0.033198
0.000000
0.000000
0.000000
0.021908
0.000000
0.000000
0.000000
0.014577
0.000000
0.000000
0.000000
Chern, S.-S.
Musayev, F.N.
Amiraslanov, I.R.
Liao, Y.-D.
Liaw, Y.-C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
30.122
45.645
68.603
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
O
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
P
N
290
N
O
N
291
N
O
N
292
N
O
N
293
N
O
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
R
C
N
330
N
O
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
N
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
doub
Y
265
N
sing
Y
266
N
sing
N
267
N
sing
Y
268
N
doub
N
269
N
sing
Y
270
N
doub
N
271
N
sing
Y
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
To be Published
0353
The Structure of a Cytotoxic Ribonuclease From the Oocyte of Rana Catesbeiana (Bullfrog)
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
8
331
344
The Secondary Structure of a Pyrimidine-Guanine Sequence-Specific Ribonuclease Possessing Cytotoxic Activity From the Oocytes of Rana Catesbeiana
1996
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
283
231
244
10.1006/jmbi.1998.2082
The Solution Structure of a Cytotoxic Ribonuclease From the Oocytes of Rana catesbeiana (bullfrog)
1998
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
273
6395
6401
10.1074/jbc.273.11.6395
The Rana catesbeiana rcr gene encoding a cytotoxic ribonuclease : Tissue distribution, cloning, purification, cytotoxicity, and active residues for RNase activity
1998
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
28
4097
4104
10.1093/nar/28.21.4097
Purification and cloning of cytotoxic ribonucleases from Rana catesbeiana (bullfrog)
2000
10.2210/pdb1km8/pdb
pdb_00001km8
115
1
mirrors
IMAGE PLATE
1997-11-26
RIGAKU RAXIS IIC
YALE MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
12459.343
RIBONUCLEASE, OOCYTES
3.1.27.5
1
nat
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
95
nat
water
RC-RNASE
no
yes
(PCA)NWATFQQKHIINTPIINCNTIMDNNIYIVGGQCKRVNTFIISSATTVKAICTGVINMNVLSTTRFQLNTCTRTSI
TPRPCPYSSRTETNYICVKCENQYPVHFAGIGRCP
QNWATFQQKHIINTPIINCNTIMDNNIYIVGGQCKRVNTFIISSATTVKAICTGVINMNVLSTTRFQLNTCTRTSITPRP
CPYSSRTETNYICVKCENQYPVHFAGIGRCP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bullfrog
oocytes
Rana
sample
8400
Rana catesbeiana
1
1.89
34.98
VAPOR DIFFUSION, HANGING DROP
8.5
Ammonium phosphate, Tris hydrochloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
software
entity_poly
pdbx_struct_mod_residue
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Polymer sequence
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-09-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-11
2
0
2019-12-25
2
1
2023-08-16
