1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zanier, K. Luyten, I. Crombie, C. Muller, B. Schuemperli, D. Linge, J.P. Nilges, M. Sattler, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK RNA RNARFU 2122 1355-8382 8 29 46 10.1017/S1355838202014061 11871659 Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 Histone mRNA 3'end Hairpin 7659.605 5'-R(*GP*GP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*C)-3' 1 syn polymer no no GGAAGGCCCUUUUCAGGGCCACCC GGAAGGCCCUUUUCAGGGCCACCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n -11.228 1 19 A 2 A 23 -4.929 A_G2:C23_A 1 32.072 0.307 -0.296 -0.079 -4.246 10 A 4 A 21 -29.176 A_A4:A21_A 2 -19.211 -6.282 -0.891 -3.686 -9.607 1 19 A 5 A 20 -1.601 A_G5:C20_A 3 -13.921 -0.488 0.046 -0.139 -9.114 1 19 A 6 A 19 -1.523 A_G6:C19_A 4 -8.537 -0.284 0.051 -0.082 -0.555 1 19 A 7 A 18 0.215 A_C7:G18_A 5 -5.625 0.422 0.231 -0.092 6.160 1 19 A 8 A 17 1.489 A_C8:G17_A 6 -13.544 0.440 -0.196 -0.092 8.347 1 19 A 9 A 16 -0.210 A_C9:G16_A 7 -8.783 0.518 -0.016 -0.127 21.557 1 20 A 10 A 15 1.251 A_U10:A15_A 8 -7.002 -0.016 -0.930 -0.015 3.882 58.287 A A 4 5 -0.631 A A 21 20 3.961 -0.614 1.871 -1.775 AA_A4G5:C20A21_AA 1 -3.115 3.199 58.208 -1.784 -2.117 2.845 31.800 A A 5 6 11.635 A A 20 19 3.253 6.335 -0.219 -1.784 AA_G5G6:C19C20_AA 2 -0.124 0.228 31.178 -4.347 0.378 3.107 31.239 A A 6 7 3.128 A A 19 18 3.211 1.683 0.437 -1.926 AA_G6C7:G18C19_AA 3 0.143 -0.266 31.194 -3.884 -0.786 2.718 31.111 A A 7 8 10.012 A A 18 17 3.103 5.311 0.188 -1.915 AA_C7C8:G17G18_AA 4 6.160 -11.614 30.055 -4.491 0.716 2.936 31.268 A A 8 9 10.141 A A 17 16 3.324 5.438 0.002 -1.990 AA_C8C9:G16G17_AA 5 -1.070 1.995 30.785 -4.685 -0.200 2.662 24.086 A A 9 10 12.235 A A 16 15 3.101 5.030 0.867 -2.346 AA_C9U10:A15G16_AA 6 5.130 -12.479 23.004 -7.078 -0.594 audit_author repository Initial release Version format compliance Version format compliance Structure summary Structure summary 1 0 2002-03-13 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-02-01 1 4 2018-01-24 _audit_author.name RCSB Y RCSB 2001-12-10 REL This sequence comes from the Histone H4-12 gene of Mus musculus. In vitro transcription using T7 RNA polymerase. sample The structure was determined using standard heteronuclear triple resonance experiments back calculated data agree with experimental NOESY spectrum, structures with acceptable covalent geometry, structures with the least restraint violations, structures with the lowest energy 100 15 3D_13C_HMQC-NOESY 3D_HCCH-E.COSY 3D_HCC-TOCSY-CCH-E.COSY spin_echo_difference_CT-HSQC HNN-COSY 10 mM sodium phosphate, 0.1 mM EDTA 6.0 ambient 298 K 10 mM sodium phosphate, 0.1 mM EDTA 6.0 ambient 285 K The structures are calculated with 451 distance restraints, 23 hydrogen bond restraints and 158 torsion angle restraints. The structures were calculated in ARIA/CNS and refined using AMBER. Molecular Dynamics/Simulated Annealing 8 lowest energy 1 mM U-15N/13C 24mer RNA 100% D2O 1 mM U-15N 24mer RNA 10% D2O / 90% H2O Bruker, Germany collection XWINNMR 2.6 Delaglio et al. processing NMRPipe 1.8 Bartels et al. data analysis XEASY 1.2 Linge, Nilges structure solution ARIA/CNS 1.0 Case et al. refinement AMBER 6.0 600 Bruker DRX 800 Bruker DRX G 1 n 1 G 1 A G 2 n 2 G 2 A A 3 n 3 A 3 A A 4 n 4 A 4 A G 5 n 5 G 5 A G 6 n 6 G 6 A C 7 n 7 C 7 A C 8 n 8 C 8 A C 9 n 9 C 9 A U 10 n 10 U 10 A U 11 n 11 U 11 A U 12 n 12 U 12 A U 13 n 13 U 13 A C 14 n 14 C 14 A A 15 n 15 A 15 A G 16 n 16 G 16 A G 17 n 17 G 17 A G 18 