR
302
4
BR
BR
302
A
WAT
600
5
HOH
HOH
600
A
WAT
601
5
HOH
HOH
601
A
WAT
602
5
HOH
HOH
602
A
WAT
603
5
HOH
HOH
603
A
WAT
604
5
HOH
HOH
604
A
WAT
605
5
HOH
HOH
605
A
WAT
606
5
HOH
HOH
606
A
WAT
607
5
HOH
HOH
607
A
WAT
608
5
HOH
HOH
608
A
WAT
609
5
HOH
HOH
609
A
WAT
610
5
HOH
HOH
610
A
WAT
611
5
HOH
HOH
611
A
WAT
612
5
HOH
HOH
612
A
WAT
613
5
HOH
HOH
613
A
WAT
614
5
HOH
HOH
614
A
WAT
615
5
HOH
HOH
615
A
WAT
616
5
HOH
HOH
616
A
WAT
617
5
HOH
HOH
617
A
WAT
618
5
HOH
HOH
618
A
WAT
619
5
HOH
HOH
619
A
WAT
620
5
HOH
HOH
620
A
WAT
621
5
HOH
HOH
621
A
WAT
622
5
HOH
HOH
622
A
WAT
623
5
HOH
HOH
623
A
WAT
624
5
HOH
HOH
624
A
WAT
625
5
HOH
HOH
625
A
WAT
626
5
HOH
HOH
626
A
WAT
627
5
HOH
HOH
627
A
WAT
628
5
HOH
HOH
628
A
WAT
629
5
HOH
HOH
629
A
WAT
630
5
HOH
HOH
630
A
WAT
631
5
HOH
HOH
631
A
WAT
632
5
HOH
HOH
632
A
WAT
633
5
HOH
HOH
633
A
WAT
634
5
HOH
HOH
634
A
WAT
635
5
HOH
HOH
635
A
WAT
636
5
HOH
HOH
636
A
WAT
637
5
HOH
HOH
637
A
WAT
638
5
HOH
HOH
638
A
WAT
639
5
HOH
HOH
639
A
WAT
640
5
HOH
HOH
640
A
WAT
641
5
HOH
HOH
641
A
WAT
642
5
HOH
HOH
642
A
WAT
643
5
HOH
HOH
643
A
WAT
644
5
HOH
HOH
644
A
WAT
645
5
HOH
HOH
645
A
WAT
646
5
HOH
HOH
646
A
WAT
647
5
HOH
HOH
647
A
WAT
648
5
HOH
HOH
648
A
WAT
649
5
HOH
HOH
649
A
WAT
650
5
HOH
HOH
650
A
WAT
651
5
HOH
HOH
651
A
WAT
652
5
HOH
HOH
652
A
WAT
653
5
HOH
HOH
653
A
WAT
654
5
HOH
HOH
654
A
WAT
655
5
HOH
HOH
655
A
WAT
656
5
HOH
HOH
656
A
WAT
657
5
HOH
HOH
657
A
WAT
658
5
HOH
HOH
658
A
WAT
659
5
HOH
HOH
659
A
WAT
660
5
HOH
HOH
660
A
WAT
661
5
HOH
HOH
661
A
WAT
662
5
HOH
HOH
662
A
WAT
663
5
HOH
HOH
663
A
WAT
664
5
HOH
HOH
664
A
WAT
665
5
HOH
HOH
665
A
WAT
666
5
HOH
HOH
666
A
WAT
667
5
HOH
HOH
667
A
WAT
668
5
HOH
HOH
668
A
WAT
669
5
HOH
HOH
669
A
WAT
670
5
HOH
HOH
670
A
WAT
671
5
HOH
HOH
671
A
WAT
672
5
HOH
HOH
672
A
WAT
673
5
HOH
HOH
673
A
WAT
674
5
HOH
HOH
674
A
WAT
675
5
HOH
HOH
675
A
WAT
676
5
HOH
HOH
676
A
WAT
677
5
HOH
HOH
677
A
WAT
678
5
HOH
HOH
678
A
WAT
679
5
HOH
HOH
679
A
WAT
680
5
HOH
HOH
680
A
WAT
681
5
HOH
HOH
681
A
WAT
682
5
HOH
HOH
682
A
WAT
683
5
HOH
HOH
683
A
WAT
684
5
HOH
HOH
684
A
WAT
685
5
HOH
HOH
685
A
WAT
686
5
HOH
HOH
686
A
WAT
687
5
HOH
HOH
687
A
WAT
688
5
HOH
HOH
688
A
WAT
689
5
HOH
HOH
689
A
WAT
690
5
HOH
HOH
690
A
WAT
691
5
HOH
HOH
691
A
WAT
692
5
HOH
HOH
692
A
WAT
693
5
HOH
HOH
693
A
WAT
694
5
HOH
HOH
694
A
WAT
695
5
HOH
HOH
695
A
WAT
696
5
HOH
HOH
696
A
WAT
697
5
HOH
HOH
697
A
WAT
698
5
HOH
HOH
698
A
WAT
699
5
HOH
