1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Huang, Y.J. Swapna, G.V.T. Rajan, P.K. Ke, H. Xia, B. Shukla, K. Inouye, M. Montelione, G.T. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 327 521 536 10.1016/S0022-2836(03)00061-5 12628255 Solution NMR Structure of Ribosome-binding Factor A (RbfA), A Cold-shock Adaptation Protein from Escherichia coli 2003 NE J.BIOMOL.NMR JBNME9 0800 0925-2738 21 389 390 10.1023/A:1013302924843 Resonance Assignments for Cold-shock Protein Ribosome-Binding Factor A (RbfA) from Escherichia coli. 2001 10.2210/pdb1kkg/pdb pdb_00001kkg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 12289.378 ribosome-binding factor A 1 man polymer RBFA, COLD-SHOCK ADAPTATION PROTEIN no no MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIR SLLGKAMRLRIVPELTFFYDNSLVEGMR MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIR SLLGKAMRLRIVPELTFFYDNSLVEGMR A WR90EC polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample rbfA 562 Escherichia coli 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID pET11a Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-03-18 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name BMRB 5093 IS THE 1H, 13C, 15N resonance assignments for RbfA Y RCSB Y RCSB 2001-12-07 REL REL THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY, AUTOMATED ANALYSIS OF ASSIGNMENTS AND AUTOMATED ANALYSIS OF 3D STRUCTURE. Best target function 200 16 3D_13C-separated_NOESY 3D_15N-separated_NOESY NH_HSQC_Jhahn NH_HSQC_1H/2H_exchange 10 mM 5.05 1 atm 293 K THE STRUCTURES ARE BASED ON A TOTAL OF 1970 RESTRAINTS, 1698 CONFORMATIONALLY-RESTRICTING NOE- DERIVED DISTANCE CONSTRAINTS, 184 DIHEDRAL ANGLE CONSTRAINTS, 88 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. SUMMARY OF RBFA STRUCTURE CALCULATION BY AUTOSTRUCTURE: SUMMARY OF EXPERIMENTAL CONSTRAINTS: DISTANCE CONSTRAINTS: TOTAL = 1698; INTRA-RESIDUE [I=J] = 175; SEQUENTIAL [(I-J)=1] = 454; MEDIUM RANGE [1<(I-J)<5] = 595; LONG RANGE [(I-J)>=5] = 474; NUMBER OF DISTANCE CONSTRAINTS PER RESIDUE = 15.7; DIHEDRAL-ANGLE CONSTRAINTS = 184; TOTAL HYDROGEN BOND CONSTRAINTS = 88; LONG RANGE HYDROGEN BOND CONSTRAINTS = 24; TOTAL NUMBER OF CONSTRAINTS PER RESIDUE = 18.2; NUMBER OF LONG RANGE CONSTRAINTS PER RESIDUE = 4.6; NUMBER OF STRUCTURES COMPUTED = 200; NUMBER OF STRUCTURES USED = 16. RESIDUAL CONSTRAINT VIOLATIONS: DISTANCE VIOLATIONS 0.1-0.2ANG = 31; 0.2-0.5ANG = 9; >0.5ANG = 1. MAX DISTANCE VIOLATION = 0.57ANG; AVERAGE DISTANCE VIOLATION = 0.00ANG. MAX. VDW VIOLATION = 0.37 ANG. DIHEDRAL ANGLE VIOLATIONS: 0 - 10 DEG = 6; >10 DEG = 