n 18 G 18 A C 19 n 19 C 19 A C 20 n 20 C 20 A A 21 n 21 A 21 A C 22 n 22 C 22 A C 23 n 23 C 23 A C 24 n 24 C 24 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A U 12 0.103 SIDE CHAIN 1 A U 13 0.076 SIDE CHAIN 1 A A 15 0.065 SIDE CHAIN 2 A U 12 0.083 SIDE CHAIN 3 A U 12 0.098 SIDE CHAIN 4 A G 1 0.070 SIDE CHAIN 4 A G 2 0.061 SIDE CHAIN 4 A U 12 0.097 SIDE CHAIN 4 A U 13 0.075 SIDE CHAIN 4 A C 14 0.072 SIDE CHAIN 4 A A 21 0.064 SIDE CHAIN 4 A C 24 0.069 SIDE CHAIN 5 A G 1 0.074 SIDE CHAIN 5 A A 4 0.080 SIDE CHAIN 5 A U 12 0.147 SIDE CHAIN 6 A U 12 0.086 SIDE CHAIN 6 A U 13 0.069 SIDE CHAIN 7 A U 12 0.084 SIDE CHAIN 7 A U 13 0.065 SIDE CHAIN 7 A C 22 0.063 SIDE CHAIN 8 A U 12 0.099 SIDE CHAIN 8 A U 13 0.074 SIDE CHAIN 8 A C 22 0.117 SIDE CHAIN 9 A U 12 0.152 SIDE CHAIN 9 A C 23 0.067 SIDE CHAIN 10 A A 4 0.093 SIDE CHAIN 10 A U 10 0.065 SIDE CHAIN 10 A U 12 0.087 SIDE CHAIN 10 A U 13 0.080 SIDE CHAIN 10 A C 24 0.065 SIDE CHAIN 11 A G 2 0.057 SIDE CHAIN 11 A U 12 0.092 SIDE CHAIN 11 A C 20 0.059 SIDE CHAIN 11 A C 22 0.083 SIDE CHAIN 12 A C 8 0.063 SIDE CHAIN 12 A U 12 0.088 SIDE CHAIN 12 A U 13 0.077 SIDE CHAIN 12 A C 23 0.077 SIDE CHAIN 13 A U 10 0.094 SIDE CHAIN 13 A U 12 0.107 SIDE CHAIN 13 A C 14 0.085 SIDE CHAIN 13 A C 24 0.072 SIDE CHAIN 14 A U 12 0.087 SIDE CHAIN 14 A U 13 0.064 SIDE CHAIN 14 A C 14 0.056 SIDE CHAIN 14 A A 15 0.071 SIDE CHAIN 14 A C 23 0.087 SIDE CHAIN 15 A U 12 0.102 SIDE CHAIN 15 A U 13 0.080 SIDE CHAIN 15 A C 14 0.062 SIDE CHAIN 1 -3.18 0.50 117.00 113.82 A A A C4 C5 C6 A A A 3 3 3 N 1 3.75 0.50 117.70 121.45 A A A C5 C6 N1 A A A 3 3 3 N 1 -5.42 0.60 118.60 113.18 A A A N1 C6 N6 A A A 3 3 3 N 1 3.60 0.50 117.70 121.30 A A A C5 C6 N1 A A A 4 4 4 N 1 -5.27 0.60 118.60 113.33 A A A N1 C6 N6 A A A 4 4 4 N 1 4.60 0.70 108.50 113.10 A A A O4' C1' N1 C C C 7 7 7 N 1 -4.83 0.70 121.90 117.07 A A A N3 C2 O2 C C C 7 7 7 N 1 6.89 0.90 109.80 116.69 A A A C5' C4' O4' C C C 8 8 8 N 1 -4.33 0.70 121.90 117.57 A A A N3 C2 O2 C C C 8 8 8 N 1 5.88 0.90 109.80 115.68 A A A C5' C4' O4' C C C 9 9 9 N 1 -4.45 0.70 121.90 117.45 A A A N3 C2 O2 C C C 9 9 9 N 1 4.30 0.70 108.50 112.80 A A A O4' C1' N1 U U U 10 10 10 N 1 5.63 0.80 101.50 107.13 A A A C3' C2' C1' U U U 11 11 11 N 1 4.42 0.70 108.50 112.92 A A A O4' C1' N1 U U U 12 12 12 N 1 6.27 0.70 108.50 114.77 A A A O4' C1' N1 U U U 13 13 13 N 1 -3.11 0.50 117.00 113.89 A A A C4 C5 C6 A A A 15 15 15 N 1 3.58 0.50 117.70 121.28 A A A C5 C6 N1 A A A 15 15 15 N 1 -4.77 0.60 118.60 113.83 A A A N1 C6 N6 A A A 15 15 15 N 1 -4.84 0.70 121.90 117.06 A A A N3 C2 O2 C C C 19 19 19 N 1 -4.89 0.70 121.90 117.01 A A A N3 C2 O2 C C C 20 20 20 N 1 3.52 0.50 117.70 121.22 A A A C5 C6 N1 A A A 21 21 21 N 1 -5.06 0.60 118.60 113.54 A A A N1 C6 N6 A A A 21 21 21 N 1 -4.38 0.70 121.90 117.52 A A A N3 C2 O2 C C C 22 22 22 N 1 -4.82 0.70 121.90 117.08 A A A N3 C2 O2 C C C 23 23 23 N 2 -3.15 0.50 117.00 113.85 A A A C4 C5 C6 A A A 3 3 3 N 2 3.64 0.50 117.70 121.34 A A A C5 C6 N1 A A A 3 3 3 N 2 -5.48 0.60 118.60 113.12 A A A N1 C6 N6 A A A 3 3 3 N 2 3.30 0.50 117.70 121.00 A A A C5 C6 N1 A A A 4 4 4 N 2 -4.88 0.60 118.60 113.72 A A A N1 C6 N6 A A A 4 4 4 N 2 4.54 0.70 108.50 113.04 A A A O4' C1' N1 C C C 7 7 7 N 2 -4.76 0.70 121.90 117.14 A A A N3 C2 O2 C C C 7 7 7 N 2 7.19 0.90 109.80 116.99 A A A C5' C4' O4' C C C 8 8 8 N 2 -4.22 0.70 121.90 117.68 A A A N3 C2 O2 C C C 8 8 8 N 2 5.49 0.90 109.80 115.29 A A A C5' C4' O4' C C C 9 9 9 N 2 -4.44 0.70 121.90 117.46 A A A N3 C2 O2 C C C 9 9 