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1BC4 contains the same protein
1KM9 contains the same protein
RCSB
Y
RCSB
2001-12-14
REL
REL
PO4
PHOSPHATE ION
HOH
water
1ONC
PDB ENTRY 1ONC
PDB
experimental model
PO4
501
2
PO4
PO4
501
A
TIP
601
3
HOH
HOH
601
A
TIP
602
3
HOH
HOH
602
A
TIP
603
3
HOH
HOH
603
A
TIP
604
3
HOH
HOH
604
A
TIP
605
3
HOH
HOH
605
A
TIP
606
3
HOH
HOH
606
A
TIP
607
3
HOH
HOH
607
A
TIP
609
3
HOH
HOH
609
A
TIP
610
3
HOH
HOH
610
A
TIP
611
3
HOH
HOH
611
A
TIP
612
3
HOH
HOH
612
A
TIP
613
3
HOH
HOH
613
A
TIP
614
3
HOH
HOH
614
A
TIP
615
3
HOH
HOH
615
A
TIP
617
3
HOH
HOH
617
A
TIP
618
3
HOH
HOH
618
A
TIP
619
3
HOH
HOH
619
A
TIP
620
3
HOH
HOH
620
A
TIP
621
3
HOH
HOH
621
A
TIP
622
3
HOH
HOH
622
A
TIP
623
3
HOH
HOH
623
A
TIP
624
3
HOH
HOH
624
A
TIP
626
3
HOH
HOH
626
A
TIP
627
3
HOH
HOH
627
A
TIP
628
3
HOH
HOH
628
A
TIP
629
3
HOH
HOH
629
A
TIP
630
3
HOH
HOH
630
A
TIP
632
3
HOH
HOH
632
A
TIP
634
3
HOH
HOH
634
A
TIP
636
3
HOH
HOH
636
A
TIP
637
3
HOH
HOH
637
A
TIP
638
3
HOH
HOH
638
A
TIP
639
3
HOH
HOH
639
A
TIP
640
3
HOH
HOH
640
A
TIP
641
3
HOH
HOH
641
A
TIP
642
3
HOH
HOH
642
A
TIP
643
3
HOH
HOH
643
A
TIP
644
3
HOH
HOH
644
A
TIP
647
3
HOH
HOH
647
A
TIP
649
3
HOH
HOH
649
A
TIP
651
3
HOH
HOH
651
A
TIP
654
3
HOH
HOH
654
A
TIP
655
3
HOH
HOH
655
A
TIP
659
3
HOH
HOH
659
A
TIP
660
3
HOH
HOH
660
A
TIP
668
3
HOH
HOH
668
A
TIP
674
3
HOH
HOH
674
A
TIP
676
3
HOH
HOH
676
A
TIP
686
3
HOH
HOH
686
A
TIP
687
3
HOH
HOH
687
A
TIP
692
3
HOH
HOH
692
A
TIP
693
3
HOH
HOH
693
A
TIP
695
3
HOH
HOH
695
A
TIP
697
3
HOH
HOH
697
A
TIP
699
3
HOH
HOH
699
A
TIP
700
3
HOH
HOH
700
A
TIP
702
3
HOH
HOH
702
A
TIP
703
3
HOH
HOH
703
A
TIP
724
3
HOH
HOH
724
A
TIP
731
3
HOH
HOH
731
A
TIP
733
3
HOH
HOH
733
A
TIP
739
3
HOH
HOH
739
A
TIP
756
3
HOH
HOH
756
A
TIP
772
3
HOH
HOH
772
A
TIP
790
3
HOH
HOH
790
A
TIP
808
3
HOH
HOH
808
A
TIP
811
3
HOH
HOH
811
A
TIP
814
3
HOH
HOH
814
A
TIP
815
3
HOH
HOH
815
A
TIP
822
3
HOH
HOH
822
A
TIP
823
3
HOH
HOH
823
A
TIP
836
3
HOH
HOH
836
A
TIP
860
3
HOH
HOH
860
A
TIP
862
3
HOH
HOH
862
A
TIP
863
3
HOH
HOH
863
A
TIP
911
3
HOH
HOH
911
A
TIP
915
3
HOH
HOH
915
A
TIP
916
3
HOH
HOH
916
A
TIP
942
3
HOH
HOH
942
A
TIP
949
3
HOH
HOH
949
A
TIP
950
3
HOH
HOH
950
A
TIP
951
3
HOH
HOH
951
A
TIP
952
3
HOH
HOH
952
A
TIP
954
3
HOH
HOH
954
A
TIP
955
3
HOH
HOH
955
A
TIP
956
3
HOH
HOH
956
A
TIP
957
3
HOH
HOH
957
A
TIP
958
3
HOH
HOH
958
A
TIP
959
3
HOH
HOH
959
A
TIP
963
3
HOH
HOH
963
A
TIP
964
3
HOH
HOH
964
A
TIP
965
3
HOH
HOH
965
A
TIP
968
3
HOH
HOH
968
A
TIP
969
3
HOH
HOH
969
A
TIP
970
3
HOH
HOH
970
A
PCA
1
n
1
PCA
1
A
ASN
2
n
2
ASN
2
A
TRP
3
n
3
TRP
3
A
ALA
4
n
4
ALA
4
A
THR
5
n
5
THR
5
A
PHE
6
n
6
PHE
6
A
GLN
7
n
7
GLN
7
A
GLN
8
n
8
GLN
8
A
LYS
9
n
9
LYS
9
A
HIS
10
