1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Isaacs, R.J. Spielmann, H.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 319 191 207 10.1016/S0022-2836(02)00265-6 12051946 Structural differences in the NOE-derived structure of G-T mismatched DNA relative to normal DNA are correlated with differences in (13)C relaxation-based internal dynamics. 2002 10.2210/pdb1kkw/pdb pdb_00001kkw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 3061.003 5'-D(*CP*CP*AP*TP*GP*CP*GP*TP*GP*G)-3' 2 syn polymer no no (DC)(DC)(DA)(DT)(DG)(DC)(DG)(DT)(DG)(DG) CCATGCGTGG A,B polydeoxyribonucleotide n n n n n n n n n n -2.649 1 19 A 1 B 10 -9.093 A_DC1:DG10_B 1 -17.914 -0.393 0.956 -0.252 6.921 1 19 A 2 B 9 -0.642 A_DC2:DG9_B 2 -16.098 1.007 0.398 -0.333 -9.719 1 20 A 3 B 8 -4.076 A_DA3:DT8_B 3 -18.336 -0.371 0.212 -0.164 -19.995 1 28 A 4 B 7 -13.126 A_DT4:DG7_B 4 -11.593 1.171 0.822 -0.468 5.866 1 19 A 5 B 6 -5.915 A_DG5:DC6_B 5 -5.378 -0.549 1.007 -0.358 -3.779 1 19 A 6 B 5 -5.319 A_DC6:DG5_B 6 -5.530 0.350 0.958 -0.284 20.855 1 28 A 7 B 4 -12.755 A_DG7:DT4_B 7 -12.292 -1.169 0.818 -0.445 10.369 1 20 A 8 B 3 -3.610 A_DT8:DA3_B 8 -19.317 0.380 0.179 -0.166 -7.905 1 19 A 9 B 2 -0.453 A_DG9:DC2_B 9 -16.064 -1.017 0.381 -0.332 1.898 1 19 A 10 B 1 -9.003 A_DG10:DC1_B 10 -17.546 0.398 0.948 -0.248 2.984 40.637 A A 1 2 0.387 B B 10 9 2.979 0.267 0.334 -0.689 AA_DC1DC2:DG9DG10_BB 1 8.030 -11.633 39.868 -1.019 0.341 2.781 33.118 A A 2 3 15.219 B B 9 8 3.168 8.581 -0.609 -1.161 AA_DC2DA3:DT8DG9_BB 2 -0.511 0.906 32.013 -3.376 0.989 3.503 41.301 A A 3 4 -3.396 B B 8 7 3.403 -2.385 -0.721 -0.628 AA_DA3DT4:DG7DT8_BB 3 -6.524 9.290 40.738 -0.618 0.277 2.096 25.664 A A 4 5 6.656 B B 7 6 2.155 2.946 0.855 -0.983 AA_DT4DG5:DC6DG7_BB 4 2.258 -5.100 25.399 -2.756 -1.508 3.543 36.321 A A 5 6 -5.214 B B 6 5 3.474 -3.246 0.046 -0.946 AA_DG5DC6:DG5DC6_BB 5 0.299 -0.480 36.179 -1.030 -0.028 2.152 25.981 A A 6 7 5.991 B B 5 4 2.191 2.683 -0.815 -1.026 AA_DC6DG7:DT4DG5_BB 6 -2.900 6.475 25.684 -2.775 1.281 3.503 41.510 A A 7 8 -3.346 B B 4 3 3.401 -2.361 0.720 -0.671 AA_DG7DT8:DA3DT4_BB 7 6.737 -9.549 40.918 -0.679 -0.254 2.803 32.994 A A 8 9 15.561 B B 3 2 3.215 8.738 0.577 -1.192 AA_DT8DG9:DC2DA3_BB 8 0.259 -0.462 31.846 -3.489 -0.975 2.993 40.730 A A 9 10 0.226 B B 2 1 2.979 0.156 -0.375 -0.684 AA_DG9DG10:DC1DC2_BB 9 -8.130 11.753 39.944 -0.998 -0.290 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-06-19 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name NMR Solution Structure of d(CCACGCGTGG)2, parent to G-T mismatch structure RCSB Y RCSB 2001-12-10 REL REL synthesized from phosphoramadites on solid support sample all calculated structures submitted, back calculated data agree with experimental NOESY spectrum 20 20 2D NOESY 200 mM NaCl, 20 mM NaPO4, 10 mM NaN3, 0.1 mM EDTA 7.0 ambient 298 K simulated annealing 1 closest to the average 4 mM double strand DNA 99.96% D2O varian, inc. collection VNMR 6b accelrys data analysis Felix 98.0 James, T.L. iterative matrix relaxation MARDIGRAS 1 accelrys structure solution Discover 2.98 accelrys refinement Discover 2.98 500 Varian INOVA C 1 n 1 DC 1 A C 2 n 2 DC 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A