9 N 2 5.54 0.80 101.50 107.04 A A A C3' C2' C1' U U U 11 11 11 N 2 4.78 0.70 108.50 113.28 A A A O4' C1' N1 U U U 12 12 12 N 2 4.94 0.70 108.50 113.44 A A A O4' C1' N1 C C C 14 14 14 N 2 -4.48 0.70 121.90 117.42 A A A N3 C2 O2 C C C 14 14 14 N 2 3.48 0.50 117.70 121.18 A A A C5 C6 N1 A A A 15 15 15 N 2 -4.55 0.60 118.60 114.05 A A A N1 C6 N6 A A A 15 15 15 N 2 -4.73 0.70 121.90 117.17 A A A N3 C2 O2 C C C 19 19 19 N 2 -4.51 0.70 121.90 117.39 A A A N3 C2 O2 C C C 20 20 20 N 2 -3.02 0.50 117.00 113.98 A A A C4 C5 C6 A A A 21 21 21 N 2 3.59 0.50 117.70 121.29 A A A C5 C6 N1 A A A 21 21 21 N 2 -4.98 0.60 118.60 113.62 A A A N1 C6 N6 A A A 21 21 21 N 2 -4.93 0.70 121.90 116.97 A A A N3 C2 O2 C C C 23 23 23 N 3 4.34 0.70 108.50 112.84 A A A O4' C1' N9 A A A 3 3 3 N 3 3.76 0.50 117.70 121.46 A A A C5 C6 N1 A A A 3 3 3 N 3 -5.68 0.60 118.60 112.92 A A A N1 C6 N6 A A A 3 3 3 N 3 3.59 0.50 117.70 121.29 A A A C5 C6 N1 A A A 4 4 4 N 3 -5.24 0.60 118.60 113.36 A A A N1 C6 N6 A A A 4 4 4 N 3 4.58 0.70 108.50 113.08 A A A O4' C1' N1 C C C 7 7 7 N 3 -4.60 0.70 121.90 117.30 A A A N3 C2 O2 C C C 7 7 7 N 3 6.49 0.90 109.80 116.29 A A A C5' C4' O4' C C C 8 8 8 N 3 -4.36 0.70 121.90 117.54 A A A N3 C2 O2 C C C 8 8 8 N 3 -4.46 0.70 121.90 117.44 A A A N3 C2 O2 C C C 9 9 9 N 3 5.55 0.80 101.50 107.05 A A A C3' C2' C1' U U U 11 11 11 N 3 4.57 0.70 108.50 113.07 A A A O4' C1' N1 U U U 12 12 12 N 3 4.76 0.70 108.50 113.26 A A A O4' C1' N1 C C C 14 14 14 N 3 -4.71 0.70 121.90 117.19 A A A N3 C2 O2 C C C 14 14 14 N 3 3.43 0.50 117.70 121.13 A A A C5 C6 N1 A A A 15 15 15 N 3 -4.49 0.60 118.60 114.11 A A A N1 C6 N6 A A A 15 15 15 N 3 -4.69 0.70 121.90 117.21 A A A N3 C2 O2 C C C 19 19 19 N 3 -4.88 0.70 121.90 117.02 A A A N3 C2 O2 C C C 20 20 20 N 3 -3.03 0.50 117.00 113.97 A A A C4 C5 C6 A A A 21 21 21 N 3 3.56 0.50 117.70 121.26 A A A C5 C6 N1 A A A 21 21 21 N 3 -5.67 0.60 118.60 112.93 A A A N1 C6 N6 A A A 21 21 21 N 3 4.62 0.70 108.50 113.12 A A A O4' C1' N1 C C C 23 23 23 N 3 -5.04 0.70 121.90 116.86 A A A N3 C2 O2 C C C 23 23 23 N 4 4.63 0.70 108.50 113.13 A A A O4' C1' N9 A A A 3 3 3 N 4 3.65 0.50 117.70 121.35 A A A C5 C6 N1 A A A 3 3 3 N 4 -5.14 0.60 118.60 113.46 A A A N1 C6 N6 A A A 3 3 3 N 4 -3.07 0.50 117.00 113.93 A A A C4 C5 C6 A A A 4 4 4 N 4 3.38 0.50 117.70 121.08 A A A C5 C6 N1 A A A 4 4 4 N 4 -4.85 0.60 118.60 113.75 A A A N1 C6 N6 A A A 4 4 4 N 4 4.57 0.70 108.50 113.07 A A A O4' C1' N1 C C C 7 7 7 N 4 -4.79 0.70 121.90 117.11 A A A N3 C2 O2 C C C 7 7 7 N 4 6.93 0.90 109.80 116.73 A A A C5' C4' O4' C C C 8 8 8 N 4 5.60 0.90 109.80 115.40 A A A C5' C4' O4' C C C 9 9 9 N 4 -4.22 0.70 121.90 117.68 A A A N3 C2 O2 C C C 9 9 9 N 4 5.61 0.80 101.50 107.11 A A A C3' C2' C1' U U U 11 11 11 N 4 4.93 0.70 108.50 113.43 A A A O4' C1' N1 U U U 13 13 13 N 4 5.38 0.70 108.50 113.88 A A A O4' C1' N1 C C C 14 14 14 N 4 -3.11 0.50 117.00 113.89 A A A C4 C5 C6 A A A 15 15 15 N 4 3.61 0.50 117.70 121.31 A A A C5 C6 N1 A A A 15 15 15 N 4 -4.93 0.60 118.60 113.67 A A A N1 C6 N6 A A A 15 15 15 N 4 -4.62 0.70 121.90 117.28 A A A N3 C2 O2 C C C 19 19 19 N 4 -4.70 0.70 121.90 117.20 A A A N3 C2 O2 C C C 20 20 20 N 4 -3.03 0.50 117.00 113.97 A A A C4 C5 C6 A A A 21 21 21 N 4 3.65 0.50 117.70 121.35 A A A C5 C6 N1 A A A 21 21 21 N 4 -5.29 0.60 118.60 113.31 A A A N1 C6 N6 A A A 21 21 21 N 4 -4.76 0.70 121.90 117.14 A A A N3 C2 O2 C C C 23 23 23 N 5 6.61 0.70 108.50 115.11 A A A O4' C1' N9 A A A 3 3 3 N 5 3.95 0.50 117.70 121.65 A A A C5 C6 N1 A A A 3 3 3 