0.017147 0.000000 0.000000 0.000000 0.009672 0.000000 0.000000 0.000000 0.013566 0.00000 0.00000 0.00000 Wu, N. Gillon, W. Pai, E.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 58.320 103.387 73.713 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C10 H13 N2 O11 P 368.191 OROTIDINE-5'-MONOPHOSPHATE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N P N 251 N O N 252 N O N 253 N O N 254 N O N 255 N C N 256 R C N 257 N O N 258 S C N 259 N O N 260 R C N 261 N O N 262 R C N 263 N N N 264 N C N 265 N O N 266 N N N 267 N C N 268 N O N 269 N C N 270 N C N 271 N C N 272 N O N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C N 315 N C N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 R C N 346 N O N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N doub N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing Y 286 N doub Y 287 N sing Y 288 N sing N 289 N sing Y 290 N doub N 291 N sing Y 292 N doub N 293 N sing Y 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing Y 355 N doub Y 356 N sing Y 357 N sing N 358 N sing Y 359 N doub N 360 N sing Y 361 N doub N 362 N sing Y 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing US Biochemistry BICHAW 0033 0006-2960 41 4002 4011 10.1021/bi015758p 11900543 Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography. 2002 10.2210/pdb1km6/pdb pdb_00001km6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 bent conical Si-mirror (Rh coating) CCD 2000-07-15 ADSC QUANTUM 4 bend cylindrical Ge(111) monochromator SINGLE WAVELENGTH M x-ray 1 1.000 1.0 14-BM-C APS 1.000 SYNCHROTRON APS BEAMLINE 14-BM-C 26693.734 OROTIDINE 5'-PHOSPHATE DECARBOXYLASE 4.1.1.23 D70A/K72A 1 man polymer 368.191 OROTIDINE-5'-MONOPHOSPHATE 1 syn non-polymer 18.015 water 207 nat water OMP DECARBOXYLASE; OMPDCASE E.C.4.1.1.23 no no MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIAAFAVADIPETN EKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR PERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLIPEDPAANKARKEA ELAAATA MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIAAFAVADIPETN EKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR PERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLIPEDPAANKARKEA ELAAATA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanothermobacter Escherichia sample 145262 Methanothermobacter thermautotrophicus 562 Escherichia coli plasmid pET15b 1 