0.024500
-0.000001
-0.000001
0.000000
0.019455
-0.000001
0.000000
0.000000
0.012537
0.00000
0.00000
0.00000
Simister, P.C.
Banfield, M.J.
Brady, R.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
40.816
51.401
79.765
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
1077
1080
10.1107/S090744490200522X
12037323
The crystal structure of PEBP-2, a homologue of the PEBP/RKIP family.
2002
10.2210/pdb1kn3/pdb
pdb_00001kn3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirrors
CCD
2001-02-18
ADSC QUANTUM 4
MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.488
1.0
PX14.1
SRS
1.488
SYNCHROTRON
SRS BEAMLINE PX14.1
20777.602
Phosphatidylethanolamine Binding Protein-2
1
man
polymer
18.015
water
123
nat
water
mPEBP-2
no
no
MSMWTGPLSLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPVYREW
HHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPV
AGTCYQAEWDSYVPKLYKQLSGK
MSMWTGPLSLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPVYREW
HHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPV
AGTCYQAEWDSYVPKLYKQLSGK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
pebp-2
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pET-28a
1
2.01
38.87
VAPOUR DIFFUSION, HANGING DROP
8.5
30% PEG 4000, 200mM sodium acetate trihydrate, 100mM Tris.HCl, pH 8.5, VAPOUR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Advisory
Version format compliance
Data collection
Database references
Refinement description
1
0
2002-06-12
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Human Phospatidylethanolamine-binding Protein (hPEBP)
Human PEBP in complex with Cacodylate
Bovine Phospatidylethanolamine-binding Protein (bPEBP)
Antirrhinum Centroradialis (CEN) Protein
E. Coli Ybhb Protein
E. Coli Ybcl Protein
RCSB
Y
RCSB
2001-12-18
REL
REL
HOH
water
1BD9
PDB ENTRY 1BD9
PDB
experimental model
HOH
1
2
HOH
HOH
188
A
HOH
2
2
HOH
HOH
189
A
HOH
3
2
HOH
HOH
190
A
HOH
4
2
HOH
HOH
191
A
HOH
5
2
HOH
HOH
192
A
HOH
6
2
HOH
HOH
193
A
HOH
7
2
HOH
HOH
194
A
HOH
8
2
HOH
HOH
195
A
HOH
9
2
HOH
HOH
196
A
HOH
10
2
HOH
HOH
197
A
HOH
11
2
HOH
HOH
198
A
HOH
12
2
HOH
HOH
199
A
HOH
13
2
HOH
HOH
200
A
HOH
14
2
HOH
HOH
201
A
HOH
15
2
HOH
HOH
202
A
HOH
16
2
HOH
HOH
203
A
HOH
17
2
HOH
HOH
204
A
HOH
18
2
HOH
HOH
205
A
HOH
19
2
HOH
HOH
206
A
HOH
20
2
HOH
HOH
207
A
HOH
21
2
HOH
HOH
208
A
HOH
22
2
HOH
HOH
209
A
HOH
23
2
HOH
HOH
210
A
HOH
24
2
HOH
HOH
211
A
HOH
26
2
HOH
HOH
212
A
HOH
27
2
HOH
HOH
213
A
HOH
28
2
HOH
HOH
214
A
HOH
29
2
HOH
HOH
215
A
HOH
30
2
HOH