N 5 -5.58 0.60 118.60 113.02 A A A N1 C6 N6 A A A 3 3 3 N 5 3.87 0.50 117.70 121.57 A A A C5 C6 N1 A A A 4 4 4 N 5 -5.63 0.60 118.60 112.97 A A A N1 C6 N6 A A A 4 4 4 N 5 4.59 0.70 108.50 113.09 A A A O4' C1' N1 C C C 7 7 7 N 5 -4.89 0.70 121.90 117.01 A A A N3 C2 O2 C C C 7 7 7 N 5 6.73 0.90 109.80 116.53 A A A C5' C4' O4' C C C 8 8 8 N 5 -4.41 0.70 121.90 117.49 A A A N3 C2 O2 C C C 8 8 8 N 5 -4.46 0.70 121.90 117.44 A A A N3 C2 O2 C C C 9 9 9 N 5 5.66 0.90 109.80 115.46 A A A C5' C4' O4' U U U 11 11 11 N 5 6.53 0.70 108.50 115.03 A A A O4' C1' N1 U U U 12 12 12 N 5 6.18 0.70 108.50 114.68 A A A O4' C1' N1 U U U 13 13 13 N 5 -3.02 0.50 117.00 113.98 A A A C4 C5 C6 A A A 15 15 15 N 5 3.61 0.50 117.70 121.31 A A A C5 C6 N1 A A A 15 15 15 N 5 -4.32 0.60 118.60 114.28 A A A N1 C6 N6 A A A 15 15 15 N 5 -4.53 0.70 121.90 117.37 A A A N3 C2 O2 C C C 19 19 19 N 5 -5.15 0.70 121.90 116.75 A A A N3 C2 O2 C C C 20 20 20 N 5 3.61 0.50 117.70 121.31 A A A C5 C6 N1 A A A 21 21 21 N 5 -5.26 0.60 118.60 113.34 A A A N1 C6 N6 A A A 21 21 21 N 5 -4.43 0.70 121.90 117.47 A A A N3 C2 O2 C C C 22 22 22 N 5 -4.92 0.70 121.90 116.98 A A A N3 C2 O2 C C C 23 23 23 N 5 -6.02 1.00 102.60 96.58 A A A C4' C3' C2' C C C 24 24 24 N 6 5.76 0.70 108.50 114.26 A A A O4' C1' N9 G G G 1 1 1 N 6 -3.02 0.50 128.60 125.58 A A A N3 C4 C5 G G G 1 1 1 N 6 3.59 0.50 117.70 121.29 A A A C5 C6 N1 A A A 3 3 3 N 6 -4.59 0.60 118.60 114.01 A A A N1 C6 N6 A A A 3 3 3 N 6 3.77 0.50 117.70 121.47 A A A C5 C6 N1 A A A 4 4 4 N 6 -5.03 0.60 118.60 113.57 A A A N1 C6 N6 A A A 4 4 4 N 6 4.91 0.70 108.50 113.41 A A A O4' C1' N1 C C C 7 7 7 N 6 -4.77 0.70 121.90 117.13 A A A N3 C2 O2 C C C 7 7 7 N 6 6.55 0.90 109.80 116.35 A A A C5' C4' O4' C C C 8 8 8 N 6 -4.24 0.70 121.90 117.66 A A A N3 C2 O2 C C C 8 8 8 N 6 5.75 0.90 109.80 115.55 A A A C5' C4' O4' C C C 9 9 9 N 6 -4.42 0.70 121.90 117.48 A A A N3 C2 O2 C C C 9 9 9 N 6 5.62 0.80 101.50 107.12 A A A C3' C2' C1' U U U 11 11 11 N 6 4.55 0.70 108.50 113.05 A A A O4' C1' N1 U U U 13 13 13 N 6 5.88 0.70 108.50 114.38 A A A O4' C1' N1 C C C 14 14 14 N 6 -4.44 0.70 121.90 117.46 A A A N3 C2 O2 C C C 14 14 14 N 6 3.46 0.50 117.70 121.16 A A A C5 C6 N1 A A A 15 15 15 N 6 -4.56 0.60 118.60 114.04 A A A N1 C6 N6 A A A 15 15 15 N 6 -4.70 0.70 121.90 117.20 A A A N3 C2 O2 C C C 19 19 19 N 6 -5.30 0.70 121.90 116.60 A A A N3 C2 O2 C C C 20 20 20 N 6 -3.03 0.50 117.00 113.97 A A A C4 C5 C6 A A A 21 21 21 N 6 3.61 0.50 117.70 121.31 A A A C5 C6 N1 A A A 21 21 21 N 6 -5.35 0.60 118.60 113.25 A A A N1 C6 N6 A A A 21 21 21 N 6 -4.64 0.70 121.90 117.26 A A A N3 C2 O2 C C C 23 23 23 N 7 3.59 0.50 117.70 121.29 A A A C5 C6 N1 A A A 3 3 3 N 7 -5.26 0.60 118.60 113.34 A A A N1 C6 N6 A A A 3 3 3 N 7 -3.13 0.50 117.00 113.87 A A A C4 C5 C6 A A A 4 4 4 N 7 3.66 0.50 117.70 121.36 A A A C5 C6 N1 A A A 4 4 4 N 7 -6.03 0.60 118.60 112.57 A A A N1 C6 N6 A A A 4 4 4 N 7 4.37 0.70 108.50 112.87 A A A O4' C1' N1 C C C 7 7 7 N 7 -4.70 0.70 121.90 117.20 A A A N3 C2 O2 C C C 7 7 7 N 7 6.67 0.90 109.80 116.47 A A A C5' C4' O4' C C C 8 8 8 N 7 -4.24 0.70 121.90 117.66 A A A N3 C2 O2 C C C 8 8 8 N 7 5.41 0.90 109.80 115.21 A A A C5' C4' O4' C C C 9 9 9 N 7 -4.48 0.70 121.90 117.42 A A A N3 C2 O2 C C C 9 9 9 N 7 5.62 0.80 101.50 107.12 A A A C3' C2' C1' U U U 11 11 11 N 7 4.38 0.70 108.50 112.88 A A A O4' C1' N1 U U U 13 13 13 N 7 5.89 0.70 108.50 114.39 A A A O4' C1' N1 C C C 14 14 14 N 7 -4.55 0.70 121.90 117.35 A A A N3 C2 O2 C C C 14 14 14 N 7 -3.14 0.50 117.00 