0; MAX ANGLE VIOLATION = 9 DEG; AVERAGE ANGLE VIOLATION = 0.06 DEG. RMSD VALUES : ALL BACKBONE ATOMS OF ALL RESIDUES = 0.5 ANG; ALL BACKBONE ATOMS OF ORDERED RESIDUES = 0.5 ANG; ALL HEAVY ATOMS OF ALL RESIDUES = 1.0 ANG; ALL HEAVY ATOMS OF ORDERED RESIDUES = 1.0 ANG. PROCHECK USING ALL RESIDUES: MOST FAVORED REGIONS = 73%; ADDITIONAL ALLOWED REGIONS = 23%; GENEROUSLY ALLOWED REGIONS = 4%; DISALLOWED REGIONS = 0%. NMR R-FACTORS : M = 39% I=46% L=27% . SPECTRAL INFORMATION: TOTAL NUMBER OF PEAKS IN N15-NOESY = 1536; TOTAL NUMBER OF ASSIGNABLE PEAKS IN N15- NOESY = 1239; TOTAL NUMBER OF PEAKS ASSIGNED IN N15-NOESY = 814; TOTAL NUMBER OF PEAKS IN C13-NOESY = 3115; TOTAL NUMBER OF ASSIGNABLE PEAKS IN C13-NOESY = 2494; TOTAL NUMBER OF PEAKS ASSIGNED IN C13-NOESY = 1802. simulated annealing, torsion angle dynamics, automated analysis of NOESY data and 3D structures. 1 lowest value of target function 1.6 mM RbfA, U-15N,13C; 10 mM sodium phosphate, 0.5 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 1.6 mM RbfA, U-15N; 10 mM potassium acetate 95% H2O, 5% D2O 95% H2O/5% D2O Moseley, H., Zimmermann, D.E., Huang, Y.J., Kulikowski, C.G. and Montelione, G.T. data analysis AutoAssign 1.7.7 Huang, Y.J., Tejero, R. and Montelione, G.T. data analysis AutoStructure 1.0alpha Goddard, T.D. and Kneller, D.G. data analysis Sparky 3.69 Varian Inc. processing VNMR 6.3b Guntert, P., Mumenthaler, C. and Wuthrich, K. refinement DYANA 1.5 Cornilescu, G., Delaglio, F. and Bax, A. data analysis TALOS 98.040.21.02 500 Varian INOVA 600 Varian INOVA MET 1 n 1 MET 1 A ALA 2 n 2 ALA 2 A LYS 3 n 3 LYS 3 A GLU 4 n 4 GLU 4 A PHE 5 n 5 PHE 5 A GLY 6 n 6 GLY 6 A ARG 7 n 7 ARG 7 A PRO 8 n 8 PRO 8 A GLN 9 n 9 GLN 9 A ARG 10 n 10 ARG 10 A VAL 11 n 11 VAL 11 A ALA 12 n 12 ALA 12 A GLN 13 n 13 GLN 13 A GLU 14 n 14 GLU 14 A MET 15 n 15 MET 15 A GLN 16 n 16 GLN 16 A LYS 17 n 17 LYS 17 A GLU 18 n 18 GLU 18 A ILE 19 n 19 ILE 19 A ALA 20 n 20 ALA 20 A LEU 21 n 21 LEU 21 A ILE 22 n 22 ILE 22 A LEU 23 n 23 LEU 23 A GLN 24 n 24 GLN 24 A ARG 25 n 25 ARG 25 A GLU 26 n 26 GLU 26 A ILE 27 n 27 ILE 27 A LYS 28 n 28 LYS 28 A ASP 29 n 29 ASP 29 A PRO 30 n 30 PRO 30 A ARG 31 n 31 ARG 31 A LEU 32 n 32 LEU 32 A GLY 33 n 33 GLY 33 A MET 34 n 34 MET 34 A MET 35 n 35 MET 35 A THR 36 n 36 THR 36 A THR 37 n 37 THR 37 A VAL 38 n 38 VAL 38 A SER 39 n 39 SER 39 A GLY 40 n 40 GLY 40 A VAL 41 n 41 VAL 41 A GLU 42 n 42 GLU 42 A MET 43 n 43 MET 43 A SER 44 n 44 SER 44 A ARG 45 n 45 ARG 45 A ASP 46 n 46 ASP 46 A LEU 47 n 47 LEU 47 A ALA 48 n 48 ALA 48 A TYR 49 n 49 TYR 49 A ALA 50 n 50 ALA 50 A LYS 51 n 51 LYS 