HOH
216
A
HOH
31
2
HOH
HOH
217
A
HOH
32
2
HOH
HOH
218
A
HOH
33
2
HOH
HOH
219
A
HOH
34
2
HOH
HOH
220
A
HOH
35
2
HOH
HOH
221
A
HOH
36
2
HOH
HOH
222
A
HOH
37
2
HOH
HOH
223
A
HOH
38
2
HOH
HOH
224
A
HOH
39
2
HOH
HOH
225
A
HOH
40
2
HOH
HOH
226
A
HOH
41
2
HOH
HOH
227
A
HOH
42
2
HOH
HOH
228
A
HOH
43
2
HOH
HOH
229
A
HOH
44
2
HOH
HOH
230
A
HOH
45
2
HOH
HOH
231
A
HOH
46
2
HOH
HOH
232
A
HOH
47
2
HOH
HOH
233
A
HOH
48
2
HOH
HOH
234
A
HOH
49
2
HOH
HOH
235
A
HOH
50
2
HOH
HOH
236
A
HOH
51
2
HOH
HOH
237
A
HOH
52
2
HOH
HOH
238
A
HOH
53
2
HOH
HOH
239
A
HOH
54
2
HOH
HOH
240
A
HOH
55
2
HOH
HOH
241
A
HOH
56
2
HOH
HOH
242
A
HOH
57
2
HOH
HOH
243
A
HOH
58
2
HOH
HOH
244
A
HOH
59
2
HOH
HOH
245
A
HOH
60
2
HOH
HOH
246
A
HOH
61
2
HOH
HOH
247
A
HOH
62
2
HOH
HOH
248
A
HOH
63
2
HOH
HOH
249
A
HOH
64
2
HOH
HOH
250
A
HOH
65
2
HOH
HOH
251
A
HOH
66
2
HOH
HOH
252
A
HOH
67
2
HOH
HOH
253
A
HOH
68
2
HOH
HOH
254
A
HOH
69
2
HOH
HOH
255
A
HOH
70
2
HOH
HOH
256
A
HOH
71
2
HOH
HOH
257
A
HOH
72
2
HOH
HOH
258
A
HOH
73
2
HOH
HOH
259
A
HOH
74
2
HOH
HOH
260
A
HOH
75
2
HOH
HOH
261
A
HOH
76
2
HOH
HOH
262
A
HOH
77
2
HOH
HOH
263
A
HOH
78
2
HOH
HOH
264
A
HOH
79
2
HOH
HOH
265
A
HOH
80
2
HOH
HOH
266
A
HOH
81
2
HOH
HOH
267
A
HOH
82
2
HOH
HOH
268
A
HOH
83
2
HOH
HOH
269
A
HOH
84
2
HOH
HOH
270
A
HOH
85
2
HOH
HOH
271
A
HOH
86
2
HOH
HOH
272
A
HOH
87
2
HOH
HOH
273
A
HOH
88
2
HOH
HOH
274
A
HOH
89
2
HOH
HOH
275
A
HOH
90
2
HOH
HOH
276
A
HOH
91
2
HOH
HOH
277
A
HOH
92
2
HOH
HOH
278
A
HOH
93
2
HOH
HOH
279
A
HOH
94
2
HOH
HOH
280
A
HOH
95
2
HOH
HOH
281
A
HOH
96
2
HOH
HOH
282
A
HOH
97
2
HOH
HOH
283
A
HOH
98
2
HOH
HOH
284
A
HOH
99
2
HOH
HOH
285
A
HOH
100
2
HOH
HOH
286
A
HOH
101
2
HOH
HOH
287
A
HOH
102
2
HOH
HOH
288
A
HOH
103
2
HOH
HOH
289
A
HOH
104
2
HOH
HOH
290
A
HOH
105
2
HOH
HOH
291
A
HOH
106
2
HOH
HOH
292
A
HOH
107
2
HOH
HOH
293
A
HOH
108
2
HOH
HOH
294
A
HOH
109
2
HOH
HOH
295
A
HOH
110
2
HOH
HOH
296
A
HOH
111
2
HOH
HOH
297
A
HOH
112
2
HOH
HOH
298
A
HOH
113
2
HOH
HOH
299
A
HOH
114
2
HOH
HOH
300
A
HOH
115
2
HOH
HOH
301
A
HOH
116
2
HOH
HOH
302
A
HOH
117
2
HOH
HOH
303
A
HOH
118
2
HOH
HOH
304
A
HOH
119
2
HOH
HOH
305
A
HOH
120
2
HOH
HOH
306
A
HOH
121
2
HOH
HOH
307
A
HOH
122
2
HOH
HOH
308
A
HOH
123
2
HOH
HOH
309
A
HOH
124
2
HOH
HOH
310
A
n
1
5
A
SER
6
n
2
SER
6
A
MET
7
n
3
MET
7
A
TRP
8
n
4
TRP
8
A
THR
9
n
5
THR
9
A
GLY
10
n
6
GLY
10
A
PRO
11
n
7
PRO
11
A
LEU
12
n
8
LEU
12
A
SER
13
n
9
SER
13
A
LEU
14
n
10
LEU
14
A
HIS
15
n
11
HIS
15
A
GLU
16
n
12
GLU
16
A
VAL
17
n
13
VAL
17
A
ASP
18
n
14
ASP
18
A
GLU
19
