0.038911
0.000000
0.013398
0.000000
0.026178
0.000000
0.000000
0.000000
0.036723
0.00000
0.00000
0.00000
Arnoux, B.
Merigeau, K.
Saludjian, P.
Norris, F.
Norris, K.
Bjorn, S.
Olsen, O.
Petersen, L.
Ducruix, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
109.00
90.00
25.700
38.200
28.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
246
609
617
10.1006/jmbi.1994.0112
7533217
The 1.6 A structure of Kunitz-type domain from the alpha 3 chain of human type VI collagen.
1995
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
6639.508
COLLAGEN TYPE VI
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
43
nat
water
no
no
ETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPV
ETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
baker's yeast
Saccharomyces
sample
9606
Homo sapiens
4932
Saccharomyces cerevisiae
2.01
38.88
repository
Initial release
Version format compliance
Version format compliance
1
0
1994-11-01
1
1
2008-03-24
1
2
2011-07-13
Y
1994-08-18
REL
SO4
SULFATE ION
HOH
water
THE TERTIARY STRUCTURE OF THE C5 FRAGMENT IS VERY CLOSE TO
ALL OTHER MEMBERS OF THE KUNITZ FAMILY.
ONE SULFATE ION LINKS MOLECULE OF SYMMETRY 1 WITH MOLECULE
OF SYMMETRY 1 - X, Y, Z.
THE SEQUENCE HAS NOT BEEN REPORTED. IT WAS DERIVED FROM
HUMAN COLLAGEN ALPHA3 (VI) CHAIN MRNA AND CONFIRMED BY
CHU ET AL., EMBO JOURNAL, VOL. 9, 385, (1990).
SO4
58
2
SO4
SO4
59
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
n
1
1
A
THR
2
n
2
THR
2
A
ASP
3
n
3
ASP
3
A
ILE
4
n
4
ILE
4
A
CYS
5
n
5
CYS
5
A
LYS
6
n
6
LYS
6
A
LEU
7
n
7
LEU
7
A
PRO
8
n
8
PRO
8
A
LYS
9
n
9
LYS
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
THR
13
n
13
THR
13
A
CYS
14
n
14
CYS
14
A
ARG
15
n
15
ARG
15
A
ASP
16
n
16
ASP
16
A
PHE
17
n
17
PHE
17
A
ILE
18
n
18
ILE
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
TRP
21
n
21
TRP
21
A
TYR
22
n
22
TYR
22
A
TYR
23
n
23
TYR
23
A
ASP
24
n
24
ASP
24
A
PRO
25
n
25
PRO
25
A
ASN
26
n
26
ASN
26
A
THR
27
n
27
THR
27
A
LYS
28
n
28
LYS
28
A
SER
29
n
29
SER
29
A
CYS
30
n
30
CYS
30
A
ALA
31
n
31
ALA
31
A
ARG
32
n
32
ARG
32
A
PHE
33
n
33
PHE
33
A
TRP
34
n
34
TRP
34
A
TYR
35
n
35
TYR
35
A
GLY
36
n
36
GLY
36
A
GLY
37
n
37
GLY
37
A
CYS
38
n
38
CYS
38
A
GLY
39
n
39
GLY
39
A
GLY
40
n
40
GLY
40
A
ASN
41
n
41
ASN
41
A
GLU
42
n
42
GLU
42
A
ASN
43
n
43
ASN
43
A
LYS
44
n
44
LYS
44
A
PHE
45
n
45
PHE
45
A
GLY
46
n
46
GLY
46
A
SER
47
n
47
SER
47
A
GLN
48
n
48
GLN
48
A
LYS
49
n
49
LYS
49
A
GLU
50
n
50
GLU
50
A
CYS
51
n
51
CYS
51
A
GLU
52
n
52
GLU
52
A
LYS
53
n
53
LYS
53
A
VAL
54
n
54
VAL
54
A
CYS
55
n
55
CYS
55
A
ALA
56
n
56
ALA
56
A
n
57
57
A
n
58
58
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
24
A
N
ASP
24
A
O
SER
29
A
O
SER
29
1
A
GLU
1
A
GLU
1
1
Y
1
A
PRO
57
A
PRO
57
1
Y
1
A
VAL
58
A
VAL
58
1
Y
1
A
CYS
14
83.28
175.21
15.31
0.189
0.189
1.6
7.
6276
82.0
1
0.0
1.6
7.
43
488
5
0
440
0.011
1.45
1KNT
8388
0.
1
92.
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
COLLAGEN TYPE VI (KUNITZ-TYPE DOMAIN C5 FROM THE ALPHA 3 CHAIN)
THE 1.6 ANGSTROMS STRUCTURE OF THE KUNITZ-TYPE DOMAIN FROM THE ALPHA3 CHAIN OF THE HUMAN TYPE VI COLLAGEN
1
N
N
2
N
N
3
N
N
A
THR
2
A
THR
2
HELX_P
A
LEU
7
A
LEU
7
5
1
6
A
SER
47
A
SER
47
HELX_P
A
ALA
56
A
ALA
56
1
2
10
disulf
2.023
A
CYS
5
A
SG
CYS
5
1_555
A
CYS
55
A
SG
CYS
55
1_555
disulf
2.026
A
CYS
14
A
SG
CYS
14
1_555
A
CYS
38
A
SG
CYS
38
1_555
disulf
2.030
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
51
A
SG
CYS
51
1_555
COLLAGEN TYPE VI FRAGMENT
COLLAGEN TYPE VI FRAGMENT
CO6A3_HUMAN
UNP
1
1
P12111
MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFAL
VQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDGLAL
PSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDS
ADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGELA
NIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVF
TVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQD
LIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGK
SLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDI
IFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTG
SALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMD
DFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQY
SDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPA
SNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGV
RSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNIL
VSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV
ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDP
KAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVVVPAVELK
QFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFL
IDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKAL
EFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFR
ELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGL
VQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQ
DVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVI
LGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQ
HPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGF
MYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNG
TQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP
GQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPG
LIGEQGISGPRGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPG
PKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP
TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVAL
TSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNT
AVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKK
YIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIE
YTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK
STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTT
KPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAK
PVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEITENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVT
DRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTC
RDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT
3107
3164
1KNT
1
58
P12111
A
1
1
58
2
anti-parallel
A
ILE
18
A
ILE
18
A
ASP
24
A
ASP
24
A
SER
29
A
SER
29
A
TYR
35
A
TYR
35
BINDING SITE FOR RESIDUE SO4 A 59
Software
7
A
TRP
21
A
TRP
21
7
1_555
A
LYS
28
A
LYS
28
7
1_655
A
GLN
48
A
GLN
48
7
1_555
A
HOH
219
C
HOH
7
1_555
A
HOH
227
C
HOH
7
1_555
A
HOH
232
C
HOH
7
1_555
A
HOH
234
C
HOH
7
1_555
4
P 1 21 1