0.022222
0.000000
0.009699
0.000000
0.009183
0.000000
0.000000
0.000000
0.019519
0.00000
0.00000
0.00000
Faham, S.
Bowie, J.U.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
113.58
90.00
45.000
108.900
55.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-glucopyranose
beta-D-glucose; D-glucose; glucose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C20 H28 O
284.436
RETINAL
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C27 H56
380.734
2,10,23-TRIMETHYL-TETRACOSANE
LIPID FRAGMENT
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
R
C
N
78
N
C
N
79
R
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
S
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
S
N
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
C
N
352
R
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
C
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
R
C
N
430
N
O
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
N
N
443
S
C
N
444
N
C
N
445
N
O
N
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
N
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
N
N
470
S
C
N
471
N
C
N
472
N
O
N
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
N
480
N
O
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
N
N
494
S
C
N
495
N
C
N
496
N
O
N
497
N
C
N
498
N
C
N
499
N
C
N
500
N
O
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
Y
238
N
doub
Y
239
N
sing
Y
240
N
sing
N
241
N
sing
Y
242
N
doub
N
243
N
sing
Y
244
N
doub
N
245
N
sing
Y
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
E
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
E
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
E
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
E
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
Y
438
N
doub
Y
439
N
sing
Y
440
N
sing
N
441
N
sing
Y
442
N
doub
Y
443
N
sing
Y
444
N
sing
N
445
N
sing
Y
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
doub
N
450
N
sing
Y
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
doub
N
473
N
sing
Y
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
316
1
6
10.1006/jmbi.2001.5295
11829498
Bicelle crystallization: a new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure.
2002
10.2210/pdb1kme/pdb
pdb_00001kme
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
CCD
2001-04-17
ADSC QUANTUM 4
MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
X8C
NSLS
0.9795
SYNCHROTRON
NSLS BEAMLINE X8C
25301.916
Bacteriorhodopsin
Residues 14-244
2
nat
polymer
284.436
RETINAL
2
syn
non-polymer
380.734
2,10,23-TRIMETHYL-TETRACOSANE
2
syn
non-polymer
180.156
beta-D-glucopyranose
2
man
non-polymer
18.015
water
122
nat
water
BR
no
no
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Halobacterium
sample
2242
Halobacterium salinarum
1
2.48
50.40
VAPOR DIFFUSION, HANGING DROP, Bicelle Method
3.5
sodium phosphate, DMPC, Chapso, pH 3.5, VAPOR DIFFUSION, HANGING DROP, Bicelle Method, temperature 310.0K
310.0
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2002-02-13
1
1
2008-04-27
1
2
2011-07-13
1
3
2020-07-29
1
4
2023-08-16
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpb
b-D-glucopyranose
b-D-Glcp
Glc
HETEROGEN
The identification of the lipid fragment as SQU is
simply a guess.