2.08 40.88 VAPOR DIFFUSION, HANGING DROP 7.5 trisodium citrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP at 298K 298 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Derived calculations Version format compliance Database references Derived calculations Data collection 1 0 2002-06-28 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-12-13 REL OMP OROTIDINE-5'-MONOPHOSPHATE HOH water OMP 2001 2 OMP OMP 2001 A HOH 3001 3 HOH HOH 3001 A HOH 3002 3 HOH HOH 3002 A HOH 3003 3 HOH HOH 3003 A HOH 3004 3 HOH HOH 3004 A HOH 3005 3 HOH HOH 3005 A HOH 3006 3 HOH HOH 3006 A HOH 3007 3 HOH HOH 3007 A HOH 3008 3 HOH HOH 3008 A HOH 3009 3 HOH HOH 3009 A HOH 3010 3 HOH HOH 3010 A HOH 3011 3 HOH HOH 3011 A HOH 3012 3 HOH HOH 3012 A HOH 3013 3 HOH HOH 3013 A HOH 3014 3 HOH HOH 3014 A HOH 3015 3 HOH HOH 3015 A HOH 3016 3 HOH HOH 3016 A HOH 3017 3 HOH HOH 3017 A HOH 3018 3 HOH HOH 3018 A HOH 3019 3 HOH HOH 3019 A HOH 3020 3 HOH HOH 3020 A HOH 3021 3 HOH HOH 3021 A HOH 3022 3 HOH HOH 3022 A HOH 3023 3 HOH HOH 3023 A HOH 3024 3 HOH HOH 3024 A HOH 3025 3 HOH HOH 3025 A HOH 3026 3 HOH HOH 3026 A HOH 3027 3 HOH HOH 3027 A HOH 3028 3 HOH HOH 3028 A HOH 3029 3 HOH HOH 3029 A HOH 3030 3 HOH HOH 3030 A HOH 3031 3 HOH HOH 3031 A HOH 3032 3 HOH HOH 3032 A HOH 3033 3 HOH HOH 3033 A HOH 3034 3 HOH HOH 3034 A HOH 3035 3 HOH HOH 3035 A HOH 3036 3 HOH HOH 3036 A HOH 3037 3 HOH HOH 3037 A HOH 3038 3 HOH HOH 3038 A HOH 3039 3 HOH HOH 3039 A HOH 3040 3 HOH HOH 3040 A HOH 3041 3 HOH HOH 3041 A HOH 3042 3 HOH HOH 3042 A HOH 3043 3 HOH HOH 3043 A HOH 3044 3 HOH HOH 3044 A HOH 3046 3 HOH HOH 3046 A HOH 3047 3 HOH HOH 3047 A HOH 3048 3 HOH HOH 3048 A HOH 3049 3 HOH HOH 3049 A HOH 3050 3 HOH HOH 3050 A HOH 3051 3 HOH HOH 3051 A HOH 3052 3 HOH HOH 3052 A HOH 3053 3 HOH HOH 3053 A HOH 3054 3 HOH HOH 3054 A HOH 3055 3 HOH HOH 3055 A HOH 3056 3 HOH HOH 3056 A HOH 3057 3 HOH HOH 3057 A HOH 3058 3 HOH HOH 3058 A HOH 3059 3 HOH HOH 3059 A HOH 3060 3 HOH HOH 3060 A HOH 3061 3 HOH HOH 3061 A HOH 3062 3 HOH HOH 3062 A HOH 3063 3 HOH HOH 3063 A HOH 3064 3 HOH HOH 3064 A HOH 3065 3 HOH HOH 3065 A HOH 3066 3 HOH HOH 3066 A HOH 3067 3 HOH HOH 3067 A HOH 3068 3 HOH HOH 3068 A HOH 3069 3 HOH HOH 3069 A HOH 3070 3 HOH HOH 3070 A HOH 3071 3 HOH HOH 3071 A HOH 3072 3 HOH HOH 3072 A HOH 3073 3 HOH HOH 3073 A HOH 3074 3 HOH HOH 3074 A HOH 3075 3 HOH HOH 3075 A HOH 3076 3 HOH HOH 3076 A