0.019470 0.011241 0.000000 0.000000 0.022482 0.000000 0.000000 0.000000 0.004856 0.00000 0.00000 0.00000 Luethy, L. Gruetter, M.G. Mittl, P.R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 51.360 51.360 205.941 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 277 10187 10193 10.1074/jbc.M108993200 11777911 The crystal structure of Helicobacter pylori cysteine-rich protein B reveals a novel fold for a penicillin-binding protein. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 1 SINGLE WAVELENGTH M x-ray 1 0.9791 1.0 0.9794 1.0 0.8856 1.0 0.9330 1.0 BM14 ESRF 0.9791, 0.9794, 0.8856 SYNCHROTRON ESRF BEAMLINE BM14 ID14-3 ESRF 0.9330 SYNCHROTRON ESRF BEAMLINE ID14-3 15367.736 Cysteine Rich Protein B 1 man polymer 18.015 water 189 nat water no no MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Helicobacter Escherichia Escherichia coli sample HP0336 210 Helicobacter pylori 469008 Escherichia coli BL21(DE3) BL21(DE3) Plasmid pTFT74 2 2.4 48.9 VAPOR DIFFUSION, SITTING DROP 3 PEG 8000, sodium citrate, pH 3, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 software repository Initial release Version format compliance Version format compliance Data collection Refinement description 1 0 2002-09-11 1 1 2008-04-27 1 2 2011-07-13 1 3 2019-07-24 _software.classification _software.name _software.version RCSB Y RCSB 2001-12-13 REL REL HOH water HOH 136 2 HOH HOH 139 A HOH 137 2 HOH HOH 140 A HOH 138 2 HOH HOH 141 A HOH 139 2 HOH HOH 142 A HOH 140 2 HOH HOH 143 A HOH 141 2 HOH HOH 144 A HOH 142 2 HOH HOH 145 A HOH 143 2 HOH HOH 146 A HOH 145 2 HOH HOH 147 A HOH 146 2 HOH HOH 148 A HOH 147 2 HOH HOH 149 A HOH 148 2 HOH HOH 150 A HOH 149 2 HOH HOH 151 A HOH 150 2 HOH HOH 152 A HOH 151 2 HOH HOH 153 A HOH 152 2 HOH HOH 154 A HOH 153 2 HOH HOH 155 A HOH 154 2 HOH HOH 156 A HOH 155 2 HOH HOH 157 A HOH 156 2 HOH HOH 158 A HOH 157 2 HOH HOH 159 A HOH 158 2 HOH HOH 160 A HOH 159 2 HOH HOH 161 A HOH 160 2 HOH HOH 162 A HOH 161 2 HOH HOH 163 A HOH 162 2 HOH HOH 164 A HOH 163 2 HOH HOH 165 A HOH 164 2 HOH HOH 166 A HOH 165 2 HOH HOH 167 A HOH 166 2 HOH HOH 168 A HOH 167 2 HOH HOH 169 A HOH 168 2 HOH HOH 170 A HOH 169 2 HOH HOH 171 A HOH 170 2 HOH HOH 172 A HOH 171 2 HOH HOH 173 A HOH 172 2 HOH HOH 174 A HOH 173 2 HOH HOH 175 A HOH 174 2 HOH HOH 176 A HOH 175 