51 A VAL 52 n 52 VAL 52 A TYR 53 n 53 TYR 53 A VAL 54 n 54 VAL 54 A THR 55 n 55 THR 55 A PHE 56 n 56 PHE 56 A LEU 57 n 57 LEU 57 A ASN 58 n 58 ASN 58 A ASP 59 n 59 ASP 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ASP 63 n 63 ASP 63 A ALA 64 n 64 ALA 64 A VAL 65 n 65 VAL 65 A LYS 66 n 66 LYS 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A ILE 69 n 69 ILE 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A LEU 72 n 72 LEU 72 A GLN 73 n 73 GLN 73 A GLU 74 n 74 GLU 74 A ALA 75 n 75 ALA 75 A SER 76 n 76 SER 76 A GLY 77 n 77 GLY 77 A PHE 78 n 78 PHE 78 A ILE 79 n 79 ILE 79 A ARG 80 n 80 ARG 80 A SER 81 n 81 SER 81 A LEU 82 n 82 LEU 82 A LEU 83 n 83 LEU 83 A GLY 84 n 84 GLY 84 A LYS 85 n 85 LYS 85 A ALA 86 n 86 ALA 86 A MET 87 n 87 MET 87 A ARG 88 n 88 ARG 88 A LEU 89 n 89 LEU 89 A ARG 90 n 90 ARG 90 A ILE 91 n 91 ILE 91 A VAL 92 n 92 VAL 92 A PRO 93 n 93 PRO 93 A GLU 94 n 94 GLU 94 A LEU 95 n 95 LEU 95 A THR 96 n 96 THR 96 A PHE 97 n 97 PHE 97 A PHE 98 n 98 PHE 98 A TYR 99 n 99 TYR 99 A ASP 100 n 100 ASP 100 A ASN 101 n 101 ASN 101 A SER 102 n 102 SER 102 A LEU 103 n 103 LEU 103 A VAL 104 n 104 VAL 104 A GLU 105 n 105 GLU 105 A GLY 106 n 106 GLY 106 A MET 107 n 107 MET 107 A ARG 108 n 108 ARG 108 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 44 A N SER 44 A O TYR 49 A O TYR 49 A N VAL 54 A N VAL 54 A O PHE 98 A O PHE 98 4 A A O H LEU MET 83 87 1.58 5 A A O H LEU MET 83 87 1.58 5 A A O H ASN ASP 58 61 1.58 6 A A O H ASN ASP 58 61 1.60 8 A A O H PRO LEU 93 95 1.56 9 A A HD2 O ASP MET 29 34 1.49 9 A A HE21 OH GLN TYR 73 99 1.57 9 A A O H ASN ASP 58 61 1.60 13 A A O H GLN SER 73 76 1.54 13 A A O H ASN ASP 58 61 1.58 15 A A O H PRO LEU 93 95 1.59 16 A A O H PRO LEU 93 95 1.55 16 A A O H ASN ASP 58 61 1.55 1 A ALA 2 162.61 45.71 1 A ARG 25 -109.04 -62.08 1 A LYS 28 -101.85 73.12 1 A SER 39 -91.29 33.24 1 A LEU 47 -143.89 -71.22 1 A ALA 48 159.67 61.96 1 A SER 76 -55.12 -74.36 1 A ARG 88 22.42 78.51 1 A LEU 89 -119.25 -150.97 1 A ARG 90 -148.12 -44.69 1 A ILE 91 -37.37 -36.49 1 A VAL 92 23.75 60.12 1 A GLU 94 -67.26 66.47 1 A GLU 105 -150.13 -38.33 2 A ALA 2 -150.83 -130.70 2 A ARG 7 -57.12 177.54 2 A GLN 13 -64.79 -70.34 2 A GLU 14 -38.73 -37.38 2 A LYS 28 -102.68 72.01 2 A LEU 47 -148.26 -63.45 2 A ALA 48 163.03 70.72 2 A SER 76 -54.57 -72.73 2 A ARG 88 23.06 79.30 2 A LEU 89 -120.47 -158.08 2 A ARG 90 -141.89 -42.93 2 A ILE 91 -36.98 -35.17 2 A VAL 92 24.14 59.71 2 A GLU 94 -69.04 66.86 2 A GLU 105 -142.63 -42.31 2 A MET 107 -156.11 33.21 3 A ALA 2 179.43 167.86 3 A ARG 25 -107.02 -64.13 3 A LYS 28 -104.42 72.86 3 A LEU 47 -143.66 -71.70 3 A ALA 48 159.23 58.52 3 A SER 76 -56.65 -74.36 3 A ARG 88 22.34 77.83 3 A LEU 89 -116.60 -148.68 3 A ARG 90 -153.05 -43.24 3 A ILE 91 -37.48 -34.55 3 A VAL 92 23.42 60.44 3 A GLU 94 -67.17 64.24 3 A LEU 95 -69.96 90.54 3 A GLU 105 -160.55 -39.28 4 A LEU 47 -144.06 -70.86 4 A ALA 48 159.80 63.04 4 A SER 76 -55.25 -75.18 4 A ARG 88 22.20 83.41 4 A LEU 89 -126.58 -148.22 4 A ARG 90 -155.19 -41.57 4 A ILE 91 -36.78 -34.19 4 A VAL 92 23.59 60.21 4 A GLU 94 -66.90 65.06 4 A LEU 95 -69.16 91.62 4 A GLU 105 -154.29 -40.28 5 A ALA 2 172.57 -33.71 5 A LYS 28 -103.25 69.59 5 A THR 36 -45.42 169.50 5 A SER 39 -90.29 33.39 5 A LEU 47 -143.92 -72.90 5 A ALA 48 161.05 62.88 5 A SER 76 -52.45 -74.16 5 A ARG 88 23.45 87.48 5 A LEU 89 -125.87 -153.07 5 A ARG 90 -145.24 -44.57 5 A ILE 91 -37.58 -37.08 5 A VAL 92 24.25 60.03 5 A GLU 94 -66.76 66.19 5 A LEU 95 -69.33 89.30 5 A GLU 105 -155.93 -37.67 6 A ARG 7 -57.09 178.72 6 A LYS 28 -104.08 72.36 6 A LEU 47 -147.68 -70.93 6 A ALA 48 168.54 62.42 6 A SER 76 -56.27 -74.78 6 A ARG 88 23.22 89.94 6 A ILE 91 -39.15 -32.17 6 A VAL 92 23.68 59.40 6 A GLU 94 -67.31 69.01 6 A GLU 105 -147.51 -41.10 7 A ARG 7 -57.19 177.65 7 A LYS 28 -100.19 72.37 7 A LEU 47 -144.03 -72.03 7 A ALA 48 168.64 60.81 7 A SER 76 -55.17 -74.69 7 A ARG 88 22.85 85.94 7 A VAL 92 24.64 59.31 7 A GLU 94 -68.52 61.44 7 A LEU 95 -68.99 87.38 7 A GLU 105 -155.26 -37.46 7 A MET 107 -149.77 25.29 8 A ALA 2 168.69 76.73 8 A LYS 28 -100.25 73.17 8 A SER 39 -92.32 30.50 8 A LEU 47 -144.81 -71.05 8 A ALA 48 160.30 57.13 8 A SER 76 -58.18 -74.72 8 A ARG 88 22.36 74.44 8 A LEU 89 -112.64 -153.48 8 A ARG 90 -142.91 -46.27 8 A ILE 91 -39.92 -33.14 8 A VAL 92 23.40 61.73 8 A GLU 94 -66.99 59.43 8 A LEU 95 -69.83 90.21 8 A GLU 105 -152.22 -37.62 9 A ARG 7 -56.38 178.80 9 A ARG 25 -105.42 -65.70 9 A LYS 28 -107.85 70.71 9 A VAL 38 -117.72 79.45 9 A SER 39 -91.76 33.30 9 A LEU 47 -142.01 -61.03 9 A ALA 48 161.54 74.08 9 A SER 76 -53.61 -75.29 9 A ARG 88 22.71 85.02 9 A VAL 92 23.61 60.82 9 A GLU 94 -67.73 64.09 9 A LEU 95 -68.81 91.39 9 A GLU 105 -155.01 -36.67 10 A THR 36 -46.33 167.81 10 A LEU 47 -143.42 -72.21 10 A ALA 48 159.91 62.45 10 A ARG 88 22.45 73.58 10 A LEU 89 -114.35 -154.42 10 A ARG 90 -143.25 -43.43 10 A ILE 91 -37.23 -38.80 10 A VAL 92 22.91 59.97 10 A GLU 94 -66.68 69.69 10 A GLU 105 -148.77 -40.11 11 A GLU 4 -67.64 85.12 11 A ARG 7 -58.03 178.79 11 A GLN 13 -76.71 -71.55 11 A GLU 14 -39.37 -31.66 11 A LYS 28 -101.06 70.64 11 A MET 34 -128.56 -165.83 11 A THR 36 -43.05 155.43 11 A LEU 47 -144.56 -61.85 11 A ALA 48 164.58 80.77 