G 5 n 5 DG 5 A C 6 n 6 DC 6 A G 7 n 7 DG 7 A T 8 n 8 DT 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A C 1 n 1 DC 1 B C 2 n 2 DC 2 B A 3 n 3 DA 3 B T 4 n 4 DT 4 B G 5 n 5 DG 5 B C 6 n 6 DC 6 B G 7 n 7 DG 7 B T 8 n 8 DT 8 B G 9 n 9 DG 9 B G 10 n 10 DG 10 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DC 2 0.066 SIDE CHAIN 1 A DA 3 0.059 SIDE CHAIN 1 A DG 9 0.070 SIDE CHAIN 1 B DC 2 0.065 SIDE CHAIN 1 B DA 3 0.054 SIDE CHAIN 1 B DG 9 0.069 SIDE CHAIN 2 A DC 2 0.066 SIDE CHAIN 2 A DA 3 0.058 SIDE CHAIN 2 A DG 9 0.071 SIDE CHAIN 2 B DC 2 0.065 SIDE CHAIN 2 B DA 3 0.053 SIDE CHAIN 2 B DG 9 0.068 SIDE CHAIN 3 A DC 2 0.066 SIDE CHAIN 3 A DA 3 0.060 SIDE CHAIN 3 A DG 9 0.070 SIDE CHAIN 3 B DC 2 0.065 SIDE CHAIN 3 B DA 3 0.054 SIDE CHAIN 3 B DG 9 0.070 SIDE CHAIN 4 A DA 3 0.056 SIDE CHAIN 4 A DG 9 0.071 SIDE CHAIN 4 B DC 2 0.065 SIDE CHAIN 4 B DA 3 0.055 SIDE CHAIN 4 B DG 9 0.070 SIDE CHAIN 4 B DG 10 0.054 SIDE CHAIN 5 A DC 2 0.065 SIDE CHAIN 5 A DA 3 0.057 SIDE CHAIN 5 A DG 9 0.069 SIDE CHAIN 5 B DC 2 0.064 SIDE CHAIN 5 B DA 3 0.053 SIDE CHAIN 5 B DG 9 0.067 SIDE CHAIN 6 A DC 2 0.066 SIDE CHAIN 6 A DA 3 0.058 SIDE CHAIN 6 A DG 9 0.071 SIDE CHAIN 6 B DC 2 0.065 SIDE CHAIN 6 B DA 3 0.054 SIDE CHAIN 6 B DG 9 0.068 SIDE CHAIN 7 A DC 2 0.065 SIDE CHAIN 7 A DA 3 0.058 SIDE CHAIN 7 A DG 9 0.090 SIDE CHAIN 7 B DC 2 0.064 SIDE CHAIN 7 B DA 3 0.055 SIDE CHAIN 7 B DG 9 0.069 SIDE CHAIN 8 A DC 2 0.066 SIDE CHAIN 8 A DA 3 0.058 SIDE CHAIN 8 A DG 9 0.070 SIDE CHAIN 8 B DC 2 0.065 SIDE CHAIN 8 B DA 3 0.054 SIDE CHAIN 8 B DG 9 0.069 SIDE CHAIN 9 A DC 2 0.066 SIDE CHAIN 9 A DA 3 0.058 SIDE CHAIN 9 A DG 9 0.063 SIDE CHAIN 9 B DA 3 0.052 SIDE CHAIN 9 B DG 9 0.070 SIDE CHAIN 10 A DC 2 0.065 SIDE CHAIN 10 A DA 3 0.058 SIDE CHAIN 10 A DG 9 0.061 SIDE CHAIN 10 B DC 1 0.056 SIDE CHAIN 10 B DG 9 0.068 SIDE CHAIN 11 A DC 2 0.065 SIDE CHAIN 11 A DA 3 0.058 SIDE CHAIN 11 A DG 9 0.064 SIDE CHAIN 11 B DA 3 0.053 SIDE CHAIN 11 B DG 9 0.068 SIDE CHAIN 12 A DC 2 0.066 SIDE CHAIN 12 A DA 3 0.058 SIDE CHAIN 12 A DG 9 0.094 SIDE CHAIN 12 B DC 2 0.064 SIDE CHAIN 12 B DA 3 0.053 SIDE CHAIN 12 B DG 9 0.069 SIDE CHAIN 13 A DC 2 0.066 SIDE CHAIN 13 A DA 3 0.058 SIDE CHAIN 13 A DG 9 0.090 SIDE CHAIN 13 B DG 9 0.069 SIDE CHAIN 14 A DC 2 0.066 SIDE CHAIN 14 A DA 3 0.058 SIDE CHAIN 14 A DG 9 0.071 SIDE CHAIN 14 B DC 2 0.067 SIDE CHAIN 14 B DA 3 0.056 SIDE CHAIN 14 B DG 9 0.069 SIDE CHAIN 15 A DC 2 0.067 SIDE CHAIN 15 A DA 3 0.060 SIDE CHAIN 15 A DG 9 0.073 SIDE CHAIN 15 A DG 10 0.055 SIDE CHAIN 15 B DG 9 0.070 SIDE CHAIN 16 A DC 2 0.066 SIDE CHAIN 16 A DA 3 0.059 SIDE CHAIN 16 A DG 9 0.071 SIDE CHAIN 16 B DC 2 0.065 SIDE CHAIN 16 B DA 3 0.054 SIDE CHAIN 16 B DG 9 0.068 SIDE CHAIN 17 A DC 2 0.065 SIDE CHAIN 17 A DA 3 0.057 SIDE CHAIN 17 A DG 9 0.070 SIDE CHAIN 17 B DC 2 0.065 SIDE CHAIN 17 B DA 3 0.053 SIDE CHAIN 17 B DG 9 0.068 SIDE CHAIN 18 A DC 2 0.067 SIDE CHAIN 18 A DA 3 0.059 SIDE CHAIN 18 A DG 9 0.071 SIDE CHAIN 18 B DC 2 0.066 SIDE CHAIN 18 B DA 3 0.054 SIDE CHAIN 18 B DG 9 0.070 SIDE CHAIN 19 A DC 2 0.066 SIDE CHAIN 19 A DA 3 0.058 SIDE CHAIN 19 A DG 9 0.071 SIDE CHAIN 19 B DC 2 0.065 SIDE CHAIN 19 B DA 3 0.053 SIDE CHAIN 19 B DG 9 