n
15
GLU
19
A
GLN
20
n
16
GLN
20
A
PRO
21
n
17
PRO
21
A
GLN
22
n
18
GLN
22
A
HIS
23
n
19
HIS
23
A
LEU
24
n
20
LEU
24
A
LEU
25
n
21
LEU
25
A
ARG
26
n
22
ARG
26
A
VAL
27
n
23
VAL
27
A
THR
28
n
24
THR
28
A
TYR
29
n
25
TYR
29
A
THR
30
n
26
THR
30
A
GLU
31
n
27
GLU
31
A
ALA
32
n
28
ALA
32
A
GLU
33
n
29
GLU
33
A
VAL
34
n
30
VAL
34
A
GLU
35
n
31
GLU
35
A
GLU
36
n
32
GLU
36
A
LEU
37
n
33
LEU
37
A
GLY
38
n
34
GLY
38
A
GLN
39
n
35
GLN
39
A
VAL
40
n
36
VAL
40
A
LEU
41
n
37
LEU
41
A
THR
42
n
38
THR
42
A
PRO
43
n
39
PRO
43
A
THR
44
n
40
THR
44
A
GLN
45
n
41
GLN
45
A
VAL
46
n
42
VAL
46
A
LYS
47
n
43
LYS
47
A
HIS
48
n
44
HIS
48
A
ARG
49
n
45
ARG
49
A
PRO
50
n
46
PRO
50
A
GLY
51
n
47
GLY
51
A
SER
52
n
48
SER
52
A
ILE
53
n
49
ILE
53
A
SER
54
n
50
SER
54
A
TRP
55
n
51
TRP
55
A
ASP
56
n
52
ASP
56
A
GLY
57
n
53
GLY
57
A
LEU
58
n
54
LEU
58
A
ASP
59
n
55
ASP
59
A
PRO
60
n
56
PRO
60
A
GLY
61
n
57
GLY
61
A
LYS
62
n
58
LYS
62
A
LEU
63
n
59
LEU
63
A
TYR
64
n
60
TYR
64
A
THR
65
n
61
THR
65
A
LEU
66
n
62
LEU
66
A
ILE
67
n
63
ILE
67
A
LEU
68
n
64
LEU
68
A
THR
69
n
65
THR
69
A
ASP
70
n
66
ASP
70
A
PRO
71
n
67
PRO
71
A
ASP
72
n
68
ASP
72
A
ALA
73
n
69
ALA
73
A
PRO
74
n
70
PRO
74
A
SER
75
n
71
SER
75
A
ARG
76
n
72
ARG
76
A
LYS
77
n
73
LYS
77
A
LYS
78
n
74
LYS
78
A
PRO
79
n
75
PRO
79
A
VAL
80
n
76
VAL
80
A
TYR
81
n
77
TYR
81
A
ARG
82
n
78
ARG
82
A
GLU
83
n
79
GLU
83
A
TRP
84
n
80
TRP
84
A
HIS
85
n
81
HIS
85
A
HIS
86
n
82
HIS
86
A
PHE
87
n
83
PHE
87
A
LEU
88
n
84
LEU
88
A
VAL
89
n
85
VAL
89
A
VAL
90
n
86
VAL
90
A
ASN
91
n
87
ASN
91
A
MET
92
n
88
MET
92
A
LYS
93
n
89
LYS
93
A
GLY
94
n
90
GLY
94
A
ASN
95
n
91
ASN
95
A
ASP
96
n
92
ASP
96
A
ILE
97
n
93
ILE
97
A
SER
98
n
94
SER
98
A
SER
99
n
95
SER
99
A
GLY
100
n
96
GLY
100
A
ASN
101
n
97
ASN
101
A
VAL
102
n
98
VAL
102
A
LEU
103
n
99
LEU
103
A
SER
104
n
100
SER
104
A
ASP
105
n
101
ASP
105
A
TYR
106
n
102
TYR
106
A
VAL
107
n
103
VAL
107
A
GLY
108
n
104
GLY
108
A
SER
109
n
105
SER
109
A
GLY
110
n
106
GLY
110
A
PRO
111
n
107
PRO
111
A
PRO
112
n
108
PRO
112
A
LYS
113
n
109
LYS
113
A
GLY
114
n
110
GLY
114
A
THR
115
n
111
THR
115
A
GLY
116
n
112
GLY
116
A
LEU
117
n
113
LEU
117
A
HIS
118
n
114
HIS
118
A
ARG
119
n
115
ARG
119
A
TYR
120
n
116
TYR
120
A
VAL
121
n
117
VAL
121
A
TRP
122
n
118
TRP
122
A
LEU
123
n
119
LEU
123
A
VAL
124
n
120
VAL
124
A
TYR
125
n
121
TYR
125
A
GLN
126
n
122
GLN
126
A
GLN
127
n
123
GLN
127
A
ASP
128
n
124
ASP
128
A
LYS
129
n
125
LYS
129
A
PRO
130
n
126
PRO
130
A
LEU
131
n
127
LEU
131
A
ARG
132