RCSB
Y
RCSB
2001-12-14
REL
RET
RETINAL
SQU
2,10,23-TRIMETHYL-TETRACOSANE
BGC
beta-D-glucopyranose
HOH
water
1C3W
PDB entry 1C3W
PDB
experimental model
RET
301
2
RET
RET
301
A
SQU
401
3
SQU
SQU
401
A
SQU
402
3
SQU
SQU
402
A
BGC
501
4
BGC
BGC
501
B
BGC
502
4
BGC
BGC
502
B
RET
302
2
RET
RET
302
B
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
414
5
HOH
HOH
414
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
426
5
HOH
HOH
426
A
HOH
427
5
HOH
HOH
427
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
436
5
HOH
HOH
436
A
HOH
437
5
HOH
HOH
437
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
446
5
HOH
HOH
446
A
HOH
447
5
HOH
HOH
447
A
HOH
448
5
HOH
HOH
448
A
HOH
449
5
HOH
HOH
449
A
HOH
450
5
HOH
HOH
450
A
HOH
451
5
HOH
HOH
451
A
HOH
452
5
HOH
HOH
452
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
503
5
HOH
HOH
503
B
HOH
504
5
HOH
HOH
504
B
HOH
505
5
HOH
HOH
505
B
HOH
506
5
HOH
HOH
506
B
HOH
507
5
HOH
HOH
507
B
HOH
508
5
HOH
HOH
508
B
HOH
509
5
HOH
HOH
509
B
HOH
510
5
HOH
HOH
510
B
HOH
511
5
HOH
HOH
511
B
HOH
512
5
HOH
HOH
512
B
HOH
513
5
HOH
HOH
513
B
HOH
514
5
HOH
HOH
514
B
HOH
515
5
HOH
HOH
515
B
HOH
516
5
HOH
HOH
516
B
HOH
517
5
HOH
HOH
517
B
HOH
518
5
HOH
HOH
518
B
HOH
519
5
HOH
HOH
519
B
HOH
520
5
HOH
HOH
520
B
HOH
521
5
HOH
HOH
521
B
HOH
522
5
HOH
HOH
522
B
HOH
523
5
HOH
HOH
523
B
HOH
524
5
HOH
HOH
524
B
HOH
525
5
HOH
HOH
525
B
HOH
526
5
HOH
HOH
526
B
HOH
527
5
HOH
HOH
527
B
HOH
528
5
HOH
HOH
528
B
HOH
529
5
HOH
HOH
529
B
HOH
530
5
HOH
HOH
530
B
HOH
531
5
HOH
HOH
531
B
HOH
532
5
HOH
HOH
532
B
HOH
533
5
HOH
HOH
533
B
HOH
534
5
HOH
HOH
534
B
HOH
535
5
HOH
HOH
535
B
HOH
536
5
HOH
HOH
536
B
HOH
537
5
HOH
HOH
537
B
HOH
538
5
HOH
HOH
538
B
HOH
539
5
HOH
HOH
539
B
HOH
540
5
HOH
HOH
540
B
HOH
541
5
HOH
HOH
541
B
HOH
542
5
HOH
HOH
542
B
HOH
543
5
HOH
HOH
543
B
HOH
544
5
HOH
HOH
544
B
HOH
545
5
HOH
HOH
545
B
HOH
546
5
HOH
HOH
546
B
HOH
547
5
HOH
HOH
547
B
HOH
548
5
HOH
HOH
548
B
HOH
549
5
HOH
HOH
549
B
HOH
550
5
HOH
HOH
550
B
HOH
551
5
HOH
HOH
551
B
HOH
552
5
HOH
HOH
552
B
HOH
553
5
HOH
HOH
553
B
HOH
554
5
HOH
HOH
554
B
HOH
555
5
HOH
HOH
555
B
HOH
556
5
HOH
HOH
556
B
HOH
557
5
HOH
HOH
557
B
HOH
558
5
HOH
HOH
558
B
HOH
559
5
HOH
HOH
559
B
HOH
560
5
HOH
HOH
560
B
HOH
561
5
HOH
HOH
561
B
HOH
562
5
HOH
HOH
562
B
HOH
563
5
HOH
HOH
563
B
HOH
564
5
HOH
HOH
564