2 HOH HOH 177 A HOH 176 2 HOH HOH 178 A HOH 177 2 HOH HOH 179 A HOH 178 2 HOH HOH 180 A HOH 179 2 HOH HOH 181 A HOH 180 2 HOH HOH 182 A HOH 181 2 HOH HOH 183 A HOH 182 2 HOH HOH 184 A HOH 183 2 HOH HOH 185 A HOH 184 2 HOH HOH 186 A HOH 185 2 HOH HOH 187 A HOH 186 2 HOH HOH 188 A HOH 187 2 HOH HOH 189 A HOH 188 2 HOH HOH 190 A HOH 189 2 HOH HOH 191 A HOH 190 2 HOH HOH 192 A HOH 191 2 HOH HOH 193 A HOH 192 2 HOH HOH 194 A HOH 193 2 HOH HOH 195 A HOH 194 2 HOH HOH 196 A HOH 195 2 HOH HOH 197 A HOH 196 2 HOH HOH 198 A HOH 197 2 HOH HOH 199 A HOH 198 2 HOH HOH 200 A HOH 199 2 HOH HOH 201 A HOH 200 2 HOH HOH 202 A HOH 201 2 HOH HOH 203 A HOH 202 2 HOH HOH 204 A HOH 203 2 HOH HOH 205 A HOH 204 2 HOH HOH 206 A HOH 205 2 HOH HOH 207 A HOH 206 2 HOH HOH 208 A HOH 207 2 HOH HOH 209 A HOH 208 2 HOH HOH 210 A HOH 209 2 HOH HOH 211 A HOH 210 2 HOH HOH 212 A HOH 211 2 HOH HOH 213 A HOH 212 2 HOH HOH 214 A HOH 213 2 HOH HOH 215 A HOH 214 2 HOH HOH 216 A HOH 215 2 HOH HOH 217 A HOH 216 2 HOH HOH 218 A HOH 217 2 HOH HOH 219 A HOH 218 2 HOH HOH 220 A HOH 219 2 HOH HOH 221 A HOH 220 2 HOH HOH 222 A HOH 221 2 HOH HOH 223 A HOH 222 2 HOH HOH 224 A HOH 223 2 HOH HOH 225 A HOH 224 2 HOH HOH 226 A HOH 225 2 HOH HOH 227 A HOH 226 2 HOH HOH 228 A HOH 227 2 HOH HOH 229 A HOH 228 2 HOH HOH 230 A HOH 229 2 HOH HOH 231 A HOH 230 2 HOH HOH 232 A HOH 231 2 HOH HOH 233 A HOH 232 2 HOH HOH 234 A HOH 233 2 HOH HOH 235 A HOH 234 2 HOH HOH 236 A HOH 235 2 HOH HOH 237 A HOH 236 2 HOH HOH 238 A HOH 237 2 HOH HOH 239 A HOH 238 2 HOH HOH 240 A HOH 239 2 HOH HOH 241 A HOH 240 2 HOH HOH 242 A HOH 241 2 HOH HOH 243 A HOH 242 2 HOH HOH 244 A HOH 243 2 HOH HOH 245 A HOH 244 2 HOH HOH 246 A HOH 245 2 HOH HOH 247 A HOH 246 2 HOH HOH 248 A HOH 247 2 HOH HOH 249 A HOH 248 2 HOH HOH 250 A HOH 249 2 HOH HOH 251 A HOH 250 2 HOH HOH 252 A HOH 251 2 HOH HOH 253 A HOH 252 2 HOH HOH 254 A HOH 253 2 HOH HOH 255 A HOH 254 2 HOH HOH 256 A HOH 255 2 HOH HOH 257 A HOH 256 2 HOH HOH 258 A HOH 257 2 HOH HOH 259 A HOH 258 2 HOH HOH 260 A HOH 259 2 HOH HOH 261 A HOH 260 2 HOH HOH 262 A HOH 261 2 HOH HOH 263 A HOH 262 2 HOH HOH 264 A HOH 263 2 HOH HOH 265 A HOH 264 2 HOH HOH 266 A HOH 265 2 HOH HOH 267 A HOH 266 2 HOH HOH 268 A HOH 267 2 HOH HOH 269 A HOH 268 2 HOH HOH 270 A HOH 269 2 HOH HOH 271 A HOH 270 2 HOH HOH 