n
128
ARG
132
A
CYS
133
n
129
CYS
133
A
ASP
134
n
130
ASP
134
A
GLU
135
n
131
GLU
135
A
PRO
136
n
132
PRO
136
A
ILE
137
n
133
ILE
137
A
LEU
138
n
134
LEU
138
A
THR
139
n
135
THR
139
A
ASN
140
n
136
ASN
140
A
ARG
141
n
137
ARG
141
A
SER
142
n
138
SER
142
A
GLY
143
n
139
GLY
143
A
ASP
144
n
140
ASP
144
A
HIS
145
n
141
HIS
145
A
ARG
146
n
142
ARG
146
A
GLY
147
n
143
GLY
147
A
LYS
148
n
144
LYS
148
A
PHE
149
n
145
PHE
149
A
LYS
150
n
146
LYS
150
A
THR
151
n
147
THR
151
A
ALA
152
n
148
ALA
152
A
ALA
153
n
149
ALA
153
A
PHE
154
n
150
PHE
154
A
ARG
155
n
151
ARG
155
A
LYS
156
n
152
LYS
156
A
LYS
157
n
153
LYS
157
A
TYR
158
n
154
TYR
158
A
HIS
159
n
155
HIS
159
A
LEU
160
n
156
LEU
160
A
GLY
161
n
157
GLY
161
A
ALA
162
n
158
ALA
162
A
PRO
163
n
159
PRO
163
A
VAL
164
n
160
VAL
164
A
ALA
165
n
161
ALA
165
A
GLY
166
n
162
GLY
166
A
THR
167
n
163
THR
167
A
CYS
168
n
164
CYS
168
A
TYR
169
n
165
TYR
169
A
GLN
170
n
166
GLN
170
A
ALA
171
n
167
ALA
171
A
GLU
172
n
168
GLU
172
A
TRP
173
n
169
TRP
173
A
ASP
174
n
170
ASP
174
A
SER
175
n
171
SER
175
A
TYR
176
n
172
TYR
176
A
VAL
177
n
173
VAL
177
A
PRO
178
n
174
PRO
178
A
LYS
179
n
175
LYS
179
A
LEU
180
n
176
LEU
180
A
TYR
181
n
177
TYR
181
A
LYS
182
n
178
LYS
182
A
GLN
183
n
179
GLN
183
A
LEU
184
n
180
LEU
184
A
SER
185
n
181
SER
185
A
n
182
186
A
n
183
187
A
2.2223
-0.3801
0.1449
2.8388
0.2890
1.4450
0.0871
0.1771
-0.0747
-0.2599
-0.1300
0.2094
-0.0336
-0.1396
0.0429
0.0545
0.0212
-0.0282
0.0498
-0.0206
0.0169
refined
10.3695
22.7567
11.8122
X-RAY DIFFRACTION
A
6
A
2
A
185
A
181
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
101
A
O
ASN
97
A
N
VAL
90
A
N
VAL
86
A
O
VAL
89
A
O
VAL
85
A
N
LEU
66
A
N
LEU
62
A
N
THR
69
A
N
THR
65
A
O
VAL
121
A
O
VAL
117
A
N
TYR
120
A
N
TYR
116
A
O
TYR
169
A
O
TYR
165
A
O
GLY
166
A
O
GLY
162
A
N
HIS
23
A
N
HIS
19
A
O
ASN
101
A
O
ASN
97
A
N
VAL
90
A
N
VAL
86
A
O
VAL
89
A
O
VAL
85
A
N
LEU
66
A
N
LEU
62
A
N
THR
69
A
N
THR
65
A
O
VAL
121
A
O
VAL
117
A
N
TYR
120
A
N
TYR
116
A
O
TYR
169
A
O
TYR
165
A
O
GLN
170
A
O
GLN
166
A
N
GLN
39
A
N
GLN
35
A
O
ALA
32
A
O
ALA
28
A
N
TYR
29
A
N
TYR
25
A
N
ARG
26
A
N
ARG
22
A
O
SER
54
A
O
SER
50
1
A
CE
LYS
47
A
CE
LYS
43
0
Y
1
A
NZ
LYS
47
A
NZ
LYS
43
0
Y
1
A
CE
LYS
93
A
CE
LYS
89
0
Y
1
A
NZ
LYS
93
A
NZ
LYS
89
0
Y
1
A
NE
ARG
132
A
NE
ARG
128
0
Y
1
A
CZ
ARG
132
A
CZ
ARG
128
0
Y
1
A
NH1
ARG
132
A
NH1
ARG
128
0
Y
1
A
NH2
ARG
132
A
NH2
ARG
128
0
Y
1
A
CE
LYS
179
A
CE
LYS
175
0
Y
1
A
NZ
LYS
179
A
NZ
LYS
175
0
Y
1
A
MET
5
A
MET
1
1
Y