113.86 A A A C4 C5 C6 A A A 15 15 15 N 7 3.62 0.50 117.70 121.32 A A A C5 C6 N1 A A A 15 15 15 N 7 -4.68 0.60 118.60 113.92 A A A N1 C6 N6 A A A 15 15 15 N 7 -4.72 0.70 121.90 117.18 A A A N3 C2 O2 C C C 19 19 19 N 7 -5.06 0.70 121.90 116.84 A A A N3 C2 O2 C C C 20 20 20 N 7 3.58 0.50 117.70 121.28 A A A C5 C6 N1 A A A 21 21 21 N 7 -5.16 0.60 118.60 113.44 A A A N1 C6 N6 A A A 21 21 21 N 7 5.76 0.70 108.50 114.26 A A A O4' C1' N1 C C C 22 22 22 N 7 -4.89 0.70 121.90 117.01 A A A N3 C2 O2 C C C 22 22 22 N 7 3.69 0.60 118.90 122.59 A A A N1 C2 O2 C C C 23 23 23 N 7 -5.01 0.70 121.90 116.89 A A A N3 C2 O2 C C C 23 23 23 N 8 4.49 0.70 108.50 112.99 A A A O4' C1' N9 A A A 3 3 3 N 8 3.84 0.50 117.70 121.54 A A A C5 C6 N1 A A A 3 3 3 N 8 -5.70 0.60 118.60 112.90 A A A N1 C6 N6 A A A 3 3 3 N 8 -3.10 0.50 117.00 113.90 A A A C4 C5 C6 A A A 4 4 4 N 8 3.38 0.50 117.70 121.08 A A A C5 C6 N1 A A A 4 4 4 N 8 -4.92 0.60 118.60 113.68 A A A N1 C6 N6 A A A 4 4 4 N 8 4.38 0.70 108.50 112.88 A A A O4' C1' N1 C C C 7 7 7 N 8 -4.92 0.70 121.90 116.98 A A A N3 C2 O2 C C C 7 7 7 N 8 7.02 0.90 109.80 116.82 A A A C5' C4' O4' C C C 8 8 8 N 8 5.55 0.90 109.80 115.35 A A A C5' C4' O4' C C C 9 9 9 N 8 -4.40 0.70 121.90 117.50 A A A N3 C2 O2 C C C 9 9 9 N 8 5.71 0.80 101.50 107.21 A A A C3' C2' C1' U U U 11 11 11 N 8 4.60 0.70 108.50 113.10 A A A O4' C1' N1 U U U 12 12 12 N 8 6.30 0.70 108.50 114.80 A A A O4' C1' N1 U U U 13 13 13 N 8 -3.16 0.50 117.00 113.84 A A A C4 C5 C6 A A A 15 15 15 N 8 3.65 0.50 117.70 121.35 A A A C5 C6 N1 A A A 15 15 15 N 8 -4.91 0.60 118.60 113.69 A A A N1 C6 N6 A A A 15 15 15 N 8 -4.58 0.70 121.90 117.32 A A A N3 C2 O2 C C C 19 19 19 N 8 -4.62 0.70 121.90 117.28 A A A N3 C2 O2 C C C 20 20 20 N 8 -3.12 0.50 117.00 113.88 A A A C4 C5 C6 A A A 21 21 21 N 8 3.71 0.50 117.70 121.41 A A A C5 C6 N1 A A A 21 21 21 N 8 -5.39 0.60 118.60 113.21 A A A N1 C6 N6 A A A 21 21 21 N 8 -5.14 0.70 121.90 116.76 A A A N3 C2 O2 C C C 23 23 23 N 8 -4.22 0.70 121.90 117.68 A A A N3 C2 O2 C C C 24 24 24 N 9 -3.06 0.50 117.00 113.94 A A A C4 C5 C6 A A A 3 3 3 N 9 3.66 0.50 117.70 121.36 A A A C5 C6 N1 A A A 3 3 3 N 9 -5.41 0.60 118.60 113.19 A A A N1 C6 N6 A A A 3 3 3 N 9 3.78 0.50 117.70 121.48 A A A C5 C6 N1 A A A 4 4 4 N 9 -4.92 0.60 118.60 113.68 A A A N1 C6 N6 A A A 4 4 4 N 9 4.54 0.70 108.50 113.04 A A A O4' C1' N1 C C C 7 7 7 N 9 -4.81 0.70 121.90 117.09 A A A N3 C2 O2 C C C 7 7 7 N 9 7.17 0.90 109.80 116.97 A A A C5' C4' O4' C C C 8 8 8 N 9 -4.37 0.70 121.90 117.53 A A A N3 C2 O2 C C C 8 8 8 N 9 -4.27 0.70 121.90 117.63 A A A N3 C2 O2 C C C 9 9 9 N 9 -4.54 0.70 109.70 105.16 A A A C1' O4' C4' U U U 12 12 12 N 9 7.31 0.70 108.50 115.81 A A A O4' C1' N1 U U U 12 12 12 N 9 5.81 0.70 108.50 114.31 A A A O4' C1' N1 U U U 13 13 13 N 9 -3.14 0.50 117.00 113.86 A A A C4 C5 C6 A A A 15 15 15 N 9 3.53 0.50 117.70 121.23 A A A C5 C6 N1 A A A 15 15 15 N 9 -4.60 0.60 118.60 114.00 A A A N1 C6 N6 A A A 15 15 15 N 9 -4.72 0.70 121.90 117.18 A A A N3 C2 O2 C C C 19 19 19 N 9 -4.84 0.70 121.90 117.06 A A A N3 C2 O2 C C C 20 20 20 N 9 3.50 0.50 117.70 121.20 A A A C5 C6 N1 A A A 21 21 21 N 9 -5.01 0.60 118.60 113.59 A A A N1 C6 N6 A A A 21 21 21 N 9 -4.89 0.70 121.90 117.01 A A A N3 C2 O2 C C C 23 23 23 N 10 5.93 0.70 108.50 114.43 A A A O4' C1' N9 G G G 1 1 1 N 10 -3.06 0.50 117.00 113.94 A A A C4 C5 C6 A A A 3 3 3 N 10 3.62 0.50 117.70 121.32 A A A C5 C6 N1 A A A 3 3 3 N 10 -5.33 0.60 118.60 113.27 A A A N1 C6 N6 A A A 3 3 3 N 10 -3.17 0.50 117.00 113.83 