0.069 SIDE CHAIN 20 A DC 2 0.066 SIDE CHAIN 20 A DA 3 0.058 SIDE CHAIN 20 A DG 9 0.069 SIDE CHAIN 20 B DC 2 0.064 SIDE CHAIN 20 B DA 3 0.053 SIDE CHAIN 20 B DG 9 0.067 SIDE CHAIN 1 4.42 0.30 108.30 112.72 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 2.33 0.30 108.30 110.63 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 -3.88 0.60 122.90 119.02 A A A C6 C5 C7 DT DT DT 4 4 4 N 1 3.93 0.60 106.00 109.93 A A A O4' C4' C3' DC DC DC 6 6 6 N 1 2.07 0.30 108.30 110.37 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 2.38 0.30 108.30 110.68 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 4.98 0.30 108.30 113.28 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 4.19 0.30 108.30 112.49 B B B O4' C1' N1 DC DC DC 1 1 1 N 1 1.86 0.30 108.30 110.16 B B B O4' C1' N1 DT DT DT 4 4 4 N 1 -3.91 0.60 122.90 118.99 B B B C6 C5 C7 DT DT DT 4 4 4 N 1 3.87 0.60 106.00 109.87 B B B O4' C4' C3' DC DC DC 6 6 6 N 1 2.02 0.30 108.30 110.32 B B B O4' C1' N1 DT DT DT 8 8 8 N 1 2.28 0.30 108.30 110.58 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 4.98 0.30 108.30 113.28 B B B O4' C1' N9 DG DG DG 10 10 10 N 2 4.26 0.30 108.30 112.56 A A A O4' C1' N1 DC DC DC 1 1 1 N 2 2.29 0.30 108.30 110.59 A A A O4' C1' N1 DT DT DT 4 4 4 N 2 -3.86 0.60 122.90 119.04 A A A C6 C5 C7 DT DT DT 4 4 4 N 2 3.78 0.60 106.00 109.78 A A A O4' C4' C3' DC DC DC 6 6 6 N 2 2.13 0.30 108.30 110.43 A A A O4' C1' N1 DT DT DT 8 8 8 N 2 2.32 0.30 108.30 110.62 A A A O4' C1' N9 DG DG DG 9 9 9 N 2 4.83 0.30 108.30 113.13 A A A O4' C1' N9 DG DG DG 10 10 10 N 2 4.38 0.30 108.30 112.68 B B B O4' C1' N1 DC DC DC 1 1 1 N 2 2.01 0.30 108.30 110.31 B B B O4' C1' N1 DT DT DT 4 4 4 N 2 -3.87 0.60 122.90 119.03 B B B C6 C5 C7 DT DT DT 4 4 4 N 2 3.87 0.60 106.00 109.87 B B B O4' C4' C3' DC DC DC 6 6 6 N 2 2.01 0.30 108.30 110.31 B B B O4' C1' N1 DT DT DT 8 8 8 N 2 2.27 0.30 108.30 110.57 B B B O4' C1' N9 DG DG DG 9 9 9 N 2 5.02 0.30 108.30 113.32 B B B O4' C1' N9 DG DG DG 10 10 10 N 3 4.36 0.30 108.30 112.66 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 2.32 0.30 108.30 110.62 A A A O4' C1' N1 DT DT DT 4 4 4 N 3 -3.80 0.60 122.90 119.10 A A A C6 C5 C7 DT DT DT 4 4 4 N 3 3.88 0.60 106.00 109.88 A A A O4' C4' C3' DC DC DC 6 6 6 N 3 2.06 0.30 108.30 110.36 A A A O4' C1' N1 DT DT DT 8 8 8 N 3 2.37 0.30 108.30 110.67 A A A O4' C1' N9 DG DG DG 9 9 9 N 3 5.03 0.30 108.30 113.33 A A A O4' C1' N9 DG DG DG 10 10 10 N 3 4.20 0.30 108.30 112.50 B B B O4' C1' N1 DC DC DC 1 1 1 N 3 1.80 0.30 108.30 110.10 B B B O4' C1' N1 DT DT DT 4 4 4 N 3 -3.84 0.60 122.90 119.06 B B B C6 C5 C7 DT DT DT 4 4 4 N 3 3.82 0.60 106.00 109.82 B B B O4' C4' C3' DC DC DC 6 6 6 N 3 2.02 0.30 108.30 110.32 B B B O4' C1' N1 DT DT DT 8 8 8 N 3 2.33 0.30 108.30 110.63 B B B O4' C1' N9 DG DG DG 9 9 9 N 3 4.94 0.30 108.30 113.24 B B B O4' C1' N9 DG DG DG 10 10 10 N 4 4.12 0.30 108.30 112.42 A A A O4' C1' N1 DC DC DC 1 1 1 N 4 -3.90 0.60 122.90 119.00 A A A C6 C5 C7 DT DT DT 4 4 4 N 4 3.91 0.60 106.00 109.91 A A A O4' C4' C3' DC DC DC 6 6 6 N 4 2.03 0.30 108.30 110.33 A A A O4' C1' N1 DT DT DT 8 8 8 N 4 2.37 0.30 108.30 110.67 A A A O4' C1' N9 DG DG DG 9 9 9 N 4 4.90 0.30 108.30 113.20 A A A O4' C1' N9 