HOH 3077 3 HOH HOH 3077 A HOH 3078 3 HOH HOH 3078 A HOH 3079 3 HOH HOH 3079 A HOH 3080 3 HOH HOH 3080 A HOH 3081 3 HOH HOH 3081 A HOH 3082 3 HOH HOH 3082 A HOH 3083 3 HOH HOH 3083 A HOH 3084 3 HOH HOH 3084 A HOH 3085 3 HOH HOH 3085 A HOH 3086 3 HOH HOH 3086 A HOH 3087 3 HOH HOH 3087 A HOH 3088 3 HOH HOH 3088 A HOH 3089 3 HOH HOH 3089 A HOH 3090 3 HOH HOH 3090 A HOH 3091 3 HOH HOH 3091 A HOH 3092 3 HOH HOH 3092 A HOH 3093 3 HOH HOH 3093 A HOH 3094 3 HOH HOH 3094 A HOH 3095 3 HOH HOH 3095 A HOH 3096 3 HOH HOH 3096 A HOH 3097 3 HOH HOH 3097 A HOH 3098 3 HOH HOH 3098 A HOH 3099 3 HOH HOH 3099 A HOH 3100 3 HOH HOH 3100 A HOH 3101 3 HOH HOH 3101 A HOH 3102 3 HOH HOH 3102 A HOH 3103 3 HOH HOH 3103 A HOH 3104 3 HOH HOH 3104 A HOH 3105 3 HOH HOH 3105 A HOH 3106 3 HOH HOH 3106 A HOH 3107 3 HOH HOH 3107 A HOH 3108 3 HOH HOH 3108 A HOH 3109 3 HOH HOH 3109 A HOH 3110 3 HOH HOH 3110 A HOH 3111 3 HOH HOH 3111 A HOH 3112 3 HOH HOH 3112 A HOH 3113 3 HOH HOH 3113 A HOH 3114 3 HOH HOH 3114 A HOH 3115 3 HOH HOH 3115 A HOH 3116 3 HOH HOH 3116 A HOH 3117 3 HOH HOH 3117 A HOH 3118 3 HOH HOH 3118 A HOH 3119 3 HOH HOH 3119 A HOH 3120 3 HOH HOH 3120 A HOH 3121 3 HOH HOH 3121 A HOH 3122 3 HOH HOH 3122 A HOH 3123 3 HOH HOH 3123 A HOH 3124 3 HOH HOH 3124 A HOH 3125 3 HOH HOH 3125 A HOH 3126 3 HOH HOH 3126 A HOH 3127 3 HOH HOH 3127 A HOH 3128 3 HOH HOH 3128 A HOH 3129 3 HOH HOH 3129 A HOH 3130 3 HOH HOH 3130 A HOH 3131 3 HOH HOH 3131 A HOH 3132 3 HOH HOH 3132 A HOH 3133 3 HOH HOH 3133 A HOH 3134 3 HOH HOH 3134 A HOH 3135 3 HOH HOH 3135 A HOH 3136 3 HOH HOH 3136 A HOH 3137 3 HOH HOH 3137 A HOH 3138 3 HOH HOH 3138 A HOH 3139 3 HOH HOH 3139 A HOH 3140 3 HOH HOH 3140 A HOH 3141 3 HOH HOH 3141 A HOH 3142 3 HOH HOH 3142 A HOH 3143 3 HOH HOH 3143 A HOH 3144 3 HOH HOH 3144 A HOH 3145 3 HOH HOH 3145 A HOH 3146 3 HOH HOH 3146 A HOH 3147 3 HOH HOH 3147 A HOH 3148 3 HOH HOH 3148 A HOH 3149 3 HOH HOH 3149 A HOH 3150 3 HOH HOH 3150 A HOH 3151 3 HOH HOH 3151 A HOH 3152 3 HOH HOH 3152 A HOH 3153 3 HOH HOH 3153 A HOH 3154 3 HOH HOH 3154 A HOH 3155 3 HOH HOH 3155 A HOH 3156 3 HOH HOH 3156 A HOH 3157 3 HOH HOH 3157 A HOH 3158 3 HOH HOH 3158 A HOH 3159 3 HOH HOH 3159 A HOH 3160 3 HOH HOH 3160 A HOH 3161 3 HOH HOH 3161 A HOH 3162 3 HOH HOH 3162 A HOH 3163 3 HOH HOH 3163 A HOH 3164 3 HOH HOH 3164 A HOH 3165 3 HOH HOH 3165 A HOH 3166 3 HOH HOH 3166 A HOH 3167 3 HOH HOH 3167 A HOH 3168 3 HOH