n
10
HIS
10
A
ILE
11
n
11
ILE
11
A
ILE
12
n
12
ILE
12
A
ASN
13
n
13
ASN
13
A
THR
14
n
14
THR
14
A
PRO
15
n
15
PRO
15
A
ILE
16
n
16
ILE
16
A
ILE
17
n
17
ILE
17
A
ASN
18
n
18
ASN
18
A
CYS
19
n
19
CYS
19
A
ASN
20
n
20
ASN
20
A
THR
21
n
21
THR
21
A
ILE
22
n
22
ILE
22
A
MET
23
n
23
MET
23
A
ASP
24
n
24
ASP
24
A
ASN
25
n
25
ASN
25
A
ASN
26
n
26
ASN
26
A
ILE
27
n
27
ILE
27
A
TYR
28
n
28
TYR
28
A
ILE
29
n
29
ILE
29
A
VAL
30
n
30
VAL
30
A
GLY
31
n
31
GLY
31
A
GLY
32
n
32
GLY
32
A
GLN
33
n
33
GLN
33
A
CYS
34
n
34
CYS
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
ARG
36
A
VAL
37
n
37
VAL
37
A
ASN
38
n
38
ASN
38
A
THR
39
n
39
THR
39
A
PHE
40
n
40
PHE
40
A
ILE
41
n
41
ILE
41
A
ILE
42
n
42
ILE
42
A
SER
43
n
43
SER
43
A
SER
44
n
44
SER
44
A
ALA
45
n
45
ALA
45
A
THR
46
n
46
THR
46
A
THR
47
n
47
THR
47
A
VAL
48
n
48
VAL
48
A
LYS
49
n
49
LYS
49
A
ALA
50
n
50
ALA
50
A
ILE
51
n
51
ILE
51
A
CYS
52
n
52
CYS
52
A
THR
53
n
53
THR
53
A
GLY
54
n
54
GLY
54
A
VAL
55
n
55
VAL
55
A
ILE
56
n
56
ILE
56
A
ASN
57
n
57
ASN
57
A
MET
58
n
58
MET
58
A
ASN
59
n
59
ASN
59
A
VAL
60
n
60
VAL
60
A
LEU
61
n
61
LEU
61
A
SER
62
n
62
SER
62
A
THR
63
n
63
THR
63
A
THR
64
n
64
THR
64
A
ARG
65
n
65
ARG
65
A
PHE
66
n
66
PHE
66
A
GLN
67
n
67
GLN
67
A
LEU
68
n
68
LEU
68
A
ASN
69
n
69
ASN
69
A
THR
70
n
70
THR
70
A
CYS
71
n
71
CYS
71
A
THR
72
n
72
THR
72
A
ARG
73
n
73
ARG
73
A
THR
74
n
74
THR
74
A
SER
75
n
75
SER
75
A
ILE
76
n
76
ILE
76
A
THR
77
n
77
THR
77
A
PRO
78
n
78
PRO
78
A
ARG
79
n
79
ARG
79
A
PRO
80
n
80
PRO
80
A
CYS
81
n
81
CYS
81
A
PRO
82
n
82
PRO
82
A
TYR
83
n
83
TYR
83
A
SER
84
n
84
SER
84
A
SER
85
n
85
SER
85
A
ARG
86
n
86
ARG
86
A
THR
87
n
87
THR
87
A
GLU
88
n
88
GLU
88
A
THR
89
n
89
THR
89
A
ASN
90
n
90
ASN
90
A
TYR
91
n
91
TYR
91
A
ILE
92
n
92
ILE
92
A
CYS
93
n
93
CYS
93
A
VAL
94
n
94
VAL
94
A
LYS
95
n
95
LYS
95
A
CYS
96
n
96
CYS
96
A
GLU
97
n
97
GLU
97
A
ASN
98
n
98
ASN
98
A
GLN
99
n
99
GLN
99
A
TYR
100
n
100
TYR
100
A
PRO
101
n
101
PRO
101
A
VAL
102
n
102
VAL
102
A
HIS
103
n
103
HIS
103
A
PHE
104
n
104
PHE
104
A
ALA
105
n
105
ALA
105
A
GLY
106
n
106
GLY
106
A
ILE
107
n
107
ILE
107
A
GLY
108
n
108
GLY
108
A
ARG
109
n
109
ARG
109
A
CYS
110
n
110
CYS
110
A
PRO
111
n
111
PRO
111
A
author_defined_assembly
1
monomeric
A
PCA
1
PYROGLUTAMIC ACID
A
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
12
A
N
ILE
12
A
O
ILE
41
A
O
ILE
41
A
N
PHE
40
A
N
PHE
40
A
O
ASN
69
A
O
ASN
69
A
N
LEU
68
A
N
LEU
68
A
O
GLU
88
A
O
GLU
88
A
N
VAL
30
A
N
VAL
30
A
O
GLN
33
A
O
GLN
33
A
N
VAL
60
A
N
VAL
60
A
O
VAL
94
A
O
VAL
94
A
N
CYS
93
A
N
CYS
93
A
O
GLY
106
A
O
GLY
106
1
A
CG
ARG
36
A
CG
ARG
36
1
Y
1
A
CD
ARG
36
A
CD
ARG
36
1
Y
1
A
NE
ARG
36
A
NE
ARG
36
1
Y
1
A
CZ
ARG
36
A
CZ
ARG
36
1
Y
1
A
NH1