DG DG DG 10 10 10 N 4 4.35 0.30 108.30 112.65 B B B O4' C1' N1 DC DC DC 1 1 1 N 4 1.86 0.30 108.30 110.16 B B B O4' C1' N1 DT DT DT 4 4 4 N 4 -3.90 0.60 122.90 119.00 B B B C6 C5 C7 DT DT DT 4 4 4 N 4 3.96 0.60 106.00 109.96 B B B O4' C4' C3' DC DC DC 6 6 6 N 4 2.18 0.30 108.30 110.48 B B B O4' C1' N1 DT DT DT 8 8 8 N 4 2.27 0.30 108.30 110.57 B B B O4' C1' N9 DG DG DG 9 9 9 N 4 4.84 0.30 108.30 113.14 B B B O4' C1' N9 DG DG DG 10 10 10 N 5 4.22 0.30 108.30 112.52 A A A O4' C1' N1 DC DC DC 1 1 1 N 5 2.12 0.30 108.30 110.42 A A A O4' C1' N1 DT DT DT 4 4 4 N 5 -3.79 0.60 122.90 119.11 A A A C6 C5 C7 DT DT DT 4 4 4 N 5 3.87 0.60 106.00 109.87 A A A O4' C4' C3' DC DC DC 6 6 6 N 5 2.09 0.30 108.30 110.39 A A A O4' C1' N1 DT DT DT 8 8 8 N 5 2.42 0.30 108.30 110.72 A A A O4' C1' N9 DG DG DG 9 9 9 N 5 4.88 0.30 108.30 113.18 A A A O4' C1' N9 DG DG DG 10 10 10 N 5 4.21 0.30 108.30 112.51 B B B O4' C1' N1 DC DC DC 1 1 1 N 5 -3.87 0.60 122.90 119.03 B B B C6 C5 C7 DT DT DT 4 4 4 N 5 3.86 0.60 106.00 109.86 B B B O4' C4' C3' DC DC DC 6 6 6 N 5 2.06 0.30 108.30 110.36 B B B O4' C1' N1 DT DT DT 8 8 8 N 5 2.39 0.30 108.30 110.69 B B B O4' C1' N9 DG DG DG 9 9 9 N 5 4.90 0.30 108.30 113.20 B B B O4' C1' N9 DG DG DG 10 10 10 N 6 4.20 0.30 108.30 112.50 A A A O4' C1' N1 DC DC DC 1 1 1 N 6 2.28 0.30 108.30 110.58 A A A O4' C1' N1 DT DT DT 4 4 4 N 6 -3.79 0.60 122.90 119.11 A A A C6 C5 C7 DT DT DT 4 4 4 N 6 3.91 0.60 106.00 109.91 A A A O4' C4' C3' DC DC DC 6 6 6 N 6 2.00 0.30 108.30 110.30 A A A O4' C1' N1 DT DT DT 8 8 8 N 6 2.37 0.30 108.30 110.67 A A A O4' C1' N9 DG DG DG 9 9 9 N 6 4.89 0.30 108.30 113.19 A A A O4' C1' N9 DG DG DG 10 10 10 N 6 4.39 0.30 108.30 112.69 B B B O4' C1' N1 DC DC DC 1 1 1 N 6 1.89 0.30 108.30 110.19 B B B O4' C1' N1 DT DT DT 4 4 4 N 6 -3.90 0.60 122.90 119.00 B B B C6 C5 C7 DT DT DT 4 4 4 N 6 3.84 0.60 106.00 109.84 B B B O4' C4' C3' DC DC DC 6 6 6 N 6 2.04 0.30 108.30 110.34 B B B O4' C1' N1 DT DT DT 8 8 8 N 6 2.30 0.30 108.30 110.60 B B B O4' C1' N9 DG DG DG 9 9 9 N 6 4.91 0.30 108.30 113.21 B B B O4' C1' N9 DG DG DG 10 10 10 N 7 4.24 0.30 108.30 112.54 A A A O4' C1' N1 DC DC DC 1 1 1 N 7 2.16 0.30 108.30 110.46 A A A O4' C1' N1 DT DT DT 4 4 4 N 7 -3.77 0.60 122.90 119.13 A A A C6 C5 C7 DT DT DT 4 4 4 N 7 3.97 0.60 106.00 109.97 A A A O4' C4' C3' DC DC DC 6 6 6 N 7 2.26 0.30 108.30 110.56 A A A O4' C1' N1 DT DT DT 8 8 8 N 7 2.10 0.30 108.30 110.40 A A A O4' C1' N9 DG DG DG 9 9 9 N 7 3.55 0.30 108.30 111.85 A A A O4' C1' N9 DG DG DG 10 10 10 N 7 4.06 0.30 108.30 112.36 B B B O4' C1' N1 DC DC DC 1 1 1 N 7 -3.84 0.60 122.90 119.06 B B B C6 C5 C7 DT DT DT 4 4 4 N 7 3.84 0.60 106.00 109.84 B B B O4' C4' C3' DC DC DC 6 6 6 N 7 2.03 0.30 108.30 110.33 B B B O4' C1' N1 DT DT DT 8 8 8 N 7 2.34 0.30 108.30 110.64 B B B O4' C1' N9 DG DG DG 9 9 9 N 7 4.91 0.30 108.30 113.21 B B B O4' C1' N9 DG DG DG 10 10 10 N 8 4.17 0.30 108.30 112.47 A A A O4' C1' N1 DC DC DC 1 1 1 N 8 2.33 0.30 108.30 110.63 A A A O4' C1' N1 DT DT DT 4 4 4 N 8 -3.78 0.60 122.90 119.12 A A A C6 C5 C7 DT DT DT 4 4 4 N 8 3.86 0.60 106.00 109.86 A A A O4' C4' C3' DC DC DC 6 6 6 N 8 2.00 0.30 108.30 110.30 A A A O4' C1' N1 DT DT DT 8 8 8 N 8 2.32 0.30 108.30 