A A A C4 C5 C6 A A A 4 4 4 N 10 3.53 0.50 117.70 121.23 A A A C5 C6 N1 A A A 4 4 4 N 10 -5.79 0.60 118.60 112.81 A A A N1 C6 N6 A A A 4 4 4 N 10 4.63 0.70 108.50 113.13 A A A O4' C1' N1 C C C 7 7 7 N 10 -4.66 0.70 121.90 117.24 A A A N3 C2 O2 C C C 7 7 7 N 10 7.42 0.90 109.80 117.22 A A A C5' C4' O4' C C C 8 8 8 N 10 5.59 0.90 109.80 115.39 A A A C5' C4' O4' C C C 9 9 9 N 10 -4.45 0.70 121.90 117.45 A A A N3 C2 O2 C C C 9 9 9 N 10 5.73 0.80 101.50 107.23 A A A C3' C2' C1' U U U 11 11 11 N 10 5.38 0.70 108.50 113.88 A A A O4' C1' N1 U U U 12 12 12 N 10 6.20 0.70 108.50 114.70 A A A O4' C1' N1 U U U 13 13 13 N 10 -3.14 0.50 117.00 113.86 A A A C4 C5 C6 A A A 15 15 15 N 10 3.63 0.50 117.70 121.33 A A A C5 C6 N1 A A A 15 15 15 N 10 -4.97 0.60 118.60 113.63 A A A N1 C6 N6 A A A 15 15 15 N 10 -4.81 0.70 121.90 117.09 A A A N3 C2 O2 C C C 19 19 19 N 10 -4.89 0.70 121.90 117.01 A A A N3 C2 O2 C C C 20 20 20 N 10 -3.17 0.50 117.00 113.83 A A A C4 C5 C6 A A A 21 21 21 N 10 3.53 0.50 117.70 121.23 A A A C5 C6 N1 A A A 21 21 21 N 10 -5.32 0.60 118.60 113.28 A A A N1 C6 N6 A A A 21 21 21 N 10 4.59 0.70 108.50 113.09 A A A O4' C1' N1 C C C 22 22 22 N 10 4.30 0.70 108.50 112.80 A A A O4' C1' N1 C C C 23 23 23 N 10 -4.77 0.70 121.90 117.13 A A A N3 C2 O2 C C C 23 23 23 N 11 3.53 0.50 117.70 121.23 A A A C5 C6 N1 A A A 3 3 3 N 11 -5.31 0.60 118.60 113.29 A A A N1 C6 N6 A A A 3 3 3 N 11 3.62 0.50 117.70 121.32 A A A C5 C6 N1 A A A 4 4 4 N 11 -5.33 0.60 118.60 113.27 A A A N1 C6 N6 A A A 4 4 4 N 11 4.74 0.70 108.50 113.24 A A A O4' C1' N1 C C C 7 7 7 N 11 -4.68 0.70 121.90 117.22 A A A N3 C2 O2 C C C 7 7 7 N 11 6.84 0.90 109.80 116.64 A A A C5' C4' O4' C C C 8 8 8 N 11 -4.54 0.70 121.90 117.36 A A A N3 C2 O2 C C C 9 9 9 N 11 5.60 0.80 101.50 107.10 A A A C3' C2' C1' U U U 11 11 11 N 11 4.73 0.70 108.50 113.23 A A A O4' C1' N1 U U U 12 12 12 N 11 -4.23 0.70 101.30 97.07 A A A C3' C2' C1' U U U 13 13 13 N 11 -4.82 0.70 121.90 117.08 A A A N3 C2 O2 C C C 14 14 14 N 11 -3.33 0.50 117.00 113.67 A A A C4 C5 C6 A A A 15 15 15 N 11 3.45 0.50 117.70 121.15 A A A C5 C6 N1 A A A 15 15 15 N 11 -4.93 0.60 118.60 113.67 A A A N1 C6 N6 A A A 15 15 15 N 11 -4.63 0.70 121.90 117.27 A A A N3 C2 O2 C C C 19 19 19 N 11 -4.40 0.70 121.90 117.50 A A A N3 C2 O2 C C C 20 20 20 N 11 3.60 0.50 117.70 121.30 A A A C5 C6 N1 A A A 21 21 21 N 11 -5.45 0.60 118.60 113.15 A A A N1 C6 N6 A A A 21 21 21 N 11 4.28 0.70 108.50 112.78 A A A O4' C1' N1 C C C 22 22 22 N 11 -4.32 0.70 121.90 117.58 A A A N3 C2 O2 C C C 22 22 22 N 11 -5.11 0.70 121.90 116.79 A A A N3 C2 O2 C C C 23 23 23 N 12 4.97 0.70 108.50 113.47 A A A O4' C1' N9 G G G 1 1 1 N 12 -3.01 0.50 128.60 125.59 A A A N3 C4 C5 G G G 1 1 1 N 12 3.67 0.50 117.70 121.37 A A A C5 C6 N1 A A A 3 3 3 N 12 -5.03 0.60 118.60 113.57 A A A N1 C6 N6 A A A 3 3 3 N 12 3.70 0.50 117.70 121.40 A A A C5 C6 N1 A A A 4 4 4 N 12 -5.04 0.60 118.60 113.56 A A A N1 C6 N6 A A A 4 4 4 N 12 5.13 0.70 108.50 113.63 A A A O4' C1' N1 C C C 7 7 7 N 12 -4.91 0.70 121.90 116.99 A A A N3 C2 O2 C C C 7 7 7 N 12 7.12 0.90 109.80 116.92 A A A C5' C4' O4' C C C 8 8 8 N 12 -4.26 0.70 121.90 117.64 A A A N3 C2 O2 C C C 8 8 8 N 12 5.50 0.90 109.80 115.30 A A A C5' C4' O4' C C C 9 9 9 N 12 -4.30 0.70 121.90 117.60 A A A N3 C2 O2 C C C 9 9 9 N 12 5.79 0.80 101.50 107.29 A A A C3' C2' C1' U U U 11 11 11 N 12 6.14 0.70 108.50 114.64 A A A O4' C1' N1 C C C 14 14 14 N 12 -4.72 0.70 121.90 117.18 A A A N3 C2 O2 C C C 14 14 14 N 12 -3.04 0.50 117.00 113.96 A A A