B
HOH
565
5
HOH
HOH
565
B
HOH
566
5
HOH
HOH
566
B
HOH
567
5
HOH
HOH
567
B
HOH
568
5
HOH
HOH
568
B
HOH
569
5
HOH
HOH
569
B
HOH
570
5
HOH
HOH
570
B
HOH
571
5
HOH
HOH
571
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
THR
5
n
5
THR
5
A
GLY
6
n
6
GLY
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
TRP
10
n
10
TRP
10
A
ILE
11
n
11
ILE
11
A
TRP
12
n
12
TRP
12
A
LEU
13
n
13
LEU
13
A
ALA
14
n
14
ALA
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
MET
20
n
20
MET
20
A
GLY
21
n
21
GLY
21
A
LEU
22
n
22
LEU
22
A
GLY
23
n
23
GLY
23
A
THR
24
n
24
THR
24
A
LEU
25
n
25
LEU
25
A
TYR
26
n
26
TYR
26
A
PHE
27
n
27
PHE
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
LYS
30
n
30
LYS
30
A
GLY
31
n
31
GLY
31
A
MET
32
n
32
MET
32
A
GLY
33
n
33
GLY
33
A
VAL
34
n
34
VAL
34
A
SER
35
n
35
SER
35
A
ASP
36
n
36
ASP
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
ALA
39
n
39
ALA
39
A
LYS
40
n
40
LYS
40
A
LYS
41
n
41
LYS
41
A
PHE
42
n
42
PHE
42
A
TYR
43
n
43
TYR
43
A
ALA
44
n
44
ALA
44
A
ILE
45
n
45
ILE
45
A
THR
46
n
46
THR
46
A
THR
47
n
47
THR
47
A
LEU
48
n
48
LEU
48
A
VAL
49
n
49
VAL
49
A
PRO
50
n
50
PRO
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
ALA
53
n
53
ALA
53
A
PHE
54
n
54
PHE
54
A
THR
55
n
55
THR
55
A
MET
56
n
56
MET
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
SER
59
n
59
SER
59
A
MET
60
n
60
MET
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
GLY
63
n
63
GLY
63
A
TYR
64
n
64
TYR
64
A
GLY
65
n
65
GLY
65
A
LEU
66
n
66
LEU
66
A
THR
67
n
67
THR
67
A
MET
68
n
68
MET
68
A
VAL
69
n
69
VAL
69
A
PRO
70
n
70
PRO
70
A
PHE
71
n
71
PHE
71
A
GLY
72
n
72
GLY
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
GLN
75
n
75
GLN
75
A
ASN
76
n
76
ASN
76
A
PRO
77
n
77
PRO
77
A
ILE
78
n
78
ILE
78
A
TYR
79
n
79
TYR
79
A
TRP
80
n
80
TRP
80
A
ALA
81
n
81
ALA
81
A
ARG
82
n
82
ARG
82
A
TYR
83
n
83
TYR
83
A
ALA
84
n
84
ALA
84
A
ASP
85
n
85
ASP
85
A
TRP
86
n
86
TRP
86
A
LEU
87
n
87
LEU
87
A
PHE
88
n
88
PHE
88
A
THR
89
n
89
THR
89
A
THR
90
n
90
THR
90
A
PRO
91
n
91
PRO
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
ASP
96
n
96
ASP
96
A
LEU
97
n
97
LEU
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
LEU
100
n
100
LEU
100
A
VAL
101
n
101
VAL
101
A
ASP
102
n
102
ASP
102
A
ALA
103
n
103
ALA
103
A
ASP
104
n
104
ASP
104
A
GLN
105
n
105
GLN
105
A
GLY
106
n