110.62 A A A O4' C1' N9 DG DG DG 9 9 9 N 8 4.88 0.30 108.30 113.18 A A A O4' C1' N9 DG DG DG 10 10 10 N 8 4.17 0.30 108.30 112.47 B B B O4' C1' N1 DC DC DC 1 1 1 N 8 1.85 0.30 108.30 110.15 B B B O4' C1' N1 DT DT DT 4 4 4 N 8 -3.92 0.60 122.90 118.98 B B B C6 C5 C7 DT DT DT 4 4 4 N 8 3.85 0.60 106.00 109.85 B B B O4' C4' C3' DC DC DC 6 6 6 N 8 2.09 0.30 108.30 110.39 B B B O4' C1' N1 DT DT DT 8 8 8 N 8 2.30 0.30 108.30 110.60 B B B O4' C1' N9 DG DG DG 9 9 9 N 8 4.90 0.30 108.30 113.20 B B B O4' C1' N9 DG DG DG 10 10 10 N 9 4.32 0.30 108.30 112.62 A A A O4' C1' N1 DC DC DC 1 1 1 N 9 2.35 0.30 108.30 110.65 A A A O4' C1' N1 DT DT DT 4 4 4 N 9 -3.78 0.60 122.90 119.12 A A A C6 C5 C7 DT DT DT 4 4 4 N 9 3.87 0.60 106.00 109.87 A A A O4' C4' C3' DC DC DC 6 6 6 N 9 2.11 0.30 108.30 110.41 A A A O4' C1' N1 DT DT DT 8 8 8 N 9 2.14 0.30 108.30 110.44 A A A O4' C1' N9 DG DG DG 9 9 9 N 9 4.98 0.30 108.30 113.28 A A A O4' C1' N9 DG DG DG 10 10 10 N 9 6.72 0.30 108.30 115.02 B B B O4' C1' N1 DC DC DC 1 1 1 N 9 1.87 0.30 108.30 110.17 B B B O4' C1' N1 DT DT DT 4 4 4 N 9 -3.89 0.60 122.90 119.01 B B B C6 C5 C7 DT DT DT 4 4 4 N 9 3.82 0.60 106.00 109.82 B B B O4' C4' C3' DC DC DC 6 6 6 N 9 2.02 0.30 108.30 110.32 B B B O4' C1' N1 DT DT DT 8 8 8 N 9 2.28 0.30 108.30 110.58 B B B O4' C1' N9 DG DG DG 9 9 9 N 9 5.01 0.30 108.30 113.31 B B B O4' C1' N9 DG DG DG 10 10 10 N 10 4.28 0.30 108.30 112.58 A A A O4' C1' N1 DC DC DC 1 1 1 N 10 2.19 0.30 108.30 110.49 A A A O4' C1' N1 DT DT DT 4 4 4 N 10 -3.79 0.60 122.90 119.11 A A A C6 C5 C7 DT DT DT 4 4 4 N 10 3.85 0.60 106.00 109.85 A A A O4' C4' C3' DC DC DC 6 6 6 N 10 2.00 0.30 108.30 110.30 A A A O4' C1' N1 DT DT DT 8 8 8 N 10 2.53 0.30 108.30 110.83 A A A O4' C1' N9 DG DG DG 9 9 9 N 10 5.06 0.30 108.30 113.36 A A A O4' C1' N9 DG DG DG 10 10 10 N 10 5.41 0.30 108.30 113.71 B B B O4' C1' N1 DC DC DC 1 1 1 N 10 -6.04 1.00 110.10 104.06 B B B C1' O4' C4' DC DC DC 2 2 2 N 10 1.84 0.30 108.30 110.14 B B B O4' C1' N1 DT DT DT 4 4 4 N 10 -3.79 0.60 122.90 119.11 B B B C6 C5 C7 DT DT DT 4 4 4 N 10 3.88 0.60 106.00 109.88 B B B O4' C4' C3' DC DC DC 6 6 6 N 10 2.08 0.30 108.30 110.38 B B B O4' C1' N1 DT DT DT 8 8 8 N 10 2.34 0.30 108.30 110.64 B B B O4' C1' N9 DG DG DG 9 9 9 N 10 4.91 0.30 108.30 113.21 B B B O4' C1' N9 DG DG DG 10 10 10 N 11 4.37 0.30 108.30 112.67 A A A O4' C1' N1 DC DC DC 1 1 1 N 11 2.12 0.30 108.30 110.42 A A A O4' C1' N1 DT DT DT 4 4 4 N 11 -3.83 0.60 122.90 119.07 A A A C6 C5 C7 DT DT DT 4 4 4 N 11 3.93 0.60 106.00 109.93 A A A O4' C4' C3' DC DC DC 6 6 6 N 11 2.08 0.30 108.30 110.38 A A A O4' C1' N1 DT DT DT 8 8 8 N 11 2.22 0.30 108.30 110.52 A A A O4' C1' N9 DG DG DG 9 9 9 N 11 5.02 0.30 108.30 113.32 A A A O4' C1' N9 DG DG DG 10 10 10 N 11 6.77 0.30 108.30 115.07 B B B O4' C1' N1 DC DC DC 1 1 1 N 11 -3.91 0.60 122.90 118.99 B B B C6 C5 C7 DT DT DT 4 4 4 N 11 3.90 0.60 106.00 109.90 B B B O4' C4' C3' DC DC DC 6 6 6 N 11 2.07 0.30 108.30 110.37 B B B O4' C1' N1 DT DT DT 8 8 8 N 11 2.42 0.30 108.30 110.72 B B B O4' C1' N9 DG DG DG 9 9 9 N 11 4.87 0.30 108.30 113.17 B B B O4' C1' N9 DG DG DG 10 10 10 N 12 4.21 0.30 108.30 112.51 A A A O4' C1' N1 DC DC DC 1 1 1 N 12 2.30 0.30 108.30 