C4 C5 C6 A A A 15 15 15 N 12 3.55 0.50 117.70 121.25 A A A C5 C6 N1 A A A 15 15 15 N 12 -4.91 0.60 118.60 113.69 A A A N1 C6 N6 A A A 15 15 15 N 12 -4.83 0.70 121.90 117.07 A A A N3 C2 O2 C C C 19 19 19 N 12 -5.17 0.70 121.90 116.73 A A A N3 C2 O2 C C C 20 20 20 N 12 -3.54 0.50 117.00 113.46 A A A C4 C5 C6 A A A 21 21 21 N 12 3.96 0.50 117.70 121.66 A A A C5 C6 N1 A A A 21 21 21 N 12 -6.77 0.60 118.60 111.83 A A A N1 C6 N6 A A A 21 21 21 N 12 -4.32 0.70 121.90 117.58 A A A N3 C2 O2 C C C 22 22 22 N 12 -4.76 0.70 121.90 117.14 A A A N3 C2 O2 C C C 23 23 23 N 13 5.17 0.70 108.50 113.67 A A A O4' C1' N9 G G G 1 1 1 N 13 -3.08 0.50 128.60 125.52 A A A N3 C4 C5 G G G 1 1 1 N 13 3.80 0.50 117.70 121.50 A A A C5 C6 N1 A A A 3 3 3 N 13 -5.46 0.60 118.60 113.14 A A A N1 C6 N6 A A A 3 3 3 N 13 3.75 0.50 117.70 121.45 A A A C5 C6 N1 A A A 4 4 4 N 13 -5.61 0.60 118.60 112.99 A A A N1 C6 N6 A A A 4 4 4 N 13 4.71 0.70 108.50 113.21 A A A O4' C1' N1 C C C 7 7 7 N 13 -4.70 0.70 121.90 117.20 A A A N3 C2 O2 C C C 7 7 7 N 13 7.13 0.90 109.80 116.93 A A A C5' C4' O4' C C C 8 8 8 N 13 -4.29 0.70 121.90 117.61 A A A N3 C2 O2 C C C 8 8 8 N 13 5.67 0.90 109.80 115.47 A A A C5' C4' O4' C C C 9 9 9 N 13 -4.33 0.70 121.90 117.57 A A A N3 C2 O2 C C C 9 9 9 N 13 6.73 0.80 101.50 108.23 A A A C3' C2' C1' U U U 11 11 11 N 13 6.55 0.70 108.50 115.05 A A A O4' C1' N1 U U U 12 12 12 N 13 -4.47 0.70 101.30 96.83 A A A C3' C2' C1' U U U 13 13 13 N 13 -4.64 0.70 121.90 117.26 A A A N3 C2 O2 C C C 14 14 14 N 13 4.91 0.70 108.50 113.41 A A A O4' C1' N9 A A A 15 15 15 N 13 -3.75 0.50 117.00 113.25 A A A C4 C5 C6 A A A 15 15 15 N 13 3.76 0.50 117.70 121.46 A A A C5 C6 N1 A A A 15 15 15 N 13 4.39 0.70 132.30 136.69 A A A C6 C5 N7 A A A 15 15 15 N 13 -7.48 0.60 118.60 111.12 A A A N1 C6 N6 A A A 15 15 15 N 13 4.41 0.70 108.50 112.91 A A A O4' C1' N9 G G G 16 16 16 N 13 -4.48 0.70 121.90 117.42 A A A N3 C2 O2 C C C 19 19 19 N 13 -4.43 0.70 121.90 117.47 A A A N3 C2 O2 C C C 20 20 20 N 13 -3.02 0.50 117.00 113.98 A A A C4 C5 C6 A A A 21 21 21 N 13 3.66 0.50 117.70 121.36 A A A C5 C6 N1 A A A 21 21 21 N 13 -5.29 0.60 118.60 113.31 A A A N1 C6 N6 A A A 21 21 21 N 13 -4.50 0.70 121.90 117.40 A A A N3 C2 O2 C C C 22 22 22 N 13 4.65 0.70 108.50 113.15 A A A O4' C1' N1 C C C 23 23 23 N 13 -4.85 0.70 121.90 117.05 A A A N3 C2 O2 C C C 23 23 23 N 14 3.70 0.50 117.70 121.40 A A A C5 C6 N1 A A A 3 3 3 N 14 -5.43 0.60 118.60 113.17 A A A N1 C6 N6 A A A 3 3 3 N 14 3.55 0.50 117.70 121.25 A A A C5 C6 N1 A A A 4 4 4 N 14 -5.05 0.60 118.60 113.55 A A A N1 C6 N6 A A A 4 4 4 N 14 4.84 0.70 108.50 113.34 A A A O4' C1' N1 C C C 7 7 7 N 14 -4.78 0.70 121.90 117.12 A A A N3 C2 O2 C C C 7 7 7 N 14 6.69 0.90 109.80 116.49 A A A C5' C4' O4' C C C 8 8 8 N 14 5.93 0.90 109.80 115.73 A A A C5' C4' O4' C C C 9 9 9 N 14 -4.46 0.70 121.90 117.44 A A A N3 C2 O2 C C C 9 9 9 N 14 5.82 0.80 101.50 107.32 A A A C3' C2' C1' U U U 11 11 11 N 14 4.60 0.70 108.50 113.10 A A A O4' C1' N1 U U U 12 12 12 N 14 6.36 0.70 108.50 114.86 A A A O4' C1' N1 U U U 13 13 13 N 14 -3.08 0.50 117.00 113.92 A A A C4 C5 C6 A A A 15 15 15 N 14 3.47 0.50 117.70 121.17 A A A C5 C6 N1 A A A 15 15 15 N 14 -4.71 0.60 118.60 113.89 A A A N1 C6 N6 A A A 15 15 15 N 14 -4.69 0.70 121.90 117.21 A A A N3 C2 O2 C C C 19 19 19 N 14 3.66 0.60 118.90 122.56 A A A N1 C2 O2 C C C 20 20 20 N 14 -5.29 0.70 121.90 116.61 A A A N3 C2 O2 C C C 20 20 20 N 14 -3.21 0.50 117.00 113.79 A A A C4 C5 C6 A A A 21 21 21 N 14 3.76 0.50 117.70 121.46 A A