106
GLY
106
A
THR
107
n
107
THR
107
A
ILE
108
n
108
ILE
108
A
LEU
109
n
109
LEU
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
GLY
113
n
113
GLY
113
A
ALA
114
n
114
ALA
114
A
ASP
115
n
115
ASP
115
A
GLY
116
n
116
GLY
116
A
ILE
117
n
117
ILE
117
A
MET
118
n
118
MET
118
A
ILE
119
n
119
ILE
119
A
GLY
120
n
120
GLY
120
A
THR
121
n
121
THR
121
A
GLY
122
n
122
GLY
122
A
LEU
123
n
123
LEU
123
A
VAL
124
n
124
VAL
124
A
GLY
125
n
125
GLY
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
THR
128
n
128
THR
128
A
LYS
129
n
129
LYS
129
A
VAL
130
n
130
VAL
130
A
TYR
131
n
131
TYR
131
A
SER
132
n
132
SER
132
A
TYR
133
n
133
TYR
133
A
ARG
134
n
134
ARG
134
A
PHE
135
n
135
PHE
135
A
VAL
136
n
136
VAL
136
A
TRP
137
n
137
TRP
137
A
TRP
138
n
138
TRP
138
A
ALA
139
n
139
ALA
139
A
ILE
140
n
140
ILE
140
A
SER
141
n
141
SER
141
A
THR
142
n
142
THR
142
A
ALA
143
n
143
ALA
143
A
ALA
144
n
144
ALA
144
A
MET
145
n
145
MET
145
A
LEU
146
n
146
LEU
146
A
TYR
147
n
147
TYR
147
A
ILE
148
n
148
ILE
148
A
LEU
149
n
149
LEU
149
A
TYR
150
n
150
TYR
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
PHE
153
n
153
PHE
153
A
PHE
154
n
154
PHE
154
A
GLY
155
n
155
GLY
155
A
PHE
156
n
156
PHE
156
A
THR
157
n
157
THR
157
A
SER
158
n
158
SER
158
A
LYS
159
n
159
LYS
159
A
ALA
160
n
160
ALA
160
A
GLU
161
n
161
GLU
161
A
SER
162
n
162
SER
162
A
MET
163
n
163
MET
163
A
ARG
164
n
164
ARG
164
A
PRO
165
n
165
PRO
165
A
GLU
166
n
166
GLU
166
A
VAL
167
n
167
VAL
167
A
ALA
168
n
168
ALA
168
A
SER
169
n
169
SER
169
A
THR
170
n
170
THR
170
A
PHE
171
n
171
PHE
171
A
LYS
172
n
172
LYS
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
ARG
175
n
175
ARG
175
A
ASN
176
n
176
ASN
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
VAL
179
n
179
VAL
179
A
VAL
180
n
180
VAL
180
A
LEU
181
n
181
LEU
181
A
TRP
182
n
182
TRP
182
A
SER
183
n
183
SER
183
A
ALA
184
n
184
ALA
184
A
TYR
185
n
185
TYR
185
A
PRO
186
n
186
PRO
186
A
VAL
187
n
187
VAL
187
A
VAL
188
n
188
VAL
188
A
TRP
189
n
189
TRP
189
A
LEU
190
n
190
LEU
190
A
ILE
191
n
191
ILE
191
A
GLY
192
n
192
GLY
192
A
SER
193
n
193
SER
193
A
GLU
194
n
194
GLU
194
A
GLY
195
n
195
GLY
195
A
ALA
196
n
196
ALA
196
A
GLY
197
n
197
GLY
197
A
ILE
198
n
198
ILE
198
A
VAL
199
n
199
VAL
199
A
PRO
200
n
200
PRO
200
A
LEU
201
n
201
LEU
201
A
ASN
202
n
202
ASN
202
A
ILE
203
n
203
ILE