110.60 A A A O4' C1' N1 DT DT DT 4 4 4 N 12 -3.83 0.60 122.90 119.07 A A A C6 C5 C7 DT DT DT 4 4 4 N 12 3.73 0.60 106.00 109.73 A A A O4' C4' C3' DC DC DC 6 6 6 N 12 1.83 0.30 108.30 110.13 A A A O4' C1' N1 DT DT DT 8 8 8 N 12 2.43 0.30 108.30 110.73 A A A O4' C1' N9 DG DG DG 9 9 9 N 12 4.99 0.30 108.30 113.29 A A A O4' C1' N9 DG DG DG 10 10 10 N 12 3.92 0.30 108.30 112.22 B B B O4' C1' N1 DC DC DC 1 1 1 N 12 1.96 0.30 108.30 110.26 B B B O4' C1' N1 DT DT DT 4 4 4 N 12 -3.79 0.60 122.90 119.11 B B B C6 C5 C7 DT DT DT 4 4 4 N 12 3.87 0.60 106.00 109.87 B B B O4' C4' C3' DC DC DC 6 6 6 N 12 2.07 0.30 108.30 110.37 B B B O4' C1' N1 DT DT DT 8 8 8 N 12 2.32 0.30 108.30 110.62 B B B O4' C1' N9 DG DG DG 9 9 9 N 12 4.96 0.30 108.30 113.26 B B B O4' C1' N9 DG DG DG 10 10 10 N 13 4.16 0.30 108.30 112.46 A A A O4' C1' N1 DC DC DC 1 1 1 N 13 2.36 0.30 108.30 110.66 A A A O4' C1' N1 DT DT DT 4 4 4 N 13 -3.84 0.60 122.90 119.06 A A A C6 C5 C7 DT DT DT 4 4 4 N 13 3.87 0.60 106.00 109.87 A A A O4' C4' C3' DC DC DC 6 6 6 N 13 2.07 0.30 108.30 110.37 A A A O4' C1' N1 DT DT DT 8 8 8 N 13 2.54 0.30 108.30 110.84 A A A O4' C1' N9 DG DG DG 9 9 9 N 13 3.05 0.50 106.80 109.85 A A A O4' C1' C2' DG DG DG 10 10 10 N 13 6.81 0.30 108.30 115.11 A A A O4' C1' N9 DG DG DG 10 10 10 N 13 4.10 0.30 108.30 112.40 B B B O4' C1' N1 DC DC DC 1 1 1 N 13 1.91 0.30 108.30 110.21 B B B O4' C1' N1 DT DT DT 4 4 4 N 13 -3.95 0.60 122.90 118.95 B B B C6 C5 C7 DT DT DT 4 4 4 N 13 3.87 0.60 106.00 109.87 B B B O4' C4' C3' DC DC DC 6 6 6 N 13 2.02 0.30 108.30 110.32 B B B O4' C1' N1 DT DT DT 8 8 8 N 13 2.32 0.30 108.30 110.62 B B B O4' C1' N9 DG DG DG 9 9 9 N 13 4.93 0.30 108.30 113.23 B B B O4' C1' N9 DG DG DG 10 10 10 N 14 4.19 0.30 108.30 112.49 A A A O4' C1' N1 DC DC DC 1 1 1 N 14 2.32 0.30 108.30 110.62 A A A O4' C1' N1 DT DT DT 4 4 4 N 14 -3.84 0.60 122.90 119.06 A A A C6 C5 C7 DT DT DT 4 4 4 N 14 7.27 1.20 119.70 126.97 A A A C3' O3' P DC DC DG 6 6 7 Y 14 1.92 0.30 108.30 110.22 A A A O4' C1' N1 DT DT DT 8 8 8 N 14 2.38 0.30 108.30 110.68 A A A O4' C1' N9 DG DG DG 9 9 9 N 14 4.88 0.30 108.30 113.18 A A A O4' C1' N9 DG DG DG 10 10 10 N 14 4.17 0.30 108.30 112.47 B B B O4' C1' N1 DC DC DC 1 1 1 N 14 1.91 0.30 108.30 110.21 B B B O4' C1' N1 DT DT DT 4 4 4 N 14 -3.88 0.60 122.90 119.02 B B B C6 C5 C7 DT DT DT 4 4 4 N 14 3.76 0.60 106.00 109.76 B B B O4' C4' C3' DC DC DC 6 6 6 N 14 2.04 0.30 108.30 110.34 B B B O4' C1' N1 DT DT DT 8 8 8 N 14 2.32 0.30 108.30 110.62 B B B O4' C1' N9 DG DG DG 9 9 9 N 14 4.92 0.30 108.30 113.22 B B B O4' C1' N9 DG DG DG 10 10 10 N 15 4.34 0.30 108.30 112.64 A A A O4' C1' N1 DC DC DC 1 1 1 N 15 2.42 0.30 108.30 110.72 A A A O4' C1' N1 DT DT DT 4 4 4 N 15 -3.80 0.60 122.90 119.10 A A A C6 C5 C7 DT DT DT 4 4 4 N 15 3.99 0.60 106.00 109.99 A A A O4' C4' C3' DC DC DC 6 6 6 N 15 2.17 0.30 108.30 110.47 A A A O4' C1' N1 DT DT DT 8 8 8 N 15 2.21 0.30 108.30 110.51 A A A O4' C1' N9 DG DG DG 9 9 9 N 15 4.79 0.30 108.30 113.09 A A A O4' C1' N9 DG DG DG 10 10 10 N 15 4.14 0.30 108.30 112.44 B B B O4' C1' N1 DC DC DC 1 1 1 N 15 -3.90 0.60 122.90 119.00 B B B C6 C5 C7 DT DT DT 4 4 4 N 15 3.88 0.60 106.00 109.88 B B B O4' C4' C3' DC DC DC 6 6 6 N 15 2.03 