0.022346 0.000000 0.006738 0.000000 0.016540 0.000000 0.000000 0.000000 0.023697 0.000000 0.000000 0.000000 Martin, T.W. Dauter, Z. Devedjiev, Y. Sheffield, P. Jelen, F. He, M. Sherman, D. Otlewski, J. Derewenda, Z.S. Derewenda, U. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 106.78 90.00 44.751 60.458 44.077 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C14 H16 N4 O5 320.301 1,2-CIS-1-HYDROXY-2,7-DIAMINO-MITOSENE CARBAMIC ACID 2,6-DIAMINO-1-HYDROXY-5-METHYL-4,7-DIOXO-2,3,4,7-TETRAHYDRO-1H-3A-AZA-CYCLOPENTA[A]INDEN-8-YLMETHYL ESTER non-polymer C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 10 933 942 10.1016/S0969-2126(02)00778-5 12121648 Molecular basis of mitomycin C resistance in streptomyces: structure and function of the MRD protein. 2002 10.2210/pdb1kll/pdb pdb_00001kll 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100.0 1 mirrors CCD 2000-05-15 ADSC QUANTUM 4 Si 111 SINGLE WAVELENGTH M x-ray 1 0.9700 1.0 X9B NSLS 0.9700 0.9700 SYNCHROTRON NSLS BEAMLINE X9B complexed with 2,7-DIAMINOMITOSENE, residue MC 14571.889 mitomycin-binding protein L19M, L25M 1 man polymer 320.301 1,2-CIS-1-HYDROXY-2,7-DIAMINO-MITOSENE 1 syn non-polymer 18.015 water 153 nat water Mrd; Mitomycin resistance protein D no yes MSARISLFAVVVED(MSE)AKS(MSE)EFYRK(MSE)GVEIPAEADSAPHTEAVLDGGIRLAWDTVETVRSYDPEWQAPT GGHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDLFAPLP MSARISLFAVVVEDMAKSMEFYRKMGVEIPAEADSAPHTEAVLDGGIRLAWDTVETVRSYDPEWQAPTGGHRFAIAFEFP DTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDLFAPLP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Streptomyces Escherichia sample 1914 Streptomyces lavendulae 562 Escherichia coli BL221(DE3) pHis Paralell I 1 1.96 37.21 VAPOR DIFFUSION, HANGING DROP 6.0 ammonium sulfate, MES buffer, beta-octylglucoside, pH 6.0, VAPOR DIFFUSION, HANGING DROP at 298K, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K 298.0 database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2002-07-19 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id the same uncomplexed protein RCSB Y RCSB 2001-12-12 REL REL MC 1,2-CIS-1-HYDROXY-2,7-DIAMINO-MITOSENE HOH water MC 9138 2 MC MC 9138 A HOH 1 3 HOH HOH 9139 A HOH 2 3 HOH HOH 9140 A HOH 3 3 HOH HOH 9141 A HOH 4 3 HOH HOH 9142 A HOH 5 3 HOH HOH 9143 A HOH 6 3 HOH HOH 9144 A HOH 7 3 HOH HOH 9145 A HOH 8 3 HOH HOH 9146 A HOH 9 3 HOH HOH 9147 A HOH 10 3 HOH HOH 9148 A HOH 11 3 HOH HOH 9149 A HOH 12 3 HOH HOH 9150 A HOH 13 3 