272 A HOH 271 2 HOH HOH 273 A HOH 272 2 HOH HOH 274 A HOH 273 2 HOH HOH 275 A HOH 274 2 HOH HOH 276 A HOH 275 2 HOH HOH 277 A HOH 276 2 HOH HOH 278 A HOH 277 2 HOH HOH 279 A HOH 278 2 HOH HOH 280 A HOH 279 2 HOH HOH 281 A HOH 280 2 HOH HOH 282 A HOH 281 2 HOH HOH 283 A HOH 282 2 HOH HOH 284 A HOH 283 2 HOH HOH 285 A HOH 284 2 HOH HOH 286 A HOH 285 2 HOH HOH 287 A HOH 286 2 HOH HOH 288 A HOH 287 2 HOH HOH 289 A HOH 288 2 HOH HOH 290 A HOH 289 2 HOH HOH 291 A HOH 290 2 HOH HOH 292 A HOH 291 2 HOH HOH 293 A HOH 292 2 HOH HOH 294 A HOH 293 2 HOH HOH 295 A HOH 294 2 HOH HOH 296 A HOH 295 2 HOH HOH 297 A HOH 296 2 HOH HOH 298 A HOH 297 2 HOH HOH 299 A HOH 298 2 HOH HOH 300 A HOH 299 2 HOH HOH 301 A HOH 300 2 HOH HOH 302 A HOH 301 2 HOH HOH 303 A HOH 302 2 HOH HOH 304 A HOH 303 2 HOH HOH 305 A HOH 304 2 HOH HOH 306 A HOH 305 2 HOH HOH 307 A HOH 306 2 HOH HOH 308 A HOH 307 2 HOH HOH 309 A HOH 308 2 HOH HOH 310 A HOH 309 2 HOH HOH 311 A HOH 310 2 HOH HOH 312 A HOH 311 2 HOH HOH 313 A HOH 312 2 HOH HOH 314 A HOH 313 2 HOH HOH 315 A HOH 314 2 HOH HOH 316 A HOH 315 2 HOH HOH 317 A HOH 316 2 HOH HOH 318 A HOH 317 2 HOH HOH 319 A HOH 318 2 HOH HOH 320 A HOH 319 2 HOH HOH 321 A HOH 320 2 HOH HOH 322 A HOH 321 2 HOH HOH 323 A HOH 322 2 HOH HOH 324 A HOH 323 2 HOH HOH 325 A HOH 324 2 HOH HOH 326 A HOH 325 2 HOH HOH 327 A n 1 1 A n 2 2 A GLY 3 n 3 GLY 3 A GLY 4 n 4 GLY 4 A GLY 5 n 5 GLY 5 A THR 6 n 6 THR 6 A VAL 7 n 7 VAL 7 A LYS 8 n 8 LYS 8 A LYS 9 n 9 LYS 9 A ASP 10 n 10 ASP 10 A LEU 11 n 11 LEU 11 A LYS 12 n 12 LYS 12 A LYS 13 n 13 LYS 13 A ALA 14 n 14 ALA 14 A ILE 15 n 15 ILE 15 A GLN 16 n 16 GLN 16 A TYR 17 n 17 TYR 17 A TYR 18 n 18 TYR 18 A VAL 19 n 19 VAL 19 A LYS 20 n 20 LYS 20 A ALA 21 n 21 ALA 21 A CYS 22 n 22 CYS 22 A GLU 23 n 23 GLU 23 A LEU 24 n 24 LEU 24 A ASN 25 n 25 ASN 25 A GLU 26 n 26 GLU 26 A MET 27 n 27 MET 27 A PHE 28 n 28 PHE 28 A GLY 29 n 29 GLY 29 A CYS 30 n 30 CYS 30 A LEU 31 n 31 LEU 31 A SER 32 n 32 SER 32 A LEU 33 n 33 LEU 33 A VAL 34 n 34 VAL 34 A SER 35 n 35 SER 35 A ASN 36 n 36 ASN 36 A SER 37 n 37 SER 37 A GLN 38 n 38 GLN 38 A ILE 39 n 39 ILE 39 A ASN 40 n 40 ASN 40 A LYS 41 n 41 LYS 41 A GLN 42 n 42 GLN 42 A LYS 43 n 43 LYS 43 A LEU 44 n 44 LEU 44 A PHE 45 n 45 PHE 45 A GLN 46 n 46 GLN 46 A TYR 47 n 47 TYR 47 A LEU 48 n 48 LEU 48 A SER 49 