0.30 108.30 110.33 B B B O4' C1' N1 DT DT DT 8 8 8 N 15 2.34 0.30 108.30 110.64 B B B O4' C1' N9 DG DG DG 9 9 9 N 15 4.90 0.30 108.30 113.20 B B B O4' C1' N9 DG DG DG 10 10 10 N 16 4.18 0.30 108.30 112.48 A A A O4' C1' N1 DC DC DC 1 1 1 N 16 2.30 0.30 108.30 110.60 A A A O4' C1' N1 DT DT DT 4 4 4 N 16 -3.80 0.60 122.90 119.10 A A A C6 C5 C7 DT DT DT 4 4 4 N 16 3.87 0.60 106.00 109.87 A A A O4' C4' C3' DC DC DC 6 6 6 N 16 2.07 0.30 108.30 110.37 A A A O4' C1' N1 DT DT DT 8 8 8 N 16 2.31 0.30 108.30 110.61 A A A O4' C1' N9 DG DG DG 9 9 9 N 16 5.02 0.30 108.30 113.32 A A A O4' C1' N9 DG DG DG 10 10 10 N 16 4.17 0.30 108.30 112.47 B B B O4' C1' N1 DC DC DC 1 1 1 N 16 1.87 0.30 108.30 110.17 B B B O4' C1' N1 DT DT DT 4 4 4 N 16 -3.89 0.60 122.90 119.01 B B B C6 C5 C7 DT DT DT 4 4 4 N 16 3.92 0.60 106.00 109.92 B B B O4' C4' C3' DC DC DC 6 6 6 N 16 2.03 0.30 108.30 110.33 B B B O4' C1' N1 DT DT DT 8 8 8 N 16 2.42 0.30 108.30 110.72 B B B O4' C1' N9 DG DG DG 9 9 9 N 16 4.93 0.30 108.30 113.23 B B B O4' C1' N9 DG DG DG 10 10 10 N 17 4.41 0.30 108.30 112.71 A A A O4' C1' N1 DC DC DC 1 1 1 N 17 2.25 0.30 108.30 110.55 A A A O4' C1' N1 DT DT DT 4 4 4 N 17 -3.85 0.60 122.90 119.05 A A A C6 C5 C7 DT DT DT 4 4 4 N 17 3.92 0.60 106.00 109.92 A A A O4' C4' C3' DC DC DC 6 6 6 N 17 2.01 0.30 108.30 110.31 A A A O4' C1' N1 DT DT DT 8 8 8 N 17 2.37 0.30 108.30 110.67 A A A O4' C1' N9 DG DG DG 9 9 9 N 17 4.89 0.30 108.30 113.19 A A A O4' C1' N9 DG DG DG 10 10 10 N 17 4.20 0.30 108.30 112.50 B B B O4' C1' N1 DC DC DC 1 1 1 N 17 -3.91 0.60 122.90 118.99 B B B C6 C5 C7 DT DT DT 4 4 4 N 17 3.90 0.60 106.00 109.90 B B B O4' C4' C3' DC DC DC 6 6 6 N 17 2.06 0.30 108.30 110.36 B B B O4' C1' N1 DT DT DT 8 8 8 N 17 2.34 0.30 108.30 110.64 B B B O4' C1' N9 DG DG DG 9 9 9 N 17 4.93 0.30 108.30 113.23 B B B O4' C1' N9 DG DG DG 10 10 10 N 18 4.35 0.30 108.30 112.65 A A A O4' C1' N1 DC DC DC 1 1 1 N 18 2.43 0.30 108.30 110.73 A A A O4' C1' N1 DT DT DT 4 4 4 N 18 -3.86 0.60 122.90 119.04 A A A C6 C5 C7 DT DT DT 4 4 4 N 18 3.87 0.60 106.00 109.87 A A A O4' C4' C3' DC DC DC 6 6 6 N 18 2.07 0.30 108.30 110.37 A A A O4' C1' N1 DT DT DT 8 8 8 N 18 2.33 0.30 108.30 110.63 A A A O4' C1' N9 DG DG DG 9 9 9 N 18 4.81 0.30 108.30 113.11 A A A O4' C1' N9 DG DG DG 10 10 10 N 18 4.21 0.30 108.30 112.51 B B B O4' C1' N1 DC DC DC 1 1 1 N 18 1.98 0.30 108.30 110.28 B B B O4' C1' N1 DT DT DT 4 4 4 N 18 -3.80 0.60 122.90 119.10 B B B C6 C5 C7 DT DT DT 4 4 4 N 18 3.80 0.60 106.00 109.80 B B B O4' C4' C3' DC DC DC 6 6 6 N 18 2.04 0.30 108.30 110.34 B B B O4' C1' N1 DT DT DT 8 8 8 N 18 2.24 0.30 108.30 110.54 B B B O4' C1' N9 DG DG DG 9 9 9 N 18 4.89 0.30 108.30 113.19 B B B O4' C1' N9 DG DG DG 10 10 10 N 19 4.39 0.30 108.30 112.69 A A A O4' C1' N1 DC DC DC 1 1 1 N 19 2.38 0.30 108.30 110.68 A A A O4' C1' N1 DT DT DT 4 4 4 N 19 -3.86 0.60 122.90 119.04 A A A C6 C5 C7 DT DT DT 4 4 4 N 19 3.88 0.60 106.00 109.88 A A A O4' C4' C3' DC DC DC 6 6 6 N 19 2.03 0.30 108.30 110.33 A A A O4' C1' N1 DT DT DT 8 8 8 N 19 2.32 0.30 108.30 110.62 A A A O4' C1' N9 DG DG DG 9 9 9 N 19 4.97 0.30 108.30 113.27 A A A O4' C1' N9 DG DG DG 10 10 10 N 19 4.17 0.30 108.30 112.47 B B B O4' C1' N1 DC DC