HOH HOH 9151 A HOH 14 3 HOH HOH 9152 A HOH 15 3 HOH HOH 9153 A HOH 16 3 HOH HOH 9154 A HOH 17 3 HOH HOH 9155 A HOH 18 3 HOH HOH 9156 A HOH 19 3 HOH HOH 9157 A HOH 20 3 HOH HOH 9158 A HOH 21 3 HOH HOH 9159 A HOH 22 3 HOH HOH 9160 A HOH 23 3 HOH HOH 9161 A HOH 24 3 HOH HOH 9162 A HOH 25 3 HOH HOH 9163 A HOH 26 3 HOH HOH 9164 A HOH 27 3 HOH HOH 9165 A HOH 28 3 HOH HOH 9166 A HOH 29 3 HOH HOH 9167 A HOH 30 3 HOH HOH 9168 A HOH 31 3 HOH HOH 9169 A HOH 32 3 HOH HOH 9170 A HOH 33 3 HOH HOH 9171 A HOH 34 3 HOH HOH 9172 A HOH 35 3 HOH HOH 9173 A HOH 36 3 HOH HOH 9174 A HOH 37 3 HOH HOH 9175 A HOH 38 3 HOH HOH 9176 A HOH 39 3 HOH HOH 9177 A HOH 40 3 HOH HOH 9178 A HOH 41 3 HOH HOH 9179 A HOH 42 3 HOH HOH 9180 A HOH 43 3 HOH HOH 9181 A HOH 44 3 HOH HOH 9182 A HOH 45 3 HOH HOH 9183 A HOH 46 3 HOH HOH 9184 A HOH 47 3 HOH HOH 9185 A HOH 48 3 HOH HOH 9186 A HOH 49 3 HOH HOH 9187 A HOH 50 3 HOH HOH 9188 A HOH 51 3 HOH HOH 9189 A HOH 52 3 HOH HOH 9190 A HOH 53 3 HOH HOH 9191 A HOH 54 3 HOH HOH 9192 A HOH 55 3 HOH HOH 9193 A HOH 56 3 HOH HOH 9194 A HOH 57 3 HOH HOH 9195 A HOH 58 3 HOH HOH 9196 A HOH 59 3 HOH HOH 9197 A HOH 60 3 HOH HOH 9198 A HOH 61 3 HOH HOH 9199 A HOH 62 3 HOH HOH 9200 A HOH 63 3 HOH HOH 9201 A HOH 64 3 HOH HOH 9202 A HOH 65 3 HOH HOH 9203 A HOH 66 3 HOH HOH 9204 A HOH 67 3 HOH HOH 9205 A HOH 68 3 HOH HOH 9206 A HOH 69 3 HOH HOH 9207 A HOH 70 3 HOH HOH 9208 A HOH 71 3 HOH HOH 9209 A HOH 72 3 HOH HOH 9210 A HOH 73 3 HOH HOH 9211 A HOH 74 3 HOH HOH 9212 A HOH 75 3 HOH HOH 9213 A HOH 76 3 HOH HOH 9214 A HOH 77 3 HOH HOH 9215 A HOH 78 3 HOH HOH 9216 A HOH 79 3 HOH HOH 9217 A HOH 80 3 HOH HOH 9218 A HOH 81 3 HOH HOH 9219 A HOH 82 3 HOH HOH 9220 A HOH 83 3 HOH HOH 9221 A HOH 84 3 HOH HOH 9222 A HOH 85 3 HOH HOH 9223 A HOH 86 3 HOH HOH 9224 A HOH 87 3 HOH HOH 9225 A HOH 88 3 HOH HOH 9226 A HOH 89 3 HOH HOH 9227 A HOH 90 3 HOH HOH 9228 A HOH 91 3 HOH HOH 9229 A HOH 92 3 HOH HOH 9230 A HOH 93 3 HOH HOH 9231 A HOH 94 3 HOH HOH 9232 A HOH 95 3 HOH HOH 9233 A HOH 96 3 HOH HOH 9234 A HOH 97 3 HOH HOH 9235 A HOH 98 3 HOH HOH 9236 A HOH 99 3 HOH HOH 9237 A HOH 100 3 HOH HOH 9238 A HOH 101 3 HOH HOH 9239 A HOH 102 3 HOH HOH 9240 A HOH 103 3 HOH HOH 9241 A HOH 104 3 HOH HOH 9242 A HOH 105 3 HOH HOH 9243 A HOH 106 3 HOH HOH 9244 A HOH 107 3 HOH HOH 9245 A HOH 108 3 HOH HOH 9246 A HOH 109 3 HOH HOH 9247 A HOH 110 3 HOH HOH 9248 A HOH 111 3 HOH HOH 9249 A HOH 112 3 HOH HOH 9250 A HOH 113 3 HOH HOH 9251 A HOH 114 3 HOH HOH 9252 A HOH 