.006867 .000000 .000000 .000000 .006867 .000000 .000000 .000000 .006867 .00000 .00000 .00000 Richard, S.B. Ferrer, J.L. Bowman, M.E. Lillo, A.M. Tetzlaff, C.N. Cane, D.E. Noel, J.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 145.630 145.630 145.630 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mn 2 54.938 MANGANESE (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N MN N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 277 8667 8672 10.1074/jbc.C100739200 11786530 Structure and mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. An enzyme in the mevalonate-independent isoprenoid biosynthetic pathway. 2002 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 8 641 648 10.1038/89691 Structure of 4-diphosphocytidyl-2-C-methylerythritol Synthetase Involved in Mevalonate-Independent Isoprenoid Biosynthesis 2001 10.2210/pdb1knk/pdb pdb_00001knk 1.000000 .000000 .000000 .000000 1.000000 .000000 .000000 .000000 1.000000 .00000 .00000 .00000 100 1 CCD 2001-10-10 ADSC QUANTUM 4 Si(111) OR Si(311) CRYSTALS, LN2 COOLED SINGLE WAVELENGTH M x-ray 1 0.9793 1.0 ID14-4 ESRF 0.9793 SYNCHROTRON ESRF BEAMLINE ID14-4 16920.531 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1 man polymer 54.938 MANGANESE (II) ION 1 syn non-polymer 18.015 water 11 nat water MECPS no no MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREA WRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREA WRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample ispF 562 Escherichia coli 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID PHIS8 1 VAPOR DIFFUSION, HANGING DROP 6.5 (NH4)2SO4, PEG 400, NaI, PIPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Atomic model Data collection Database references Derived calculations Refinement description 1 0 2002-06-18 1 1 2008-04-27 1 2 2011-07-13 1 3 2011-11-16 1 4 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Co-Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispF) from E. coli involved in mevalonate-independent isoprenoid biosynthesis, complexed with CMP/MECDP/Mn2+ RCSB Y RCSB 2001-12-18 REL REL MN MANGANESE (II) ION HOH water 1KNJ PDB ENTRY 1KNJ PDB experimental model MN 1 2 MN MN 201 A HOH 1 3 HOH HOH 202 A HOH 2 3 HOH HOH 203 A HOH 3 3 HOH HOH 204 A HOH 4 3 HOH HOH 205 A HOH 5 3 HOH HOH 206 A HOH 6 3 HOH HOH 207 A HOH 7 3 HOH HOH 208 A HOH 8 3 HOH HOH 209 A HOH 9 3 HOH HOH 210 A HOH 10 3 HOH HOH 211 A HOH 11 3 HOH HOH 212 A MET 1 n 1 MET 1 A ARG 2 n 2 ARG 2 A ILE 3 n 3 ILE 3 A GLY 4 n 4 GLY 4 A HIS 5 n 5 HIS 5 A GLY 6 n 6 GLY 6 A PHE 7 n 7 PHE 7 A ASP 8 n 8 ASP 8 A VAL 9 n 9 VAL 9 A HIS 10 n 10 HIS 10 A ALA 11 n 11 ALA 11 A PHE 12 n 12 PHE 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A GLU 15 n 15 GLU 15 A GLY 16 n 16 GLY 16 A PRO 17 n 17 PRO 17 A ILE 18 n 18 ILE 18 A ILE 19 n 19 ILE 19 A ILE 20 n 20 ILE 20 A GLY 21 n 21 GLY 21 A GLY 22 n 22 GLY 22 A VAL 23 n 23 VAL 23 A ARG 24 n 24 ARG 24 A ILE 25 n 25 ILE 25 A PRO 26 n 26 PRO 26 A TYR 27 n 27 TYR 27 A GLU 28 n 28 GLU 28 A LYS 29 n 29 LYS 29 A GLY 30 n 30 GLY 30 A LEU 31 n 31 LEU 31 A LEU 32 n 32 LEU 32 A ALA 33 