HOH 3168 A HOH 3169 3 HOH HOH 3169 A HOH 3170 3 HOH HOH 3170 A HOH 3171 3 HOH HOH 3171 A HOH 3172 3 HOH HOH 3172 A HOH 3173 3 HOH HOH 3173 A HOH 3174 3 HOH HOH 3174 A HOH 3175 3 HOH HOH 3175 A HOH 3176 3 HOH HOH 3176 A HOH 3177 3 HOH HOH 3177 A HOH 3178 3 HOH HOH 3178 A HOH 3179 3 HOH HOH 3179 A HOH 3180 3 HOH HOH 3180 A HOH 3181 3 HOH HOH 3181 A HOH 3182 3 HOH HOH 3182 A HOH 3183 3 HOH HOH 3183 A HOH 3184 3 HOH HOH 3184 A HOH 3185 3 HOH HOH 3185 A HOH 3186 3 HOH HOH 3186 A HOH 3187 3 HOH HOH 3187 A HOH 3188 3 HOH HOH 3188 A HOH 3189 3 HOH HOH 3189 A HOH 3190 3 HOH HOH 3190 A HOH 3191 3 HOH HOH 3191 A HOH 3192 3 HOH HOH 3192 A HOH 3193 3 HOH HOH 3193 A HOH 3194 3 HOH HOH 3194 A HOH 3195 3 HOH HOH 3195 A HOH 3196 3 HOH HOH 3196 A HOH 3197 3 HOH HOH 3197 A HOH 3198 3 HOH HOH 3198 A HOH 3199 3 HOH HOH 3199 A HOH 3200 3 HOH HOH 3200 A HOH 3201 3 HOH HOH 3201 A HOH 3202 3 HOH HOH 3202 A HOH 3203 3 HOH HOH 3203 A HOH 3204 3 HOH HOH 3204 A HOH 3205 3 HOH HOH 3205 A HOH 3206 3 HOH HOH 3206 A HOH 3207 3 HOH HOH 3207 A HOH 3208 3 HOH HOH 3208 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A ILE 16 n 16 ILE 16 A LEU 17 n 17 LEU 17 A ALA 18 n 18 ALA 18 A MET 19 n 19 MET 19 A ASP 20 n 20 ASP 20 A LEU 21 n 21 LEU 21 A MET 22 n 22 MET 22 A ASN 23 n 23 ASN 23 A ARG 24 n 24 ARG 24 A ASP 25 n 25 ASP 25 A ASP 26 n 26 ASP 26 A ALA 27 n 27 ALA 27 A LEU 28 n 28 LEU 28 A ARG 29 n 29 ARG 29 A VAL 30 n 30 VAL 30 A THR 31 n 31 THR 31 A GLY 32 n 32 GLY 32 A GLU 33 n 33 GLU 33 A VAL 34 n 34 VAL 34 A ARG 35 n 35 ARG 35 A GLU 36 n 36 GLU 36 A TYR 37 n 37 TYR 37 A ILE 38 n 38 ILE 38 A ASP 39 n 39 ASP 39 A THR 40 n 40 THR 40 A VAL 41 n 41 VAL 41 A LYS 42 n 42 LYS 42 A ILE 43 n 43 ILE 43 A GLY 44 n 44 GLY 44 A TYR 45 n 45 TYR 45 A PRO 46 n 46 PRO 46 A LEU 47 n 47 LEU 47 A VAL 48 n 48 VAL 48 A LEU 49 n 49 LEU 49 A SER 50 n 50 SER 50 A GLU 51 n 51 GLU 51 A GLY 52 n 52 GLY 52 A MET 53 n 53 MET 53 A ASP 54 n 54 ASP 54 A ILE 55 n 55 ILE 55 A ILE 56 n 56 ILE 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A PHE 59 n 59 PHE 59 A ARG 60 n 60 ARG 60 A LYS 61 n 61 LYS 61 A ARG 62 n 62 ARG 62 A PHE 63 n 63 PHE 63 A GLY 64 n 64 GLY 64 A CYS 65 n 65 CYS 65 A ARG 66 n 66 ARG 66 A ILE 67 n 67 ILE 67 A ILE 68 n 68 ILE 68 A ALA 69 n 69 ALA 69 A ALA 70 n 70 ALA 70 A PHE 71 n 71 PHE 71 A ALA 72 n 72 ALA 72 A VAL 73 n 73 VAL 73 A ALA 74 n 74 ALA 74 A ASP 75 n 75 ASP 75 A ILE 76 