115 3 HOH HOH 9253 A HOH 116 3 HOH HOH 9254 A HOH 117 3 HOH HOH 9255 A HOH 118 3 HOH HOH 9256 A HOH 119 3 HOH HOH 9257 A HOH 120 3 HOH HOH 9258 A HOH 121 3 HOH HOH 9259 A HOH 122 3 HOH HOH 9260 A HOH 123 3 HOH HOH 9261 A HOH 124 3 HOH HOH 9262 A HOH 125 3 HOH HOH 9263 A HOH 126 3 HOH HOH 9264 A HOH 127 3 HOH HOH 9265 A HOH 128 3 HOH HOH 9266 A HOH 129 3 HOH HOH 9267 A HOH 130 3 HOH HOH 9268 A HOH 131 3 HOH HOH 9269 A HOH 132 3 HOH HOH 9270 A HOH 133 3 HOH HOH 9271 A HOH 134 3 HOH HOH 9272 A HOH 135 3 HOH HOH 9273 A HOH 136 3 HOH HOH 9274 A HOH 137 3 HOH HOH 9275 A HOH 138 3 HOH HOH 9276 A HOH 139 3 HOH HOH 9277 A HOH 140 3 HOH HOH 9278 A HOH 141 3 HOH HOH 9279 A HOH 142 3 HOH HOH 9280 A HOH 143 3 HOH HOH 9281 A HOH 144 3 HOH HOH 9282 A HOH 145 3 HOH HOH 9283 A HOH 146 3 HOH HOH 9284 A HOH 147 3 HOH HOH 9285 A HOH 148 3 HOH HOH 9286 A HOH 149 3 HOH HOH 9287 A HOH 150 3 HOH HOH 9288 A HOH 151 3 HOH HOH 9289 A HOH 152 3 HOH HOH 9290 A HOH 153 3 HOH HOH 9291 A n 1 1 A n 2 2 A ALA 3 n 3 ALA 3 A ARG 4 n 4 ARG 4 A ILE 5 n 5 ILE 5 A SER 6 n 6 SER 6 A LEU 7 n 7 LEU 7 A PHE 8 n 8 PHE 8 A ALA 9 n 9 ALA 9 A VAL 10 n 10 VAL 10 A VAL 11 n 11 VAL 11 A VAL 12 n 12 VAL 12 A GLU 13 n 13 GLU 13 A ASP 14 n 14 ASP 14 A MSE 15 n 15 MSE 15 A ALA 16 n 16 ALA 16 A LYS 17 n 17 LYS 17 A SER 18 n 18 SER 18 A MSE 19 n 19 MSE 19 A GLU 20 n 20 GLU 20 A PHE 21 n 21 PHE 21 A TYR 22 n 22 TYR 22 A ARG 23 n 23 ARG 23 A LYS 24 n 24 LYS 24 A MSE 25 n 25 MSE 25 A GLY 26 n 26 GLY 26 A VAL 27 n 27 VAL 27 A GLU 28 n 28 GLU 28 A ILE 29 n 29 ILE 29 A PRO 30 n 30 PRO 30 A ALA 31 n 31 ALA 31 A GLU 32 n 32 GLU 32 A ALA 33 n 33 ALA 33 A ASP 34 n 34 ASP 34 A SER 35 n 35 SER 35 A ALA 36 n 36 ALA 36 A PRO 37 n 37 PRO 37 A HIS 38 n 38 HIS 38 A THR 39 n 39 THR 39 A GLU 40 n 40 GLU 40 A ALA 41 n 41 ALA 41 A VAL 42 n 42 VAL 42 A LEU 43 n 43 LEU 43 A ASP 44 n 44 ASP 44 A GLY 45 n 45 GLY 45 A GLY 46 n 46 GLY 46 A ILE 47 n 47 ILE 47 A ARG 48 n 48 ARG 48 A LEU 49 n 49 LEU 49 A ALA 50 n 50 ALA 50 A TRP 51 n 51 TRP 51 A ASP 52 n 52 ASP 52 A THR 53 n 53 THR 53 A VAL 54 n 54 VAL 54 A GLU 55 n 55 GLU 55 A THR 56 n 56 THR 56 A VAL 57 n 57 VAL 57 A ARG 58 n 58 ARG 58 A SER 59 n 59 SER 59 A TYR 60 n 60 TYR 60 A ASP 61 n 61 ASP 61 A PRO 62 n 62 PRO 62 A GLU 63 n 63 GLU 63 A TRP 64 n 64 TRP 64 A GLN 65 n 65 GLN 65 A ALA 66 n 66 ALA 66 A PRO 67 n 67 PRO 67 A THR 68 n 68 THR 68 A GLY 69 n 69 GLY 69 A GLY 70 n 70 GLY 70 A HIS 71 n 71 HIS 71 A ARG 72 n 72 ARG 72 A PHE 73 n 73 PHE 73 A ALA 