11 A SER 76 -56.78 -74.82 11 A ARG 88 23.44 82.06 11 A LEU 89 -118.41 -151.17 11 A ARG 90 -149.38 -42.70 11 A ILE 91 -39.76 -28.93 11 A VAL 92 26.90 57.09 11 A GLU 94 -67.88 61.90 11 A LEU 95 -64.93 87.78 11 A GLU 105 -139.68 -38.82 11 A MET 107 -155.57 29.94 12 A ALA 2 176.11 60.95 12 A ARG 7 -57.39 178.07 12 A MET 35 -107.95 74.41 12 A THR 36 -36.00 148.29 12 A LEU 47 -144.61 -61.14 12 A ALA 48 162.34 82.04 12 A ASP 59 -39.78 -39.43 12 A SER 76 -56.57 -75.20 12 A ARG 88 22.62 75.15 12 A LEU 89 -112.43 -150.20 12 A ARG 90 -151.31 -44.31 12 A VAL 92 24.95 59.93 12 A GLU 94 -67.23 63.05 12 A LEU 95 -66.40 90.70 12 A GLU 105 -158.12 -38.88 13 A ARG 7 -58.45 178.00 13 A LYS 28 -102.39 72.84 13 A LEU 47 -144.28 -71.73 13 A ALA 48 171.14 73.77 13 A SER 76 -55.48 -71.85 13 A ARG 88 23.53 76.87 13 A ILE 91 -38.36 -33.80 13 A VAL 92 24.93 58.30 13 A GLU 94 -68.05 62.47 13 A LEU 95 -68.16 87.27 13 A GLU 105 -141.08 -39.76 14 A GLU 4 -60.50 85.49 14 A ARG 7 -59.36 177.77 14 A GLN 13 -71.18 -71.41 14 A GLU 14 -39.11 -32.61 14 A LEU 47 -145.12 -62.76 14 A ALA 48 163.22 77.83 14 A ASP 59 -39.49 -36.11 14 A SER 76 -55.85 -75.37 14 A ARG 88 22.72 76.23 14 A LEU 89 -114.50 -151.62 14 A ARG 90 -149.92 -43.37 14 A ILE 91 -39.81 -29.44 14 A VAL 92 25.51 59.42 14 A GLU 94 -67.84 62.77 14 A LEU 95 -65.79 86.97 14 A GLU 105 -145.92 -36.89 15 A ARG 7 -57.23 178.52 15 A MET 35 -115.70 73.39 15 A THR 36 -38.82 158.17 15 A LEU 47 -145.88 -66.61 15 A ALA 48 163.58 60.75 15 A SER 76 -63.10 -74.73 15 A ARG 88 22.90 74.04 15 A LEU 89 -112.08 -152.68 15 A ARG 90 -146.26 -45.13 15 A VAL 92 23.40 61.08 15 A GLU 94 -68.20 59.49 15 A LEU 95 -69.49 87.86 15 A GLU 105 -148.45 -37.68 16 A ARG 7 -56.10 178.31 16 A LEU 47 -144.36 -70.88 16 A ALA 48 160.50 56.31 16 A SER 76 -54.51 -74.93 16 A ARG 88 23.61 76.64 16 A LEU 89 -116.41 -153.08 16 A ARG 90 -145.76 -45.24 16 A VAL 92 24.59 60.24 16 A GLU 94 -66.46 59.66 16 A LEU 95 -68.41 90.05 16 A GLU 105 -155.14 -37.75 NMR Structure of Ribosome-Binding Factor A (RbfA) 1 N N A GLN 9 A GLN 9 HELX_P A LEU 23 A LEU 23 1 1 15 A GLU 62 A GLU 62 HELX_P A GLU 74 A GLU 74 5 2 13 A SER 76 A SER 76 HELX_P A ALA 86 A ALA 86 5 3 11 STRUCTURAL GENOMICS cold-shock adaptation, ribosome-binding factor, NESG Project, STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium RBFA_ECOLI UNP 1 0 P0A7G2 MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIR SLLGKAMRLRIVPELTFFYDNSLVEGMR 0 107 1KKG 1 108 P0A7G2 A 1 1 108 3 anti-parallel parallel A VAL 41 A VAL 41 A SER 44 A SER 44 A TYR 49 A TYR 49 A THR 55 A THR 55 A GLU 94 A GLU 94 A ASP 100 A ASP 100