n 76 ILE 76 A PRO 77 n 77 PRO 77 A GLU 78 n 78 GLU 78 A THR 79 n 79 THR 79 A ASN 80 n 80 ASN 80 A GLU 81 n 81 GLU 81 A LYS 82 n 82 LYS 82 A ILE 83 n 83 ILE 83 A CYS 84 n 84 CYS 84 A ARG 85 n 85 ARG 85 A ALA 86 n 86 ALA 86 A THR 87 n 87 THR 87 A PHE 88 n 88 PHE 88 A LYS 89 n 89 LYS 89 A ALA 90 n 90 ALA 90 A GLY 91 n 91 GLY 91 A ALA 92 n 92 ALA 92 A ASP 93 n 93 ASP 93 A ALA 94 n 94 ALA 94 A ILE 95 n 95 ILE 95 A ILE 96 n 96 ILE 96 A VAL 97 n 97 VAL 97 A HIS 98 n 98 HIS 98 A GLY 99 n 99 GLY 99 A PHE 100 n 100 PHE 100 A PRO 101 n 101 PRO 101 A GLY 102 n 102 GLY 102 A ALA 103 n 103 ALA 103 A ASP 104 n 104 ASP 104 A SER 105 n 105 SER 105 A VAL 106 n 106 VAL 106 A ARG 107 n 107 ARG 107 A ALA 108 n 108 ALA 108 A CYS 109 n 109 CYS 109 A LEU 110 n 110 LEU 110 A ASN 111 n 111 ASN 111 A VAL 112 n 112 VAL 112 A ALA 113 n 113 ALA 113 A GLU 114 n 114 GLU 114 A GLU 115 n 115 GLU 115 A MET 116 n 116 MET 116 A GLY 117 n 117 GLY 117 A ARG 118 n 118 ARG 118 A GLU 119 n 119 GLU 119 A VAL 120 n 120 VAL 120 A PHE 121 n 121 PHE 121 A LEU 122 n 122 LEU 122 A LEU 123 n 123 LEU 123 A THR 124 n 124 THR 124 A GLU 125 n 125 GLU 125 A MET 126 n 126 MET 126 A SER 127 n 127 SER 127 A HIS 128 n 128 HIS 128 A PRO 129 n 129 PRO 129 A GLY 130 n 130 GLY 130 A ALA 131 n 131 ALA 131 A GLU 132 n 132 GLU 132 A MET 133 n 133 MET 133 A PHE 134 n 134 PHE 134 A ILE 135 n 135 ILE 135 A GLN 136 n 136 GLN 136 A GLY 137 n 137 GLY 137 A ALA 138 n 138 ALA 138 A ALA 139 n 139 ALA 139 A ASP 140 n 140 ASP 140 A GLU 141 n 141 GLU 141 A ILE 142 n 142 ILE 142 A ALA 143 n 143 ALA 143 A ARG 144 n 144 ARG 144 A MET 145 n 145 MET 145 A GLY 146 n 146 GLY 146 A VAL 147 n 147 VAL 147 A ASP 148 n 148 ASP 148 A LEU 149 n 149 LEU 149 A GLY 150 n 150 GLY 150 A VAL 151 n 151 VAL 151 A LYS 152 n 152 LYS 152 A ASN 153 n 153 ASN 153 A TYR 154 n 154 TYR 154 A VAL 155 n 155 VAL 155 A GLY 156 n 156 GLY 156 A PRO 157 n 157 PRO 157 A SER 158 n 158 SER 158 A THR 159 n 159 THR 159 A ARG 160 n 160 ARG 160 A PRO 161 n 161 PRO 161 A GLU 162 n 162 GLU 162 A ARG 163 n 163 ARG 163 A LEU 164 n 164 LEU 164 A SER 165 n 165 SER 165 A ARG 166 n 166 ARG 166 A LEU 167 n 167 LEU 167 A ARG 168 n 168 ARG 168 A GLU 169 n 169 GLU 169 A ILE 170 n 170 ILE 170 A ILE 171 n 171 ILE 171 A GLY 172 n 172 GLY 172 A GLN 173 n 173 GLN 173 A ASP 174 n 174 ASP 174 A SER 175 n 175 SER 175 A PHE 176 n 176 PHE 176 A LEU 177 n 177 LEU 177 A ILE 178 n 