1
A
GLY
186
A
GLY
182
1
Y
1
A
LYS
187
A
LYS
183
1
Y
1
A
A
NZ
O
LYS
HOH
182
227
1.92
1
A
A
NE2
O
GLN
HOH
20
308
1.94
1
A
A
O
O
HOH
HOH
269
299
1.96
1
23.09
3.00
111.90
134.99
A
A
A
CG
CD
CE
LYS
LYS
LYS
47
47
47
N
1
6.82
0.90
118.30
125.12
A
A
A
CB
CG
OD2
ASP
ASP
ASP
72
72
72
N
1
A
A
CD
CE
LYS
LYS
47
47
-0.241
0.025
1.508
1.267
N
1
A
A
NZ
O
LYS
HOH
150
214
1.97
1_555
3_655
13.7
-1.47
0.00
0.00
-0.52
0.00
1.99
0.926
0.2666700
0.2104300
0.2131500
0.2131500
1.80
20
801
14777
14777
5.1
96.5
3.940
0.127
Random
LIKELY RESIDUAL
1
Isotropic
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.167
0.161
PDB ENTRY 1BD9
MAXIMUM LIKELIHOOD
1.80
20
123
1567
0
0
1444
0.012
0.021
1484
1.448
1.947
2023
4.201
3.000
179
16.413
15.000
256
0.105
0.200
215
0.007
0.020
1143
0.233
0.300
682
0.195
0.500
168
0.269
0.300
30
0.337
0.500
17
0.757
1.500
901
1.135
2.000
1462
1.981
3.000
583
3.080
4.500
561
0.2430000
0.2210000
1.923
139
2561
2561
8
94.5
17.9
1.8
30
1KN3
16223
15638
-3
-3
0.0840000
1
4.7
96.4
0.1160000
1.80
1.88
8.5
1
3.26
92.4
phasing
AMoRE
refinement
REFMAC
5.0
data reduction
DENZO
data scaling
SCALEPACK
Murine PEBP-2 (phosphatidylethanolamine-binding protein-2)
1
N
N
2
N
N
A
SER
13
A
SER
9
HELX_P
A
VAL
17
A
VAL
13
5
1
5
A
THR
42
A
THR
38
HELX_P
A
LYS
47
A
LYS
43
5
2
6
A
ASP
96
A
ASP
92
HELX_P
A
GLY
100
A
GLY
96
5
3
5
A
LYS
150
A
LYS
146
HELX_P
A
TYR
158
A
TYR
154
1
4
9
A
TYR
176
A
TYR
172
HELX_P
A
LEU
184
A
LEU
180
1
5
9
PROTEIN BINDING
Phosphatidylethanolamine binding, Raf-1 kinase inhibitor, Cis-peptide, PROTEIN BINDING
A
ALA
73
A
ALA
69
1
A
PRO
74
A
PRO
70
-1.99
A
ARG
82
A
ARG
78
1
A
GLU
83
A
GLU
79
-8.61
PEBP2_MOUSE
UNP
1
5
Q8VIN1
MSMWTGPLSLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPVYREW
HHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPV
AGTCYQAEWDSYVPKLYKQLSGK
5
187
1KN3
5
187
Q8VIN1
A
1
1
183
6
6
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ASN
101
A
ASN
97
A
SER
104
A
SER
100
A
TRP
84
A
TRP
80
A
LYS
93
A
LYS
89
A
LEU
63
A
LEU
59
A
ASP
70
A
ASP
66
A
HIS
118
A
HIS
114
A
GLN
126
A
GLN
122
A
ALA
165
A
ALA
161
A
ALA
171
A
ALA
167
A
HIS
23
A
HIS
19
A
LEU
24
A
LEU
20
A
ASN
101
A
ASN
97
A
SER
104
A
SER
100
A
TRP
84
A
TRP
80
A
LYS
93
A
LYS
89
A
LEU
63
A
LEU
59
A
ASP
70
A
ASP
66
A
HIS
118
A
HIS
114
A
GLN
126
A
GLN
122
A
ALA
165
A
ALA
161
A
ALA
171
A
ALA
167
A
GLN
39
A
GLN
35
A
VAL
40
A
VAL
36
A
ALA
32
A
ALA
28
A
VAL
34
A
VAL
30
A
ARG
26
A
ARG
22
A
TYR
29
A
TYR
25
A
SER
52
A
SER
48
A
SER
54
A
SER
50
19
P 21 21 21