ARG
36
A
NH1
ARG
36
1
Y
1
A
NH2
ARG
36
A
NH2
ARG
36
1
Y
1
A
PCA
1
14.82
1
A
ASN
57
-164.30
89.95
protein_rep.param
protein.top
carbohydrate.param
carbohydrate.top
water_rep.param
water.top
ion.param
ion.top
pca.par
pca.top
65.31
22.13
10.46
3.45
0.00
0.00
1.07
0.00
-4.52
0.205
0.008
0.174
0.177
0.177
1.90
25.14
634
7884
7555
8.4
95.8
1.00
1.00
RANDOM
1
Overall
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1ONC
Engh & Huber
CNS bulk solvent model used
43.7407
0.334872
0.22
0.18
5.00
0.15
0.08
1.90
1.90
25.14
95
962
5
0
862
0.005
1.6
25.3
1.16
0.259
0.020
0.185
1.99
84
754
948
838
8.9
88.4
0.208
0.021
0.164
2.09
64
848
968
912
6.6
94.2
0.199
0.023
0.187
2.22
73
851
966
924
7.5
95.6
0.237
0.022
0.181
2.39
71
856
965
927
7.4
96.1
0.27
0.021
0.199
2.63
91
868
980
959
9.3
97.8
0.253
0.022
0.195
3.01
82
893
999
975
8.2
97.5
0.165
0.018
0.158
3.80
81
911
1002
992
8.1
99.0
0.165
0.017
0.162
25.14
88
940
1059
1028
8.3
97.1
12.9
1.90
25.14
1KM8
15
0
23
0
35
0
7650
7650
528021.47
0.950000
0.0
0.0
0.042
1
12.2
6.24
96.9
0.138
1.90
1.93
10.89
324
3.7
88.3
refinement
Axel T. Brunger
axel.brunger@yale.edu
1998
Fortran
CNS
package
1.0
data scaling
SCALEPACK
phasing
CNS
The Structure of a Cytotoxic Ribonuclease From the Oocyte of Rana Catesbeiana (Bullfrog)
1
N
N
2
N
N
3
N
N
A
ASN
2
A
ASN
2
HELX_P
A
HIS
10
A
HIS
10
1
1
9
A
ASN
18
A
ASN
18
HELX_P
A
MET
23
A
MET
23
1
2
6
A
ASN
25
A
ASN
25
HELX_P
A
ILE
27
A
ILE
27
5
3
3
A
SER
44
A
SER
44
HELX_P
A
ALA
50
A
ALA
50
1
4
7
A
ILE
51
A
ILE
51
HELX_P
A
THR
53
A
THR
53
5
5
3
disulf
2.026
A
CYS
19
A
SG
CYS
19
1_555
A
CYS
71
A
SG
CYS
71
1_555
disulf
2.030
A
CYS
34
A
SG
CYS
34
1_555
A
CYS
81
A
SG
CYS
81
1_555
disulf
2.028
A
CYS
52
A
SG
CYS
52
1_555
A
CYS
96
A
SG
CYS
96
1_555
disulf
2.027
A
CYS
93
A
SG
CYS
93
1_555
A
CYS
110
A
SG
CYS
110
1_555
covale
1.460
both
A
PCA
1
A
C
PCA
1
1_555
A
ASN
2
A
N
ASN
2
1_555
HYDROLASE
RC-RNase, HYDROLASE
A
ARG
79
A
ARG
79
1
A
PRO
80
A
PRO
80
-0.18
RNPO_RANCA
UNP
1
1
P11916
QNWATFQQKHIINTPIINCNTIMDNNIYIVGGQCKRVNTFIISSATTVKAICTGVINMNVLSTTRFQLNTCTRTSITPRP
CPYSSRTETNYICVKCENQYPVHFAGIGRCP
1
111
1KM8
1
111
P11916
A
1
1
111
4
2
3
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
11
A
ILE
11
A
ILE
12
A
ILE
12
A
VAL
37
A
VAL
37
A
ILE
42
A
ILE
42
A
PHE
66
A
PHE
66
A
ARG
73
A
ARG
73
A
TYR
83
A
TYR
83
A
ASN
90
A
ASN
90
A
ILE
29
A
ILE
29
A
VAL
30
A
VAL
30
A
GLN
33
A
GLN
33
A
CYS
34
A
CYS
34
A
ASN
57
A
ASN
57
A
LEU
61
A
LEU
61
A
ILE
92
A
ILE
92
A
GLU
97
A
GLU
97
A
TYR
100
A
TYR
100
A
ILE
107
A
ILE
107
BINDING SITE FOR RESIDUE PO4 A 501
A
PO4
501
Software
5
A
PCA
1
A
PCA
1
5
1_555
A
LYS
9
A
LYS
9
5
1_555
A
HIS
10
A
HIS
10
5
1_555
A
HIS
103
A
HIS
103
5
1_555
A
PHE
104
A
PHE
104
5
1_555
19
P 21 21 21