n 33 ALA 33 A HIS 34 n 34 HIS 34 A SER 35 n 35 SER 35 A ASP 36 n 36 ASP 36 A GLY 37 n 37 GLY 37 A ASP 38 n 38 ASP 38 A VAL 39 n 39 VAL 39 A ALA 40 n 40 ALA 40 A LEU 41 n 41 LEU 41 A HIS 42 n 42 HIS 42 A ALA 43 n 43 ALA 43 A LEU 44 n 44 LEU 44 A THR 45 n 45 THR 45 A ASP 46 n 46 ASP 46 A ALA 47 n 47 ALA 47 A LEU 48 n 48 LEU 48 A LEU 49 n 49 LEU 49 A GLY 50 n 50 GLY 50 A ALA 51 n 51 ALA 51 A ALA 52 n 52 ALA 52 A ALA 53 n 53 ALA 53 A LEU 54 n 54 LEU 54 A GLY 55 n 55 GLY 55 A ASP 56 n 56 ASP 56 A ILE 57 n 57 ILE 57 A GLY 58 n 58 GLY 58 A LYS 59 n 59 LYS 59 A LEU 60 n 60 LEU 60 A PHE 61 n 61 PHE 61 A PRO 62 n 62 PRO 62 A ASP 63 n 63 ASP 63 A THR 64 n 64 THR 64 A ASP 65 n 65 ASP 65 A PRO 66 n 66 PRO 66 A ALA 67 n 67 ALA 67 A PHE 68 n 68 PHE 68 A LYS 69 n 69 LYS 69 A GLY 70 n 70 GLY 70 A ALA 71 n 71 ALA 71 A ASP 72 n 72 ASP 72 A SER 73 n 73 SER 73 A ARG 74 n 74 ARG 74 A GLU 75 n 75 GLU 75 A LEU 76 n 76 LEU 76 A LEU 77 n 77 LEU 77 A ARG 78 n 78 ARG 78 A GLU 79 n 79 GLU 79 A ALA 80 n 80 ALA 80 A TRP 81 n 81 TRP 81 A ARG 82 n 82 ARG 82 A ARG 83 n 83 ARG 83 A ILE 84 n 84 ILE 84 A GLN 85 n 85 GLN 85 A ALA 86 n 86 ALA 86 A LYS 87 n 87 LYS 87 A GLY 88 n 88 GLY 88 A TYR 89 n 89 TYR 89 A THR 90 n 90 THR 90 A LEU 91 n 91 LEU 91 A GLY 92 n 92 GLY 92 A ASN 93 n 93 ASN 93 A VAL 94 n 94 VAL 94 A ASP 95 n 95 ASP 95 A VAL 96 n 96 VAL 96 A THR 97 n 97 THR 97 A ILE 98 n 98 ILE 98 A ILE 99 n 99 ILE 99 A ALA 100 n 100 ALA 100 A GLN 101 n 101 GLN 101 A ALA 102 n 102 ALA 102 A PRO 103 n 103 PRO 103 A LYS 104 n 104 LYS 104 A MET 105 n 105 MET 105 A LEU 106 n 106 LEU 106 A PRO 107 n 107 PRO 107 A HIS 108 n 108 HIS 108 A ILE 109 n 109 ILE 109 A PRO 110 n 110 PRO 110 A GLN 111 n 111 GLN 111 A MET 112 n 112 MET 112 A ARG 113 n 113 ARG 113 A VAL 114 n 114 VAL 114 A PHE 115 n 115 PHE 115 A ILE 116 n 116 ILE 116 A ALA 117 n 117 ALA 117 A GLU 118 n 118 GLU 118 A ASP 119 n 119 ASP 119 A LEU 120 n 120 LEU 120 A GLY 121 n 121 GLY 121 A CYS 122 n 122 CYS 122 A HIS 123 n 123 HIS 123 A MET 124 n 124 MET 124 A ASP 125 n 125 ASP 125 A ASP 126 n 126 ASP 126 A VAL 127 n 127 VAL 127 A ASN 128 n 128 ASN 128 A VAL 129 n 129 VAL 129 A LYS 130 n 130 LYS 130 A ALA 131 n 131 ALA 131 A THR 132 n 132 THR 132 A THR 133 n 133 THR 133 A THR 134 n 134 THR 134 A GLU 135 n 135 GLU 135 A LYS 136 n 136 LYS 136 A LEU 137 n 137 LEU 137 A GLY 138 n 138 GLY 138 A PHE 139 n 139 PHE 139 A THR 140 n 140 THR 140 A GLY 141 n 141 GLY 141 A ARG 142 n 142 ARG 142 A GLY 143 n 143 GLY 143 A GLU 144 n 144 GLU 144 A GLY 145 n 145 GLY 145 A ILE 146 n 146 ILE 146 A ALA 147 n 147 ALA 147 A CYS 148 n 148 CYS 148 A GLU 149 n 149 GLU 149 A ALA 150 n 150 ALA 150 A VAL 151 n 151 VAL 151 A ALA 152 n 152 ALA 152 A LEU 153 n 153 LEU 153 A LEU 154 n 154 LEU 154 A ILE 155 n 155 ILE 155 A LYS 156 n 156 LYS 156 A n 157 157 A n 158 158 A n 159 159 A author_and_software_defined_assembly PISA,PQS 3 trimeric 5720 -34 18090 A ASP 8 A OD2 ASP 8 1_555 A MN 201 B MN MN 1_555 A HIS 10 A NE2 HIS 10 1_555 109.5 A ASP 8 A OD2 ASP 8 1_555 A MN 201 B MN MN 1_555 A HIS 42 A ND1 HIS 42 1_555 83.3 A HIS 10 A NE2 HIS 10 1_555 A MN 201 B MN MN 1_555 A HIS 42 A ND1 HIS 42 1_555 109.