178 ILE 178 A SER 179 n 179 SER 179 A PRO 180 n 180 PRO 180 A GLY 181 n 181 GLY 181 A VAL 182 n 182 VAL 182 A GLY 183 n 183 GLY 183 A ALA 184 n 184 ALA 184 A GLN 185 n 185 GLN 185 A GLY 186 n 186 GLY 186 A GLY 187 n 187 GLY 187 A ASP 188 n 188 ASP 188 A PRO 189 n 189 PRO 189 A GLY 190 n 190 GLY 190 A GLU 191 n 191 GLU 191 A THR 192 n 192 THR 192 A LEU 193 n 193 LEU 193 A ARG 194 n 194 ARG 194 A PHE 195 n 195 PHE 195 A ALA 196 n 196 ALA 196 A ASP 197 n 197 ASP 197 A ALA 198 n 198 ALA 198 A ILE 199 n 199 ILE 199 A ILE 200 n 200 ILE 200 A VAL 201 n 201 VAL 201 A GLY 202 n 202 GLY 202 A ARG 203 n 203 ARG 203 A SER 204 n 204 SER 204 A ILE 205 n 205 ILE 205 A TYR 206 n 206 TYR 206 A LEU 207 n 207 LEU 207 A ALA 208 n 208 ALA 208 A ASP 209 n 209 ASP 209 A ASN 210 n 210 ASN 210 A PRO 211 n 211 PRO 211 A ALA 212 n 212 ALA 212 A ALA 213 n 213 ALA 213 A ALA 214 n 214 ALA 214 A ALA 215 n 215 ALA 215 A ALA 216 n 216 ALA 216 A GLY 217 n 217 GLY 217 A ILE 218 n 218 ILE 218 A ILE 219 n 219 ILE 219 A GLU 220 n 220 GLU 220 A SER 221 n 221 SER 221 A ILE 222 n 222 ILE 222 A n 223 223 A n 224 224 A n 225 225 A n 226 226 A n 227 227 A n 228 228 A n 229 229 A n 230 230 A n 231 231 A n 232 232 A n 233 233 A n 234 234 A n 235 235 A n 236 236 A n 237 237 A n 238 238 A n 239 239 A n 240 240 A n 241 241 A n 242 242 A n 243 243 A n 244 244 A n 245 245 A n 246 246 A n 247 247 A author_defined_assembly 2 dimeric software_defined_assembly PISA,PQS 2 dimeric 4850 -44 15000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_656 -x+1,y,-z+3/2 crystal symmetry operation 58.3200000000 0.0000000000 110.5695000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_566 x,-y+1,-z+1 crystal symmetry operation 0.0000000000 103.3870000000 73.7130000000 A N LEU 17 A N LEU 17 A O LYS 42 A O LYS 42 A N VAL 41 A N VAL 41 A O ARG 66 A O ARG 66 A N ALA 69 A N ALA 69 A O ALA 94 A O ALA 94 A N VAL 97 A N VAL 97 A O LEU 123 A O LEU 123 A N LEU 122 A N LEU 122 A O ASN 153 A O ASN 153 A N TYR 154 A N TYR 154 A O PHE 176 A O PHE 176 A N SER 179 A N SER 179 A O ILE 200 A O ILE 200 A O ILE 199 A O ILE 199 A N ILE 16 A N ILE 16 1 A HOH 3001 C HOH 1 A HOH 3022 C HOH 1 A HOH 3205 C HOH 1 A MET 1 A MET 1 1 Y 1 A ARG 2 A ARG 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A ARG 4 A ARG 4 1 Y 1 A ARG 5 A ARG 5 1 Y 1 A VAL 6 A VAL 6 1 Y 1 A ASP 7 A ASP 7 1 Y 1 A VAL 8 A VAL 8 1 Y 1 A MET 9 A MET 