203
A
GLU
204
n
204
GLU
204
A
THR
205
n
205
THR
205
A
LEU
206
n
206
LEU
206
A
LEU
207
n
207
LEU
207
A
PHE
208
n
208
PHE
208
A
MET
209
n
209
MET
209
A
VAL
210
n
210
VAL
210
A
LEU
211
n
211
LEU
211
A
ASP
212
n
212
ASP
212
A
VAL
213
n
213
VAL
213
A
SER
214
n
214
SER
214
A
ALA
215
n
215
ALA
215
A
LYS
216
n
216
LYS
216
A
VAL
217
n
217
VAL
217
A
GLY
218
n
218
GLY
218
A
PHE
219
n
219
PHE
219
A
GLY
220
n
220
GLY
220
A
LEU
221
n
221
LEU
221
A
ILE
222
n
222
ILE
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
ARG
225
n
225
ARG
225
A
SER
226
n
226
SER
226
A
ARG
227
n
227
ARG
227
A
ALA
228
n
228
ALA
228
A
ILE
229
n
229
ILE
229
A
PHE
230
n
230
PHE
230
A
GLY
231
n
231
GLY
231
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
THR
5
n
5
THR
5
B
GLY
6
n
6
GLY
6
B
ARG
7
n
7
ARG
7
B
PRO
8
n
8
PRO
8
B
GLU
9
n
9
GLU
9
B
TRP
10
n
10
TRP
10
B
ILE
11
n
11
ILE
11
B
TRP
12
n
12
TRP
12
B
LEU
13
n
13
LEU
13
B
ALA
14
n
14
ALA
14
B
LEU
15
n
15
LEU
15
B
GLY
16
n
16
GLY
16
B
THR
17
n
17
THR
17
B
ALA
18
n
18
ALA
18
B
LEU
19
n
19
LEU
19
B
MET
20
n
20
MET
20
B
GLY
21
n
21
GLY
21
B
LEU
22
n
22
LEU
22
B
GLY
23
n
23
GLY
23
B
THR
24
n
24
THR
24
B
LEU
25
n
25
LEU
25
B
TYR
26
n
26
TYR
26
B
PHE
27
n
27
PHE
27
B
LEU
28
n
28
LEU
28
B
VAL
29
n
29
VAL
29
B
LYS
30
n
30
LYS
30
B
GLY
31
n
31
GLY
31
B
MET
32
n
32
MET
32
B
GLY
33
n
33
GLY
33
B
VAL
34
n
34
VAL
34
B
SER
35
n
35
SER
35
B
ASP
36
n
36
ASP
36
B
PRO
37
n
37
PRO
37
B
ASP
38
n
38
ASP
38
B
ALA
39
n
39
ALA
39
B
LYS
40
n
40
LYS
40
B
LYS
41
n
41
LYS
41
B
PHE
42
n
42
PHE
42
B
TYR
43
n
43
TYR
43
B
ALA
44
n
44
ALA
44
B
ILE
45
n
45
ILE
45
B
THR
46
n
46
THR
46
B
THR
47
n
47
THR
47
B
LEU
48
n
48
LEU
48
B
VAL
49
n
49
VAL
49
B
PRO
50
n
50
PRO
50
B
ALA
51
n
51
ALA
51
B
ILE
52
n
52
ILE
52
B
ALA
53
n
53
ALA
53
B
PHE
54
n
54
PHE
54
B
THR
55
n
55
THR
55
B
MET
56
n
56
MET
56
B
TYR
57
n
57
TYR
57
B
LEU
58
n
58
LEU
58
B
SER
59
n
59
SER
59
B
MET
60
n
60
MET
60
B
LEU
61
n
61
LEU
61
B
LEU
62
n
62
LEU
62
B
GLY
63
n
63
GLY
63
B
TYR
64
n
64
TYR
64
B
GLY
65
n
65
GLY
65
B
LEU
66
n
66
LEU
66
B
THR
67
n
67
THR
67
B
MET
68
n
68
MET
68
B
VAL
69
n
69
VAL
69
B
PRO
70
n
70
PRO
70
B
PHE
71
n
71
PHE
71
B
GLY
72
n
72
GLY
72
B
GLY
73
n
73
GLY
73
B
GLU
74
n
74
GLU
74
B
GLN
75
n
75
GLN
75
B
ASN
76
n
76
ASN
76
B
PRO
77
n
77
PRO
77
B
ILE
78
n
78
ILE
78
B
TYR
79
n
79
TYR
79
B
TRP
80
n
80
TRP
80