74 n 74 ALA 74 A ILE 75 n 75 ILE 75 A ALA 76 n 76 ALA 76 A PHE 77 n 77 PHE 77 A GLU 78 n 78 GLU 78 A PHE 79 n 79 PHE 79 A PRO 80 n 80 PRO 80 A ASP 81 n 81 ASP 81 A THR 82 n 82 THR 82 A ALA 83 n 83 ALA 83 A SER 84 n 84 SER 84 A VAL 85 n 85 VAL 85 A ASP 86 n 86 ASP 86 A LYS 87 n 87 LYS 87 A LYS 88 n 88 LYS 88 A TYR 89 n 89 TYR 89 A ALA 90 n 90 ALA 90 A GLU 91 n 91 GLU 91 A LEU 92 n 92 LEU 92 A VAL 93 n 93 VAL 93 A ASP 94 n 94 ASP 94 A ALA 95 n 95 ALA 95 A GLY 96 n 96 GLY 96 A TYR 97 n 97 TYR 97 A GLU 98 n 98 GLU 98 A GLY 99 n 99 GLY 99 A HIS 100 n 100 HIS 100 A LEU 101 n 101 LEU 101 A LYS 102 n 102 LYS 102 A PRO 103 n 103 PRO 103 A TRP 104 n 104 TRP 104 A ASN 105 n 105 ASN 105 A ALA 106 n 106 ALA 106 A VAL 107 n 107 VAL 107 A TRP 108 n 108 TRP 108 A GLY 109 n 109 GLY 109 A GLN 110 n 110 GLN 110 A ARG 111 n 111 ARG 111 A TYR 112 n 112 TYR 112 A ALA 113 n 113 ALA 113 A ILE 114 n 114 ILE 114 A VAL 115 n 115 VAL 115 A LYS 116 n 116 LYS 116 A ASP 117 n 117 ASP 117 A PRO 118 n 118 PRO 118 A ASP 119 n 119 ASP 119 A GLY 120 n 120 GLY 120 A ASN 121 n 121 ASN 121 A VAL 122 n 122 VAL 122 A VAL 123 n 123 VAL 123 A ASP 124 n 124 ASP 124 A LEU 125 n 125 LEU 125 A PHE 126 n 126 PHE 126 A ALA 127 n 127 ALA 127 A PRO 128 n 128 PRO 128 A LEU 129 n 129 LEU 129 A PRO 130 n 130 PRO 130 A author_and_software_defined_assembly PISA 2 dimeric 5550 -24 11100 A MSE 15 SELENOMETHIONINE A MSE 15 MET A MSE 19 SELENOMETHIONINE A MSE 19 MET A MSE 25 SELENOMETHIONINE A MSE 25 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_556 -x,y,-z+1 crystal symmetry operation -12.7249246352 0.0000000000 42.2002159003 A N PHE 8 A N PHE 8 A O ALA 50 A O ALA 50 A O LEU 49 A O LEU 49 A N ALA 41 A N ALA 41 A N PHE 77 A N PHE 77 A O ASP 124 A O ASP 124 A O VAL 123 A O VAL 123 A N VAL 115 A N VAL 115 A O TYR 112 A O TYR 112 A N TRP 104 A N TRP 104 1 A CB ASP 44 A CB ASP 44 1 Y 1 A CG ASP 44 A CG ASP 44 1 Y 1 A OD1 ASP 44 A OD1 ASP 44 1 Y 1 A OD2 ASP 44 A OD2 ASP 44 1 Y 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 3.50 0.50 120.30 123.80 A A A NE CZ NH1 ARG ARG ARG 23 23 23 N 1 -3.67 0.50 120.30 116.63 A A A NE CZ NH2 ARG ARG ARG 23 23 23 N 1 3.21 0.50 120.30 123.51 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 1 -3.70 0.50 120.30 116.60 A A A NE CZ NH2 ARG ARG ARG 58 58 58 N 1 -3.85 0.50 120.30 116.45 A A A NE CZ NH2 ARG ARG ARG 111 111 111 N 1 7.23 0.90 118.30 125.53 A A A CB CG OD2 ASP ASP ASP 119 119 119 N 0.2030000 0.1310000 0.1240000 1.50 