n 49 SER 49 A LYS 50 n 50 LYS 50 A ALA 51 n 51 ALA 51 A CYS 52 n 52 CYS 52 A GLU 53 n 53 GLU 53 A LEU 54 n 54 LEU 54 A ASN 55 n 55 ASN 55 A SER 56 n 56 SER 56 A GLY 57 n 57 GLY 57 A ASN 58 n 58 ASN 58 A GLY 59 n 59 GLY 59 A CYS 60 n 60 CYS 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A LEU 63 n 63 LEU 63 A GLY 64 n 64 GLY 64 A ASP 65 n 65 ASP 65 A PHE 66 n 66 PHE 66 A TYR 67 n 67 TYR 67 A GLU 68 n 68 GLU 68 A ASN 69 n 69 ASN 69 A GLY 70 n 70 GLY 70 A LYS 71 n 71 LYS 71 A TYR 72 n 72 TYR 72 A VAL 73 n 73 VAL 73 A LYS 74 n 74 LYS 74 A LYS 75 n 75 LYS 75 A ASP 76 n 76 ASP 76 A LEU 77 n 77 LEU 77 A ARG 78 n 78 ARG 78 A LYS 79 n 79 LYS 79 A ALA 80 n 80 ALA 80 A ALA 81 n 81 ALA 81 A GLN 82 n 82 GLN 82 A TYR 83 n 83 TYR 83 A TYR 84 n 84 TYR 84 A SER 85 n 85 SER 85 A LYS 86 n 86 LYS 86 A ALA 87 n 87 ALA 87 A CYS 88 n 88 CYS 88 A GLY 89 n 89 GLY 89 A LEU 90 n 90 LEU 90 A ASN 91 n 91 ASN 91 A ASP 92 n 92 ASP 92 A GLN 93 n 93 GLN 93 A ASP 94 n 94 ASP 94 A GLY 95 n 95 GLY 95 A CYS 96 n 96 CYS 96 A LEU 97 n 97 LEU 97 A ILE 98 n 98 ILE 98 A LEU 99 n 99 LEU 99 A GLY 100 n 100 GLY 100 A TYR 101 n 101 TYR 101 A LYS 102 n 102 LYS 102 A GLN 103 n 103 GLN 103 A TYR 104 n 104 TYR 104 A ALA 105 n 105 ALA 105 A GLY 106 n 106 GLY 106 A LYS 107 n 107 LYS 107 A GLY 108 n 108 GLY 108 A VAL 109 n 109 VAL 109 A VAL 110 n 110 VAL 110 A LYS 111 n 111 LYS 111 A ASN 112 n 112 ASN 112 A GLU 113 n 113 GLU 113 A LYS 114 n 114 LYS 114 A GLN 115 n 115 GLN 115 A ALA 116 n 116 ALA 116 A VAL 117 n 117 VAL 117 A LYS 118 n 118 LYS 118 A THR 119 n 119 THR 119 A PHE 120 n 120 PHE 120 A GLU 121 n 121 GLU 121 A LYS 122 n 122 LYS 122 A ALA 123 n 123 ALA 123 A CYS 124 n 124 CYS 124 A ARG 125 n 125 ARG 125 A LEU 126 n 126 LEU 126 A GLY 127 n 127 GLY 127 A SER 128 n 128 SER 128 A GLU 129 n 129 GLU 129 A ASP 130 n 130 ASP 130 A ALA 131 n 131 ALA 131 A CYS 132 n 132 CYS 132 A GLY 133 n 133 GLY 133 A ILE 134 n 134 ILE 134 A LEU 135 n 135 LEU 135 A n 136 136 A n 137 137 A n 138 138 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A MET 1 A MET 1 1 Y 1 A VAL 2 A VAL 2 1 Y 1 A ASN 136 A ASN 136 1 Y 1 A ASN 137 A ASN 137 1 Y 1 A TYR 138 A TYR 138 1 Y 1 A A O O HOH HOH 318 319 2.03 1 A A OE1 O GLU HOH 113 232 2.06 1 A A O O HOH HOH 144 148 2.17 1 A A O O HOH HOH 160 221 2.18 1 10.31 1.40 112.40 