HOH
699
A
WAT
700
5
HOH
HOH
700
A
WAT
701
5
HOH
HOH
701
A
WAT
702
5
HOH
HOH
702
A
WAT
703
5
HOH
HOH
703
A
WAT
704
5
HOH
HOH
704
A
WAT
705
5
HOH
HOH
705
A
WAT
706
5
HOH
HOH
706
A
WAT
707
5
HOH
HOH
707
A
WAT
708
5
HOH
HOH
708
A
WAT
709
5
HOH
HOH
709
A
WAT
710
5
HOH
HOH
710
A
WAT
711
5
HOH
HOH
711
A
WAT
712
5
HOH
HOH
712
A
WAT
713
5
HOH
HOH
713
A
WAT
714
5
HOH
HOH
714
A
WAT
715
5
HOH
HOH
715
A
WAT
716
5
HOH
HOH
716
A
WAT
717
5
HOH
HOH
717
A
WAT
718
5
HOH
HOH
718
A
WAT
719
5
HOH
HOH
719
A
WAT
720
5
HOH
HOH
720
A
WAT
721
5
HOH
HOH
721
A
WAT
722
5
HOH
HOH
722
A
WAT
723
5
HOH
HOH
723
A
WAT
724
5
HOH
HOH
724
A
WAT
725
5
HOH
HOH
725
A
WAT
726
5
HOH
HOH
726
A
WAT
727
5
HOH
HOH
727
A
WAT
728
5
HOH
HOH
728
A
WAT
729
5
HOH
HOH
729
A
WAT
730
5
HOH
HOH
730
A
WAT
731
5
HOH
HOH
731
A
WAT
732
5
HOH
HOH
732
A
WAT
733
5
HOH
HOH
733
A
WAT
734
5
HOH
HOH
734
A
WAT
735
5
HOH
HOH
735
A
WAT
736
5
HOH
HOH
736
A
WAT
737
5
HOH
HOH
737
A
WAT
738
5
HOH
HOH
738
A
WAT
739
5
HOH
HOH
739
A
WAT
740
5
HOH
HOH
740
A
WAT
741
5
HOH
HOH
741
A
WAT
742
5
HOH
HOH
742
A
WAT
743
5
HOH
HOH
743
A
WAT
744
5
HOH
HOH
744
A
WAT
745
5
HOH
HOH
745
A
WAT
746
5
HOH
HOH
746
A
WAT
747
5
HOH
HOH
747
A
WAT
748
5
HOH
HOH
748
A
WAT
749
5
HOH
HOH
749
A
WAT
750
5
HOH
HOH
750
A
WAT
751
5
HOH
HOH
751
A
WAT
752
5
HOH
HOH
752
A
WAT
753
5
HOH
HOH
753
A
WAT
754
5
HOH
HOH
754
A
WAT
755
5
HOH
HOH
755
A
WAT
756
5
HOH
HOH
756
A
WAT
757
5
HOH
HOH
757
A
WAT
758
5
HOH
HOH
758
A
WAT
759
5
HOH
HOH
759
A
n
1
105
A
n
2
106
A
n
3
107
A
n
4
108
A
n
5
109
A
n
6
110
A
n
7
111
A
n
8
112
A
PRO
113
n
9
PRO
113
A
LEU
114
n
10
LEU
114
A
ILE
115
n
11
ILE
115
A
VAL
116
n
12
VAL
116
A
PRO
117
n
13
PRO
117
A
TYR
118
n
14
TYR
118
A
ASN
119
n
15
ASN
119
A
LEU
120
n
16
LEU
120
A
PRO
121
n
17
PRO
121
A
LEU
122
n
18
LEU
122
A
PRO
123
n
19
PRO
123
A
GLY
124
n
20
GLY
124
A
GLY
125
n
21
GLY
125
A
VAL
126
n
22
VAL
126
A
VAL
127
n
23
VAL
127
A
PRO
128
n
24
PRO
128
A
ARG
129
n
25
ARG
129
A
MET
130
n
26
MET
130
A
LEU
131
n
27
LEU
131
A
ILE
132
n
28
ILE
132
A
THR
133
n
29
THR
133
A
ILE
134
n
30
ILE
134
A
LEU
135
n
31
LEU
135
A
GLY
136
n
32
GLY
136
A
THR
137
n
33
THR
137
A
VAL
138
n
34
VAL
138
A
LYS
139
n
35
LYS
139
A
PRO
140
n
36
PRO
140
A
ASN
141
n
37
ASN
141
A
ALA
142
n
38
ALA
142
A
ASN
143
n
39
ASN
143
A
ARG
144
n
40
ARG
144
A
ILE
145
n
41
ILE
145
A
ALA
146
n
42
ALA
146
A
LEU
147
n
43
LEU
147
A
ASP
148
n
44
ASP
148
A
PHE
149
n
45
PHE
149
A
GLN
150
n
46
GLN
150
A
ARG
151