B
ALA
81
n
81
ALA
81
B
ARG
82
n
82
ARG
82
B
TYR
83
n
83
TYR
83
B
ALA
84
n
84
ALA
84
B
ASP
85
n
85
ASP
85
B
TRP
86
n
86
TRP
86
B
LEU
87
n
87
LEU
87
B
PHE
88
n
88
PHE
88
B
THR
89
n
89
THR
89
B
THR
90
n
90
THR
90
B
PRO
91
n
91
PRO
91
B
LEU
92
n
92
LEU
92
B
LEU
93
n
93
LEU
93
B
LEU
94
n
94
LEU
94
B
LEU
95
n
95
LEU
95
B
ASP
96
n
96
ASP
96
B
LEU
97
n
97
LEU
97
B
ALA
98
n
98
ALA
98
B
LEU
99
n
99
LEU
99
B
LEU
100
n
100
LEU
100
B
VAL
101
n
101
VAL
101
B
ASP
102
n
102
ASP
102
B
ALA
103
n
103
ALA
103
B
ASP
104
n
104
ASP
104
B
GLN
105
n
105
GLN
105
B
GLY
106
n
106
GLY
106
B
THR
107
n
107
THR
107
B
ILE
108
n
108
ILE
108
B
LEU
109
n
109
LEU
109
B
ALA
110
n
110
ALA
110
B
LEU
111
n
111
LEU
111
B
VAL
112
n
112
VAL
112
B
GLY
113
n
113
GLY
113
B
ALA
114
n
114
ALA
114
B
ASP
115
n
115
ASP
115
B
GLY
116
n
116
GLY
116
B
ILE
117
n
117
ILE
117
B
MET
118
n
118
MET
118
B
ILE
119
n
119
ILE
119
B
GLY
120
n
120
GLY
120
B
THR
121
n
121
THR
121
B
GLY
122
n
122
GLY
122
B
LEU
123
n
123
LEU
123
B
VAL
124
n
124
VAL
124
B
GLY
125
n
125
GLY
125
B
ALA
126
n
126
ALA
126
B
LEU
127
n
127
LEU
127
B
THR
128
n
128
THR
128
B
LYS
129
n
129
LYS
129
B
VAL
130
n
130
VAL
130
B
TYR
131
n
131
TYR
131
B
SER
132
n
132
SER
132
B
TYR
133
n
133
TYR
133
B
ARG
134
n
134
ARG
134
B
PHE
135
n
135
PHE
135
B
VAL
136
n
136
VAL
136
B
TRP
137
n
137
TRP
137
B
TRP
138
n
138
TRP
138
B
ALA
139
n
139
ALA
139
B
ILE
140
n
140
ILE
140
B
SER
141
n
141
SER
141
B
THR
142
n
142
THR
142
B
ALA
143
n
143
ALA
143
B
ALA
144
n
144
ALA
144
B
MET
145
n
145
MET
145
B
LEU
146
n
146
LEU
146
B
TYR
147
n
147
TYR
147
B
ILE
148
n
148
ILE
148
B
LEU
149
n
149
LEU
149
B
TYR
150
n
150
TYR
150
B
VAL
151
n
151
VAL
151
B
LEU
152
n
152
LEU
152
B
PHE
153
n
153
PHE
153
B
PHE
154
n
154
PHE
154
B
GLY
155
n
155
GLY
155
B
PHE
156
n
156
PHE
156
B
THR
157
n
157
THR
157
B
SER
158
n
158
SER
158
B
LYS
159
n
159
LYS
159
B
ALA
160
n
160
ALA
160
B
GLU
161
n
161
GLU
161
B
SER
162
n
162
SER
162
B
MET
163
n
163
MET
163
B
ARG
164
n
164
ARG
164
B
PRO
165
n
165
PRO
165
B
GLU
166
n
166
GLU
166
B
VAL
167
n
167
VAL
167
B
ALA
168
n
168
ALA
168
B
SER
169
n
169
SER
169
B
THR
170
n
170
THR
170
B
PHE
171
n
171
PHE
171
B
LYS
172
n
172
LYS
172
B
VAL
173
n
173
VAL
173
B
LEU
174
n
174
LEU
174
B
ARG
175
n
175
ARG
175
B
ASN
176
n
176
ASN
176
B
VAL
177
n
177
VAL
177
B
THR
178
n
178
THR
178
B
VAL
179
n
179