122.71 A A A CA CB CG2 THR THR THR 6 6 6 N 1 3.74 0.60 121.00 124.74 A A A CB CG CD2 TYR TYR TYR 17 17 17 N 1 5.80 0.90 118.30 124.10 A A A CB CG OD1 ASP ASP ASP 76 76 76 N 1 A A CD1 CE1 TYR TYR 47 47 0.113 0.015 1.389 1.502 N 1 A A CE2 CD2 TYR TYR 67 67 0.121 0.015 1.389 1.510 N 1 A A CB CG1 VAL VAL 73 73 -0.140 0.021 1.524 1.384 N 1 A A CB CG2 VAL VAL 73 73 0.166 0.021 1.524 1.690 N 1 A A CE2 CD2 TYR TYR 83 83 0.111 0.015 1.389 1.500 N 1 A A CA CB ALA ALA 87 87 0.141 0.021 1.520 1.661 N 1 A A CG CD2 TYR TYR 101 101 0.092 0.013 1.387 1.479 N 1 A A CD NE2 GLN GLN 115 115 0.178 0.025 1.324 1.502 N 1 A A O O HOH HOH 200 277 2.12 1_555 10_665 1 A A O O HOH HOH 200 327 2.16 1_555 10_665 32.926 0.78 0.39 0.00 0.78 0.00 -1.17 0.951 0.23844 0.18672 0.19232 1.950 30 1239 12606 12049 10.28 95.58 3.738 0.108 RANDOM 1 THROUGHOUT 0 MAD 0.173 0.164 BABINET MODEL WITH MASK 1.950 30 189 1218 0 0 1029 0.040 0.022 1047 2.438 1.988 1396 3.741 3.000 132 12.891 15.000 206 0.225 0.200 145 0.015 0.020 770 0.234 0.300 533 0.225 0.500 109 0.237 0.300 45 0.220 0.500 19 2.043 1.500 650 3.344 2.000 1020 5.829 3.000 397 9.609 4.500 376 0.238 0.199 2.001 62 730 20 1.95 30 1KLX 12606 12049 2 2 1 95.6 1.95 2.001 95.6 refinement REFMAC 5.0 data scaling SCALEPACK refinement CNS data reduction DENZO phasing CNS Cysteine Rich Protein B Helicobacter pylori cysteine rich protein B (hcpB) 1 N N 2 N N A THR 6 A THR 6 HELX_P A LEU 24 A LEU 24 1 1 19 A PHE 28 A PHE 28 HELX_P A SER 35 A SER 35 1 2 8 A ASN 40 A ASN 40 HELX_P A LEU 54 A LEU 54 1 3 15 A SER 56 A SER 56 HELX_P A GLY 70 A GLY 70 1 4 15 A ASP 76 A ASP 76 HELX_P A LEU 90 A LEU 90 1 5 15 A ASP 92 A ASP 92 HELX_P A GLY 106 A GLY 106 1 6 15 A ASN 112 A ASN 112 HELX_P A LEU 126 A LEU 126 1 7 15 A SER 128 A SER 128 HELX_P A LEU 135 A LEU 135 1 8 8 disulf 1.968 A CYS 22 A SG CYS 22 1_555 A CYS 30 A SG CYS 30 1_555 disulf 2.038 A CYS 52 A SG CYS 52 1_555 A CYS 60 A SG CYS 60 1_555 disulf 1.981 A CYS 88 A SG CYS 88 1_555 A CYS 96 A SG CYS 96 1_555 disulf 1.942 A CYS 124 A SG CYS 124 1_555 A CYS 132 A SG CYS 132 1_555 HYDROLASE Structural Genomics, helix-turn-helix, right handed super helix, modular structure', HYDROLASE HCPB_HELPY UNP 1 1 O25103 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY 1 138 1KLX 1 138 O25103 A 1 1 138 179 P 65 2 2