n
47
ARG
151
A
GLY
152
n
48
GLY
152
A
ASN
153
n
49
ASN
153
A
ASP
154
n
50
ASP
154
A
VAL
155
n
51
VAL
155
A
ALA
156
n
52
ALA
156
A
PHE
157
n
53
PHE
157
A
HIS
158
n
54
HIS
158
A
PHE
159
n
55
PHE
159
A
ASN
160
n
56
ASN
160
A
PRO
161
n
57
PRO
161
A
ARG
162
n
58
ARG
162
A
PHE
163
n
59
PHE
163
A
ASN
164
n
60
ASN
164
A
GLU
165
n
61
GLU
165
A
ASN
166
n
62
ASN
166
A
ASN
167
n
63
ASN
167
A
ARG
168
n
64
ARG
168
A
ARG
169
n
65
ARG
169
A
VAL
170
n
66
VAL
170
A
ILE
171
n
67
ILE
171
A
VAL
172
n
68
VAL
172
A
CYS
173
n
69
CYS
173
A
ASN
174
n
70
ASN
174
A
THR
175
n
71
THR
175
A
LYS
176
n
72
LYS
176
A
LEU
177
n
73
LEU
177
A
ASP
178
n
74
ASP
178
A
ASN
179
n
75
ASN
179
A
ASN
180
n
76
ASN
180
A
TRP
181
n
77
TRP
181
A
GLY
182
n
78
GLY
182
A
ARG
183
n
79
ARG
183
A
GLU
184
n
80
GLU
184
A
GLU
185
n
81
GLU
185
A
ARG
186
n
82
ARG
186
A
GLN
187
n
83
GLN
187
A
SER
188
n
84
SER
188
A
VAL
189
n
85
VAL
189
A
PHE
190
n
86
PHE
190
A
PRO
191
n
87
PRO
191
A
PHE
192
n
88
PHE
192
A
GLU
193
n
89
GLU
193
A
SER
194
n
90
SER
194
A
GLY
195
n
91
GLY
195
A
LYS
196
n
92
LYS
196
A
PRO
197
n
93
PRO
197
A
PHE
198
n
94
PHE
198
A
LYS
199
n
95
LYS
199
A
ILE
200
n
96
ILE
200
A
GLN
201
n
97
GLN
201
A
VAL
202
n
98
VAL
202
A
LEU
203
n
99
LEU
203
A
VAL
204
n
100
VAL
204
A
GLU
205
n
101
GLU
205
A
PRO
206
n
102
PRO
206
A
ASP
207
n
103
ASP
207
A
HIS
208
n
104
HIS
208
A
PHE
209
n
105
PHE
209
A
LYS
210
n
106
LYS
210
A
VAL
211
n
107
VAL
211
A
ALA
212
n
108
ALA
212
A
VAL
213
n
109
VAL
213
A
ASN
214
n
110
ASN
214
A
ASP
215
n
111
ASP
215
A
ALA
216
n
112
ALA
216
A
HIS
217
n
113
HIS
217
A
LEU
218
n
114
LEU
218
A
LEU
219
n
115
LEU
219
A
GLN
220
n
116
GLN
220
A
TYR
221
n
117
TYR
221
A
ASN
222
n
118
ASN
222
A
HIS
223
n
119
HIS
223
A
ARG
224
n
120
ARG
224
A
VAL
225
n
121
VAL
225
A
LYS
226
n
122
LYS
226
A
LYS
227
n
123
LYS
227
A
LEU
228
n
124
LEU
228
A
ASN
229
n
125
ASN
229
A
GLU
230
n
126
GLU
230
A
ILE
231
n
127
ILE
231
A
SER
232
n
128
SER
232
A
LYS
233
n
129
LYS
233
A
LEU
234
n
130
LEU
234
A
GLY
235
n
131
GLY
235
A
ILE
236
n
132
ILE
236
A
SER
237
n
133
SER
237
A
GLY
238
n
134
GLY
238
A
ASP
239
n
135
ASP
239
A
ILE
240
n
136
ILE
240
A
ASP
241
n
137
ASP
241
A
LEU
242
n
138
LEU
242
A
THR
243
n
139
THR
243
A
SER
244
n
140
SER
244
A
ALA
245
n
141
ALA
245
A
SER
246
n
142
SER
246
A
TYR
247
n
143
TYR
247
A
THR
248
n
144
THR
248
A
MET
249
n
145
MET
249
A
ILE
250
n
146
ILE
250
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
118
A
N
TYR
14
A
O