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5_555 z,x,y crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 9_555 y,z,x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 6 A N GLY 6 A O ALA 150 A O ALA 150 A O GLU 149 A O GLU 149 A N THR 97 A N THR 97 A N ILE 98 A N ILE 98 A O LYS 130 A O LYS 130 A N ILE 18 A N ILE 18 A O ILE 25 A O ILE 25 1 A HOH 202 C HOH 1 A HOH 206 C HOH 1 A ALA 157 A ALA 157 1 Y 1 A THR 158 A THR 158 1 Y 1 A LYS 159 A LYS 159 1 Y 1 25.52 2.70 111.00 136.52 A A A N CA C ILE ILE ILE 155 155 155 N 1 18.13 2.70 111.00 129.13 A A A N CA C LYS LYS LYS 156 156 156 N 1 A GLU 15 52.63 -91.03 1 A TYR 27 -174.02 148.37 1 A LEU 32 -64.68 -122.97 1 A ALA 33 68.18 134.52 1 A SER 35 167.44 154.47 1 A ASP 56 -173.07 57.19 1 A ILE 57 51.95 79.59 1 A PRO 62 -64.66 -109.02 1 A ASP 63 -169.67 -31.79 1 A PRO 66 -50.68 1.49 1 A ALA 67 -63.42 -75.51 1 A LYS 69 -79.32 -81.17 1 A CYS 122 50.15 164.90 1 A THR 134 82.20 -7.73 1 A LEU 137 -103.74 -71.20 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 72.3 .33 .00 .00 -.16 .00 -.16 0.2490000 .008 0.2320000 2.80 24.74 1088 22633 22633 4.8 94.7 RANDOM 623227.17 .000000 1 RESTRAINED THROUGHOUT 0.0 Rigid body PDB ENTRY 1KNJ Engh & Huber FLAT MODEL 58.3984 .369238 .41 .39 5.00 .50 .54 2.80 24.74 11 1178 1 0 1166 .010 1.8 24.4 .84 0.3670000 .027 0.3660000 2.98 187 3179 3179 6 5.6 84.3 111.6 2.80 30.00 1KNK 24117 24117 1 0 0.0910000 1 15.7 3.54 93.6 2.80 2.90 5.0 404 0.4150000 1 3.3 96.9 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate Synthase (ispF) from E. coli involved in Mevalonate-Independent Isoprenoid Biosynthesis 1 N N 2 N N 3 N N The biological assembly is a homotrimer generated from the monomer in the asymmetric unit by the operations: z,x,y and y,z,x A ASP 38 A ASP 38 HELX_P A ALA 53 A ALA 53 1 1 16 A ASP 72 A ASP 72 HELX_P A LYS 87 A LYS 87 1 2 16 A MET 105 A MET 105 HELX_P A PRO 107 A PRO 107 5 3 3 A HIS 108 A HIS 108 HELX_P A ALA 117 A ALA 117 1 4 10 A HIS 123 A HIS 123 HELX_P A ASP 125 A ASP 125 5 5 3 metalc 2.339 A ASP 8 A OD2 ASP 8 1_555 A MN 201 B MN MN 1_555 metalc 2.719 A HIS 10 A NE2 HIS 10 1_555 A MN 201 B MN MN 1_555 metalc 2.457 A HIS 42 A ND1 HIS 42 1_555 A MN 201 B MN MN 1_555 METAL BINDING PROTEIN isoprenoids, deoxyxylulose/methyl-erythritol-phosphate pathway, cyclodiphosphate, MEP, YgbB, ispF, MECDP, 2-C-methyl-D-erythritol-2, 4-cyclodiphosphate synthase, METAL BINDING PROTEIN A ALA 102 A ALA 102 1 A PRO 103 A PRO 103 -1.77 ISPF_ECOLI UNP 1 1 P62617 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREA WRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK 1 159 1KNK 1 159 P62617 A 1 1 159 4 2 anti-parallel anti-parallel parallel anti-parallel A ARG 2 A ARG 2 A ALA 11 A ALA 11 A GLY 145 A GLY 145 A LEU 154 A LEU 154 A ASN 93 A ASN 93 A ILE 99 A ILE 99 A VAL 127 A VAL 127 A THR 132 A THR 132 A ILE 18 A ILE 18 A ILE 20 A ILE 20 A VAL 23 A VAL 23 A ILE 25 A ILE 25 BINDING SITE FOR RESIDUE MN A 201 A MN 201 Software 3 A ASP 8 A ASP 8 3 1_555 A HIS 10 A HIS 10 3 1_555 A HIS 42 A HIS 42 3 1_555 199 I 21 3