DC 1 1 1 N 19 1.91 0.30 108.30 110.21 B B B O4' C1' N1 DT DT DT 4 4 4 N 19 -3.86 0.60 122.90 119.04 B B B C6 C5 C7 DT DT DT 4 4 4 N 19 3.84 0.60 106.00 109.84 B B B O4' C4' C3' DC DC DC 6 6 6 N 19 1.99 0.30 108.30 110.29 B B B O4' C1' N1 DT DT DT 8 8 8 N 19 2.27 0.30 108.30 110.57 B B B O4' C1' N9 DG DG DG 9 9 9 N 19 4.96 0.30 108.30 113.26 B B B O4' C1' N9 DG DG DG 10 10 10 N 20 4.18 0.30 108.30 112.48 A A A O4' C1' N1 DC DC DC 1 1 1 N 20 2.24 0.30 108.30 110.54 A A A O4' C1' N1 DT DT DT 4 4 4 N 20 -3.86 0.60 122.90 119.04 A A A C6 C5 C7 DT DT DT 4 4 4 N 20 3.91 0.60 106.00 109.91 A A A O4' C4' C3' DC DC DC 6 6 6 N 20 2.00 0.30 108.30 110.30 A A A O4' C1' N1 DT DT DT 8 8 8 N 20 2.37 0.30 108.30 110.67 A A A O4' C1' N9 DG DG DG 9 9 9 N 20 4.95 0.30 108.30 113.25 A A A O4' C1' N9 DG DG DG 10 10 10 N 20 4.20 0.30 108.30 112.50 B B B O4' C1' N1 DC DC DC 1 1 1 N 20 1.80 0.30 108.30 110.10 B B B O4' C1' N1 DT DT DT 4 4 4 N 20 -3.93 0.60 122.90 118.97 B B B C6 C5 C7 DT DT DT 4 4 4 N 20 3.86 0.60 106.00 109.86 B B B O4' C4' C3' DC DC DC 6 6 6 N 20 2.00 0.30 108.30 110.30 B B B O4' C1' N1 DT DT DT 8 8 8 N 20 2.34 0.30 108.30 110.64 B B B O4' C1' N9 DG DG DG 9 9 9 N 20 5.00 0.30 108.30 113.30 B B B O4' C1' N9 DG DG DG 10 10 10 N NMR Solution Structure of d(CCATGCGTGG)2, G-T mismatch structure 1 N N 1 N N hydrog DC-DG PAIR A DC 1 A N4 DC 1 1_555 B DG 9 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 10 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 10 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 10 B N2 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 9 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 9 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 9 B N2 DG 9 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 8 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 8 B O4 DT 8 1_555 hydrog DT-DC MISPAIR A DT 4 A O4 DT 4 1_555 B DC 6 B N4 DC 6 1_555 hydrog TYPE_28_PAIR A DT 4 A N3 DT 4 1_555 B DG 7 B O6 DG 7 1_555 hydrog TYPE_28_PAIR A DT 4 A O2 DT 4 1_555 B DG 7 B N1 DG 7 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 6 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 6 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 6 B N4 DC 6 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 5 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 5 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 5 B N2 DG 5 1_555 hydrog TYPE_28_PAIR A DG 7 A N1 DG 7 1_555 B DT 4 B O2 DT 4 1_555 hydrog TYPE_28_PAIR A DG 7 A O6 DG 7 1_555 B DT 4 B N3 DT 4 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 3 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 3 B N6 DA 3 1_555 hydrog DG-DC PAIR A DG 9 A O6 DG 9 1_555 B DC 1 B N4 DC 1 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 2 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 2 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 2 B N4 DC 2 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 1 B N4 DC 1 1_555 DNA g-t mismatch, dynamics, spin relaxation, order parameter, helical parameter, sequence dependent structure, sequence dependent dynamics, DNA 1KKW PDB 1 1KKW 1 10 1KKW 1 10 1KKW A 1 1 10 1 10 1KKW 1 10 1KKW B 1 1 10