ILE
236
A
O
ILE
132
A
O
SER
237
A
O
SER
133
A
N
ALA
146
A
N
ALA
42
A
N
PHE
149
A
N
PHE
45
A
O
PHE
157
A
O
PHE
53
A
N
ARG
162
A
N
ARG
58
A
O
VAL
170
A
O
VAL
66
A
N
LEU
177
A
N
LEU
73
A
O
ASN
180
A
O
ASN
76
A
N
TYR
118
A
N
TYR
14
A
O
ILE
236
A
O
ILE
132
A
O
SER
237
A
O
SER
133
A
N
ALA
146
A
N
ALA
42
A
N
PHE
149
A
N
PHE
45
A
O
PHE
157
A
O
PHE
53
A
N
ARG
162
A
N
ARG
58
A
O
VAL
170
A
O
VAL
66
A
N
CYS
173
A
N
CYS
69
A
O
GLU
185
A
O
GLU
81
A
O
LEU
219
A
O
LEU
115
A
N
VAL
211
A
N
VAL
107
A
O
LYS
210
A
O
LYS
106
A
N
LEU
203
A
N
LEU
99
A
O
PHE
198
A
O
PHE
94
A
N
GLY
136
A
N
GLY
32
A
N
LEU
131
A
N
LEU
27
A
O
THR
248
A
O
THR
144
1
A
GLY
105
A
GLY
1
1
Y
1
A
PRO
106
A
PRO
2
1
Y
1
A
TYR
107
A
TYR
3
1
Y
1
A
GLY
108
A
GLY
4
1
Y
1
A
ALA
109
A
ALA
5
1
Y
1
A
PRO
110
A
PRO
6
1
Y
1
A
ALA
111
A
ALA
7
1
Y
1
A
GLY
112
A
GLY
8
1
Y
1
B
A
O7
O
NAG
HOH
1
749
2.14
1
A
A
O
O
HOH
HOH
681
708
2.14
1
A
ARG
129
87.10
0.46
1
A
ASN
164
-150.79
80.74
0.217
0.186
0.187
0.187
1.4
20
1212
25018
25018
4.8
Random
1
0
MAD
PDB ENTRY 1A3K
Engh & Huber
1.4
20
160
1296
29
0
1107
1.08
1.58
1.4
40
1KJL
25049
1
1
1
92.7
1.4
1.42
1
56.2
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
High Resolution X-Ray Structure of Human Galectin-3 in complex with LacNAc
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
LYS
227
A
LYS
123
HELX_P
A
ILE
231
A
ILE
127
5
1
5
covale
1.381
both
B
NAG
1
B
O4
NAG
1_555
B
GAL
2
B
C1
GAL
1_555
SUGAR BINDING PROTEIN
LacNAc complex, SUGAR BINDING PROTEIN
A
VAL
116
A
VAL
12
1
A
PRO
117
A
PRO
13
-0.10
LEG3_HUMAN
UNP
1
104
P17931
GPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGRE
ERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
104
249
1KJL
105
250
P17931
A
1
1
146
6
6
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
118
A
TYR
14
A
PRO
121
A
PRO
17
A
LYS
233
A
LYS
129
A
GLY
238
A
GLY
134
A
ILE
145
A
ILE
41
A
ARG
151
A
ARG
47
A
ASP
154
A
ASP
50
A
GLU
165
A
GLU
61
A
ARG
168
A
ARG
64
A
LEU
177
A
LEU
73
A
ASN
180
A
ASN
76
A
TRP
181
A
TRP
77
A
TYR
118
A
TYR
14
A
PRO
121
A
PRO
17
A
LYS
233
A
LYS
129
A
GLY
238
A
GLY
134
A
ILE
145
A
ILE
41
A
ARG
151
A
ARG
47
A
ASP
154
A
ASP
50
A
GLU
165
A
GLU
61
A
ARG
168
A
ARG
64
A
LEU
177
A
LEU
73
A
GLU
185
A
GLU
81
A
GLN
187
A
GLN
83
A
ALA
216
A
ALA
112
A
ASN
222
A
ASN
118
A
HIS
208
A
HIS
104
A
VAL
213
A
VAL
109
A
PRO
197
A
PRO
93
A
VAL
204
A
VAL
100
A
MET
130
A
MET
26
A
VAL
138
A
VAL
34
A
ILE
240
A
ILE
136
A
MET
249
A
MET
145
19
P 21 21 21