9 1 Y 1 A ASP 10 A ASP 10 1 Y 1 A VAL 11 A VAL 11 1 Y 1 A MET 12 A MET 12 1 Y 1 A ASN 13 A ASN 13 1 Y 1 A LYS 223 A LYS 223 1 Y 1 A ASP 224 A ASP 224 1 Y 1 A LEU 225 A LEU 225 1 Y 1 A LEU 226 A LEU 226 1 Y 1 A ILE 227 A ILE 227 1 Y 1 A PRO 228 A PRO 228 1 Y 1 A GLU 229 A GLU 229 1 Y 1 A ASP 230 A ASP 230 1 Y 1 A PRO 231 A PRO 231 1 Y 1 A ALA 232 A ALA 232 1 Y 1 A ALA 233 A ALA 233 1 Y 1 A ASN 234 A ASN 234 1 Y 1 A LYS 235 A LYS 235 1 Y 1 A ALA 236 A ALA 236 1 Y 1 A ARG 237 A ARG 237 1 Y 1 A LYS 238 A LYS 238 1 Y 1 A GLU 239 A GLU 239 1 Y 1 A ALA 240 A ALA 240 1 Y 1 A GLU 241 A GLU 241 1 Y 1 A LEU 242 A LEU 242 1 Y 1 A ALA 243 A ALA 243 1 Y 1 A ALA 244 A ALA 244 1 Y 1 A ALA 245 A ALA 245 1 Y 1 A THR 246 A THR 246 1 Y 1 A ALA 247 A ALA 247 1 Y 1 A A NH1 NH1 ARG ARG 66 66 1.96 1_555 3_656 1 A ALA 72 36.86 52.42 1 A ALA 74 -149.53 49.02 1 A ASP 75 -120.47 -169.71 1 A THR 124 -93.62 -88.40 1 A PHE 134 -131.72 -37.88 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP OMP.PARAM OMP.TOP 16.8 -0.79 0.00 0.00 -3.15 0.00 3.94 0.1940000 0.004 0.1700000 0.1700000 0.1700000 1.50 29.83 2613 34794 34794 7.5 96.4 RANDOM 692756.04 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT CNS library FLAT MODEL 46.3296 0.392833 0.16 0.14 5.00 0.07 0.03 1.50 29.83 207 1806 24 0 1575 0.011 1.5 22.5 1.24 1.27 1.50 1.84 2.00 2.30 2.00 3.35 2.50 0.2040000 0.012 0.1780000 1.59 304 4983 6 5.7 89.6 15.6 1.50 30 1KM6 34794 34794 0 0 1 96.4 1.50 1.59 1 89.6 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Crystal structure of ODCase mutant D70AK72A complexed with OMP 1 N N 2 N N 3 N N the other half of this biological dimer can be generated by the two fold axis -x, -y, z+1/2 A ASN 23 A ASN 23 HELX_P A ARG 35 A ARG 35 1 1 13 A GLU 36 A GLU 36 HELX_P A ILE 38 A ILE 38 5 2 3 A TYR 45 A TYR 45 HELX_P A GLY 52 A GLY 52 1 3 8 A MET 53 A MET 53 HELX_P A GLY 64 A GLY 64 1 4 12 A ILE 76 A ILE 76 HELX_P A ALA 90 A ALA 90 1 5 15 A GLY 102 A GLY 102 HELX_P A GLY 117 A GLY 117 1 6 16 A HIS 128 A HIS 128 HELX_P A MET 133 A MET 133 5 7 6 A PHE 134 A PHE 134 HELX_P A GLY 150 A GLY 150 1 8 17 A ARG 160 A ARG 160 HELX_P A GLY 172 A GLY 172 1 9 13 A ASP 188 A ASP 188 HELX_P A LEU 193 A LEU 193 1 10 6 A GLY 202 A GLY 202 HELX_P A LEU 207 A LEU 207 1 11 6 A ASN 210 A ASN 210 HELX_P A ILE 222 A ILE 222 1 12 13 LYASE TIM barrel, LYASE PYRF_METTH UNP 1 1 O26232 MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETN EKICRATFKAGADAIIVHGFRGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR PERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP 1 228 1KM6 1 228 O26232 A 1 1 228 1 ASP engineered mutation ALA 70 1KM6 A O26232 UNP 70 70 1 LYS engineered mutation ALA 72 1KM6 A O26232 UNP 72 72 1 ARG engineered mutation PRO 101 1KM6 A O26232 UNP 101 101 1 ASN cloning artifact ILE 227 1KM6 A O26232 UNP 227 227 1 cloning artifact GLU 229 1KM6 A O26232 UNP 229 1 cloning artifact ASP 230 1KM6 A O26232 UNP 230 1 cloning artifact PRO 231 1KM6 A O26232 UNP 231 1 cloning artifact ALA 232 1KM6 A O26232 UNP 232 1 cloning artifact ALA 233 1KM6 A O26232 UNP 233 1 cloning artifact ASN 234 1KM6 A O26232 UNP 234 1 cloning artifact LYS 235 1KM6 A O26232 UNP 235 1 cloning artifact ALA 236 1KM6 A O26232 UNP 236 1 cloning artifact ARG 237 1KM6 A O26232 UNP 237 1 cloning artifact LYS 238 1KM6 A O26232 UNP 238 1 cloning artifact GLU 239 1KM6 A O26232 UNP 239 1 cloning artifact ALA 240 1KM6 A O26232 UNP 240 1 cloning artifact GLU 241 1KM6 A O26232 UNP 241 1 cloning artifact LEU 242 1KM6 A O26232 UNP 242 1 cloning artifact ALA 243 1KM6 A O26232 UNP 243 1 cloning artifact ALA 244 1KM6 A O26232 UNP 244 1 cloning artifact ALA 245 1KM6 A O26232 UNP 245 1 cloning artifact THR 246 1KM6 A O26232 UNP 246 1 cloning artifact ALA 247 1KM6 A O26232 UNP 247 9 parallel parallel parallel parallel parallel parallel parallel parallel A LEU 15 A LEU 15 A MET 19 A MET 19 A THR 40 A THR 40 A GLY 44 A GLY 44 A ARG 66 A ARG 66 A VAL 73 A VAL 73 A ALA 94 A ALA 94 A HIS 98 A HIS 98 A GLU 119 A GLU 119 A LEU 123 A LEU 123 A ASN 153 A ASN 153 A VAL 155 A VAL 155 A PHE 176 A PHE 176 A SER 179 A SER 179 A ALA 198 A ALA 198 A VAL 201 A VAL 201 A LEU 15 A LEU 15 A MET 19 A MET 19 BINDING SITE FOR RESIDUE OMP A 2001 A OMP 2001 Software 19 A ASP 20 A ASP 20 19 1_555 A LYS 42 A LYS 42 19 1_555 A ASP 75 A ASP 75 19 4_566 A ILE 76 A ILE 76 19 4_566 A THR 79 A THR 79 19 4_566 A MET 126 A MET 126 19 1_555 A SER 127 A SER 127 19 1_555 A PRO 180 A PRO 180 19 1_555 A GLN 185 A GLN 185 19 1_555 A GLY 202 A GLY 202 19 1_555 A ARG 203 A ARG 203 19 1_555 A HOH 3009 C HOH 19 1_555 A HOH 3011 C HOH 19 1_555 A HOH 3012 C HOH 19 1_555 A HOH 3013 C HOH 19 1_555 A HOH 3014 C HOH 19 1_555 A HOH 3015 C HOH 19 1_555 A HOH 3016 C HOH 19 1_555 A HOH 3017 C HOH 19 1_555 20 orthorhombic C 2 2 21