VAL
179
B
VAL
180
n
180
VAL
180
B
LEU
181
n
181
LEU
181
B
TRP
182
n
182
TRP
182
B
SER
183
n
183
SER
183
B
ALA
184
n
184
ALA
184
B
TYR
185
n
185
TYR
185
B
PRO
186
n
186
PRO
186
B
VAL
187
n
187
VAL
187
B
VAL
188
n
188
VAL
188
B
TRP
189
n
189
TRP
189
B
LEU
190
n
190
LEU
190
B
ILE
191
n
191
ILE
191
B
GLY
192
n
192
GLY
192
B
SER
193
n
193
SER
193
B
GLU
194
n
194
GLU
194
B
GLY
195
n
195
GLY
195
B
ALA
196
n
196
ALA
196
B
GLY
197
n
197
GLY
197
B
ILE
198
n
198
ILE
198
B
VAL
199
n
199
VAL
199
B
PRO
200
n
200
PRO
200
B
LEU
201
n
201
LEU
201
B
ASN
202
n
202
ASN
202
B
ILE
203
n
203
ILE
203
B
GLU
204
n
204
GLU
204
B
THR
205
n
205
THR
205
B
LEU
206
n
206
LEU
206
B
LEU
207
n
207
LEU
207
B
PHE
208
n
208
PHE
208
B
MET
209
n
209
MET
209
B
VAL
210
n
210
VAL
210
B
LEU
211
n
211
LEU
211
B
ASP
212
n
212
ASP
212
B
VAL
213
n
213
VAL
213
B
SER
214
n
214
SER
214
B
ALA
215
n
215
ALA
215
B
LYS
216
n
216
LYS
216
B
VAL
217
n
217
VAL
217
B
GLY
218
n
218
GLY
218
B
PHE
219
n
219
PHE
219
B
GLY
220
n
220
GLY
220
B
LEU
221
n
221
LEU
221
B
ILE
222
n
222
ILE
222
B
LEU
223
n
223
LEU
223
B
LEU
224
n
224
LEU
224
B
ARG
225
n
225
ARG
225
B
SER
226
n
226
SER
226
B
ARG
227
n
227
ARG
227
B
ALA
228
n
228
ALA
228
B
ILE
229
n
229
ILE
229
B
PHE
230
n
230
PHE
230
B
GLY
231
n
231
GLY
231
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
69
A
N
VAL
69
A
O
ASN
76
A
O
ASN
76
B
N
VAL
69
B
N
VAL
69
B
O
ASN
76
B
O
ASN
76
1
A
C3
SQU
401
D
C3
SQU
1
1
N
1
A
C13
SQU
401
D
C13
SQU
1
1
N
1
A
C26
SQU
401
D
C26
SQU
1
1
N
1
A
C27
SQU
401
D
C27
SQU
1
1
N
1
A
C28
SQU
401
D
C28
SQU
1
1
N
1
A
C29
SQU
401
D
C29
SQU
1
1
N
1
A
C30
SQU
401
D
C30
SQU
1
1
N
1
A
C3
SQU
402
E
C3
SQU
1
1
N
1
A
C13
SQU
402
E
C13
SQU
1
1
N
1
A
C26
SQU
402
E
C26
SQU
1
1
N
1
A
C27
SQU
402
E
C27
SQU
1
1
N
1
A
C28
SQU
402
E
C28
SQU
1
1
N
1
A
C29
SQU
402
E
C29
SQU
1
1
N
1
A
C30
SQU
402
E
C30
SQU
1
1
N
1
A
GLN
1
A
GLN
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
ILE
4
A
ILE
4
1
Y
1
B
GLN
1
B
GLN
1
1
Y
1
B
ALA
2
B
ALA
2
1
Y
1
B
GLN
3
B
GLN
3
1
Y
1
B
ILE
4
B
ILE
4
1
Y
1
A
PHE
71
177.11
156.10
1
B
PHE
71
177.13
156.60
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
CARBOHYDRATE.PARAM
CARBOHYDRATE.TOP
RET.PAR
RET.TOP
14.8
1.10
0.00
-2.49
2.15
0.00
-3.25
0.2750000
0.007
0.2630000
0.2630000
0.2630000
2.00
41.24
1610
31440
31121
5.2
93.4
RANDOM
1159567.11