A C5 C6 N1 A A A 21 21 21 N 14 -5.69 0.60 118.60 112.91 A A A N1 C6 N6 A A A 21 21 21 N 14 -5.11 0.70 121.90 116.79 A A A N3 C2 O2 C C C 23 23 23 N 14 -4.24 0.70 121.90 117.66 A A A N3 C2 O2 C C C 24 24 24 N 15 5.14 0.70 108.50 113.64 A A A O4' C1' N9 A A A 3 3 3 N 15 3.87 0.50 117.70 121.57 A A A C5 C6 N1 A A A 3 3 3 N 15 -5.43 0.60 118.60 113.17 A A A N1 C6 N6 A A A 3 3 3 N 15 -3.03 0.50 117.00 113.97 A A A C4 C5 C6 A A A 4 4 4 N 15 3.75 0.50 117.70 121.45 A A A C5 C6 N1 A A A 4 4 4 N 15 -4.76 0.60 118.60 113.84 A A A N1 C6 N6 A A A 4 4 4 N 15 4.54 0.70 108.50 113.04 A A A O4' C1' N1 C C C 7 7 7 N 15 -4.47 0.70 121.90 117.43 A A A N3 C2 O2 C C C 7 7 7 N 15 7.35 0.90 109.80 117.15 A A A C5' C4' O4' C C C 8 8 8 N 15 -4.36 0.70 121.90 117.54 A A A N3 C2 O2 C C C 8 8 8 N 15 5.65 0.90 109.80 115.45 A A A C5' C4' O4' C C C 9 9 9 N 15 -4.33 0.70 121.90 117.57 A A A N3 C2 O2 C C C 9 9 9 N 15 5.54 0.80 101.50 107.04 A A A C3' C2' C1' U U U 11 11 11 N 15 4.25 0.70 108.50 112.75 A A A O4' C1' N1 U U U 12 12 12 N 15 5.02 0.70 108.50 113.52 A A A O4' C1' N1 U U U 13 13 13 N 15 5.55 0.70 108.50 114.05 A A A O4' C1' N1 C C C 14 14 14 N 15 -4.31 0.70 121.90 117.59 A A A N3 C2 O2 C C C 14 14 14 N 15 -3.32 0.50 117.00 113.68 A A A C4 C5 C6 A A A 15 15 15 N 15 3.58 0.50 117.70 121.28 A A A C5 C6 N1 A A A 15 15 15 N 15 -4.96 0.60 118.60 113.64 A A A N1 C6 N6 A A A 15 15 15 N 15 -4.60 0.70 121.90 117.30 A A A N3 C2 O2 C C C 19 19 19 N 15 -4.79 0.70 121.90 117.11 A A A N3 C2 O2 C C C 20 20 20 N 15 -3.02 0.50 117.00 113.98 A A A C4 C5 C6 A A A 21 21 21 N 15 3.59 0.50 117.70 121.29 A A A C5 C6 N1 A A A 21 21 21 N 15 -5.18 0.60 118.60 113.42 A A A N1 C6 N6 A A A 21 21 21 N 15 -4.24 0.70 121.90 117.66 A A A N3 C2 O2 C C C 22 22 22 N 15 4.59 0.70 108.50 113.09 A A A O4' C1' N1 C C C 23 23 23 N 15 -4.75 0.70 121.90 117.15 A A A N3 C2 O2 C C C 23 23 23 N 5'-R(*GP*GP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*C)-3' Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression 1 N N hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 23 A N3 C 23 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 23 A O2 C 23 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 23 A N4 C 23 1_555 hydrog A-A MISPAIR A A 4 A N6 A 4 1_555 A A 21 A N3 A 21 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 20 A N3 C 20 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 20 A O2 C 20 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 20 A N4 C 20 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 A C 19 A N3 C 19 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 A C 19 A O2 C 19 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 A C 19 A N4 C 19 1_555 hydrog WATSON-CRICK A C 7 A N3 C 7 1_555 A G 18 A N1 G 18 1_555 hydrog WATSON-CRICK A C 7 A N4 C 7 1_555 A G 18 A O6 G 18 1_555 hydrog WATSON-CRICK A C 7 A O2 C 7 1_555 A G 18 A N2 G 18 1_555 hydrog WATSON-CRICK A C 8 A N3 C 8 1_555 A G 17 A N1 G 17 1_555 hydrog WATSON-CRICK A C 8 A N4 C 8 1_555 A G 17 A O6 G 17 1_555 hydrog WATSON-CRICK A C 8 A O2 C 8 1_555 A G 17 A N2 G 17 1_555 hydrog WATSON-CRICK A C 9 A N3 C 9 1_555 A G 16 A N1 G 16 1_555 hydrog WATSON-CRICK A C 9 A N4 C 9 1_555 A G 16 A O6 G 16 1_555 hydrog WATSON-CRICK A C 9 A O2 C 9 1_555 A G 16 A N2 G 16 1_555 hydrog WATSON-CRICK A U 10 A N3 U 10 1_555 A A 15 A N1 A 15 1_555 hydrog WATSON-CRICK A U 10 A O4 U 10 1_555 A A 15 A N6 A 15 1_555 RNA RNA HAIRPIN, HISTONE mRNA, RNA PROCESSING, RNA 1KKS PDB 1 1KKS 1 24 1KKS 1 24 1KKS A 1 1 24