10.0 1349 18054 17993 5.0 99.6 RANDOM 1 FREE R 1.0 AB INITIO ENGH & HUBER 1.50 10.0 153 2147 37 0 1957 0.018 2.14 1.50 25.0 1KLL 18054 0.0460000 1 12.7 3.64 99.9 0.3010000 1.50 1.55 4.0 1776 3.6 100.0 phasing SHELXS refinement SHELXL-97 data reduction DENZO data scaling SCALEPACK Molecular basis of mitomycin C resictance in streptomyces: Crystal structures of the MRD protein with and without a drug derivative 1 N N 2 N N 3 N N The second part of the biological assembly is generated by the crystallographic two fold axis A ASP 14 A ASP 14 HELX_P A MSE 25 A MSE 25 1 1 12 A GLU 32 A GLU 32 HELX_P A ALA 36 A ALA 36 5 2 5 A ASP 44 A ASP 44 HELX_P A GLY 46 A GLY 46 5 3 3 A VAL 54 A VAL 54 HELX_P A ASP 61 A ASP 61 1 4 8 A ASP 81 A ASP 81 HELX_P A ALA 95 A ALA 95 1 5 15 covale 1.333 both A ASP 14 A C ASP 14 1_555 A MSE 15 A N MSE 15 1_555 covale 1.340 both A MSE 15 A C MSE 15 1_555 A ALA 16 A N ALA 16 1_555 covale 1.323 both A SER 18 A C SER 18 1_555 A MSE 19 A N MSE 19 1_555 covale 1.339 both A MSE 19 A C MSE 19 1_555 A GLU 20 A N GLU 20 1_555 covale 1.342 both A LYS 24 A C LYS 24 1_555 A MSE 25 A N MSE 25 1_555 covale 1.335 both A MSE 25 A C MSE 25 1_555 A GLY 26 A N GLY 26 1_555 ANTIMICROBIAL PROTEIN Mitomycin C, antibiotic resistance, SAD, anomalous diffraction, domain swapping, p-staking, ANTIMICROBIAL PROTEIN O05205_STRLA UNP 1 1 O05205 MSARISLFAVVVEDMAKSLEFYRKLGVEIPAEADSAPHTEAVLDGGIRLAWDTVETVRSYDPEWQAPTGGHRFAIAFEFP DTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDLFAPLP 1 130 1KLL 1 130 O05205 A 1 1 130 1 MET cloning artifact MSE 15 1KLL A O05205 UNP 15 15 1 LEU engineered mutation MSE 19 1KLL A O05205 UNP 19 19 1 LEU engineered mutation MSE 25 1KLL A O05205 UNP 25 25 3 4 parallel anti-parallel parallel anti-parallel anti-parallel A LEU 7 A LEU 7 A VAL 12 A VAL 12 A ARG 48 A ARG 48 A THR 53 A THR 53 A HIS 38 A HIS 38 A VAL 42 A VAL 42 A ALA 74 A ALA 74 A GLU 78 A GLU 78 A VAL 122 A VAL 122 A PRO 128 A PRO 128 A GLN 110 A GLN 110 A LYS 116 A LYS 116 A GLU 98 A GLU 98 A ASN 105 A ASN 105 BINDING SITE FOR RESIDUE MC A 9138 A MC 9138 Software 13 A HIS 38 A HIS 38 13 1_555 A ASP 52 A ASP 52 13 1_555 A THR 56 A THR 56 13 1_555 A TYR 60 A TYR 60 13 1_555 A VAL 107 A VAL 107 13 1_655 A TRP 108 A TRP 108 13 2_556 A GLN 110 A GLN 110 13 2_556 A TYR 112 A TYR 112 13 2_556 A PHE 126 A PHE 126 13 2_556 A HOH 9139 C HOH 13 1_555 A HOH 9173 C HOH 13 2_556 A HOH 9183 C HOH 13 1_555 A HOH 9226 C HOH 13 1_655 5 monoclinic C 1 2 1