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB entry 1C3W
Engh & Huber
FLAT MODEL
114.27
0.444285
0.32
0.28
5.00
0.23
0.15
2.00
41.24
122
3740
104
0
3514
0.008
1.2
17.6
0.78
1.10
1.50
1.55
2.00
1.66
2.00
2.14
2.50
0.3080000
0.021
0.2830000
2.13
210
3701
6
5.4
71.0
5.0
2.00
50.0
1KME
31440
31440
0.0
0.0
0.1020000
1
11.2
3.3
92.8
0.2600000
2.00
2.07
3.2
62.5
phasing
AMoRE
refinement
CNS
1.1
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
2
N
N
5
N
N
5
N
N
The two molecules in the asymmetric unit are related by this rotation matrix :
( 0.99998 0.00411 -0.00372 )
( 0.00410 -0.99999 -0.00269 )
( -0.00373 0.00268 -0.99999 )
and this translation
( -22.61935 103.36683 34.80453 )
A
GLU
9
A
GLU
9
HELX_P
A
VAL
34
A
VAL
34
1
1
26
A
ASP
36
A
ASP
36
HELX_P
A
LEU
62
A
LEU
62
1
2
27
A
TRP
80
A
TRP
80
HELX_P
A
VAL
101
A
VAL
101
1
3
22
A
ASP
104
A
ASP
104
HELX_P
A
THR
128
A
THR
128
1
4
25
A
VAL
130
A
VAL
130
HELX_P
A
ALA
160
A
ALA
160
1
5
31
A
GLU
161
A
GLU
161
HELX_P
A
MET
163
A
MET
163
5
6
3
A
ARG
164
A
ARG
164
HELX_P
A
GLY
192
A
GLY
192
1
7
29
A
PRO
200
A
PRO
200
HELX_P
A
ARG
225
A
ARG
225
1
8
26
A
SER
226
A
SER
226
HELX_P
A
PHE
230
A
PHE
230
5
9
5
B
GLU
9
B
GLU
9
HELX_P
B
VAL
34
B
VAL
34
1
10
26
B
ASP
36
B
ASP
36
HELX_P
B
LEU
62
B
LEU
62
1
11
27
B
TRP
80
B
TRP
80
HELX_P
B
VAL
101
B
VAL
101
1
12
22
B
ASP
104
B
ASP
104
HELX_P
B
THR
128
B
THR
128
1
13
25
B
VAL
130
B
VAL
130
HELX_P
B
ALA
160
B
ALA
160
1
14
31
B
GLU
161
B
GLU
161
HELX_P
B
MET
163
B
MET
163
5
15
3
B
ARG
164
B
ARG
164
HELX_P
B
GLY
192
B
GLY
192
1
16
29
B
PRO
200
B
PRO
200
HELX_P
B
ARG
225
B
ARG
225
1
17
26
B
SER
226
B
SER
226
HELX_P
B
PHE
230
B
PHE
230
5
18
5
covale
1.326
one
A
LYS
216
A
NZ
LYS
216
1_555
A
RET
301
C
C15
RET
1_555
covale
1.332
one
B
LYS
216
B
NZ
LYS
216
1_555
B
RET
302
H
C15
RET
1_555
MEMBRANE PROTEIN
Membrane Protein
BACR_HALN1
UNP
1
1
P02945
MLELLPTAVEGVSQAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT
MVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLY
ILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSR
AIFGEAEAPEPSAGDGAAATSD
14
244
1KME
1
231
P02945
A
1
1
231
14
244
1KME
1
231
P02945
B
1
1
231
2
2
anti-parallel
anti-parallel
A
LEU
66
A
LEU
66
A
PHE
71
A
PHE
71
A
GLU
74
A
GLU
74
A
TYR
79
A
TYR
79
B
LEU
66
B
LEU
66
B
PHE
71
B
PHE
71
B
GLU
74
B
GLU
74
B
TYR
79
B
TYR
79
4
P 1 21 1