0.038911 0.000000 0.013398 0.000000 0.026178 0.000000 0.000000 0.000000 0.036723 0.00000 0.00000 0.00000 Arnoux, B. Merigeau, K. Saludjian, P. Norris, F. Norris, K. Bjorn, S. Olsen, O. Petersen, L. Ducruix, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 109.00 90.00 25.700 38.200 28.800 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 246 609 617 10.1006/jmbi.1994.0112 7533217 The 1.6 A structure of Kunitz-type domain from the alpha 3 chain of human type VI collagen. 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 6639.508 COLLAGEN TYPE VI 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 43 nat water no no ETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPV ETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo baker's yeast Saccharomyces sample 9606 Homo sapiens 4932 Saccharomyces cerevisiae 2.01 38.88 repository Initial release Version format compliance Version format compliance 1 0 1994-11-01 1 1 2008-03-24 1 2 2011-07-13 Y 1994-08-18 REL SO4 SULFATE ION HOH water THE TERTIARY STRUCTURE OF THE C5 FRAGMENT IS VERY CLOSE TO ALL OTHER MEMBERS OF THE KUNITZ FAMILY. ONE SULFATE ION LINKS MOLECULE OF SYMMETRY 1 WITH MOLECULE OF SYMMETRY 1 - X, Y, Z. THE SEQUENCE HAS NOT BEEN REPORTED. IT WAS DERIVED FROM HUMAN COLLAGEN ALPHA3 (VI) CHAIN MRNA AND CONFIRMED BY CHU ET AL., EMBO JOURNAL, VOL. 9, 385, (1990). SO4 58 2 SO4 SO4 59 A HOH 200 3 HOH HOH 200 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A n 1 1 A THR 2 n 2 THR 2 A ASP 3 n 3 ASP 3 A ILE 4 n 4 ILE 4 A CYS 5 n 5 CYS 5 A LYS 6 n 6 LYS 6 A LEU 7 n 7 LEU 7 A PRO 8 n 8 PRO 8 A LYS 9 n 9 LYS 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A THR 13 n 13 THR 13 A CYS 14 n 14 CYS 14 A ARG 15 n 15 ARG 15 A ASP 16 n 16 ASP 16 A PHE 17 n 17 PHE 17 A ILE 18 n 18 ILE 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A TRP 21 n 21 TRP 21 A TYR 22 n 22 TYR 22 A TYR 23 n 23 TYR 23 A ASP 24 n 24 ASP 24 A PRO 25 n 25 PRO 25 A ASN 26 n 26 ASN 26 A THR 27 n 27 THR 27 A LYS 28 n 28 LYS 28 A SER 29 n 29 SER 29 A CYS 30 n 30 CYS 30 A ALA 31 n 31 ALA 31 A ARG 32 n 32 ARG 32 A PHE 33 n 33 PHE 33 A TRP 34 n 34 TRP 34 A TYR 35 n 35 TYR 35 A GLY 36 n 36 GLY 36 A GLY 37 n 37 GLY 37 A CYS 38 n 38 CYS 38 A GLY 39 n 39 GLY 39 A GLY 40 n 40 GLY 40 A ASN 41 n 41 ASN 41 A GLU 42 n 42 GLU 42 A ASN 43 n 43 ASN 43 A LYS 44 n 44 LYS 44 A PHE 45 n 45 PHE 45 A GLY 46 n 46 GLY 46 A SER 47 n 47 SER 47 A GLN 48 n 48 GLN 48 A LYS 49 n 49 LYS 49 A GLU 50 n 50 GLU 50 A CYS 51 n 51 CYS 51 A GLU 52 n 52 GLU 52 A LYS 53 n 53 LYS 53 A VAL 54 n 54 VAL 54 A CYS 55 n 55 CYS 55 A ALA 56 n 56 ALA 56 A n 57 57 A n 58 58 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASP 24 A N ASP 24 A O SER 29 A O SER 29 1 A GLU 1 A GLU 1 1 Y 1 A PRO 57 A PRO 57 1 Y 1 A VAL 58 A VAL 58 1 Y 1 A CYS 14 83.28 175.21 15.31 0.189 0.189 1.6 7. 6276 82.0 1 0.0 1.6 7. 43 488 5 0 440 0.011 1.45 1KNT 8388 0. 1 92. model building X-PLOR refinement X-PLOR phasing X-PLOR COLLAGEN TYPE VI (KUNITZ-TYPE DOMAIN C5 FROM THE ALPHA 3 CHAIN) THE 1.6 ANGSTROMS STRUCTURE OF THE KUNITZ-TYPE DOMAIN FROM THE ALPHA3 CHAIN OF THE HUMAN TYPE VI COLLAGEN 1 N N 2 N N 3 N N A THR 2 A THR 2 HELX_P A LEU 7 A LEU 7 5 1 6 A SER 47 A SER 47 HELX_P A ALA 56 A ALA 56 1 2 10 disulf 2.023 A CYS 5 A SG CYS 5 1_555 A CYS 55 A SG CYS 55 1_555 disulf 2.026 A CYS 14 A SG CYS 14 1_555 A CYS 38 A SG CYS 38 1_555 disulf 2.030 A CYS 30 A SG CYS 30 1_555 A CYS 51 A SG CYS 51 1_555 COLLAGEN TYPE VI FRAGMENT COLLAGEN TYPE VI FRAGMENT CO6A3_HUMAN UNP 1 1 P12111 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFAL VQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDGLAL PSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDS ADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGELA NIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVF TVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQD LIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGK SLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDI IFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTG SALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMD DFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQY SDDVKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPA SNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGV RSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNIL VSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDP KAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVVVPAVELK QFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFL IDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKAL EFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFR ELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGL VQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQ DVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVI LGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQ HPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGF MYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNG TQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP GQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPG LIGEQGISGPRGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPG PKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVAL TSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNT AVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKK YIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIE YTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTT KPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAK PVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEITENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVT DRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTC RDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 3107 3164 1KNT 1 58 P12111 A 1 1 58 2 anti-parallel A ILE 18 A ILE 18 A ASP 24 A ASP 24 A SER 29 A SER 29 A TYR 35 A TYR 35 BINDING SITE FOR RESIDUE SO4 A 59 Software 7 A TRP 21 A TRP 21 7 1_555 A LYS 28 A LYS 28 7 1_655 A GLN 48 A GLN 48 7 1_555 A HOH 219 C HOH 7 1_555 A HOH 227 C HOH 7 1_555 A HOH 232 C HOH 7 1_555 A HOH 234 C HOH 7 1_555 4 P 1 21 1