0.017452
0.000000
0.000000
0.000000
0.009785
0.000000
0.000000
0.000000
0.009191
0.00000
0.00000
0.00000
Pedersen, L.C.
Benning, M.M.
Holden, H.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
57.300
102.200
108.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C11 H18 N5 O12 P3
505.208
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C18 H36 N4 O11
484.499
KANAMYCIN A
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
S
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
R
P
N
23
N
O
N
24
N
O
N
25
N
C
N
26
N
O
N
27
N
C
N
28
R
C
N
29
N
O
N
30
S
C
N
31
N
O
N
32
R
C
N
33
N
O
N
34
R
C
Y
35
N
N
Y
36
N
C
Y
37
N
N
Y
38
N
C
Y
39
N
C
N
40
N
N
Y
41
N
N
Y
42
N
C
Y
43
N
N
Y
44
N
C
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
N
N
71
N
C
N
72
N
N
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
R
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
S
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
R
C
N
233
R
C
N
234
S
C
N
235
S
C
N
236
R
C
N
237
N
C
N
238
R
C
N
239
S
C
N
240
R
C
N
241
R
C
N
242
S
C
N
243
N
C
N
244
S
C
N
245
R
C
N
246
S
C
N
247
S
C
N
248
R
C
N
249
N
C
N
250
N
N
N
251
N
N
N
252
N
N
N
253
N
N
N
254
N
O
N
255
N
O
N
256
N
O
N
257
N
O
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
N
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
S
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
MG
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
C
N
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
N
414
N
O
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
R
C
N
428
N
O
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
N
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
N
496
N
C
N
497
N
C
N
498
N
O
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
Y
49
N
sing
Y
50
N
sing
Y
51
N
doub
N
52
N
sing
Y
53
N
sing
Y
54
N
sing
Y
55
N
doub
N
56
N
sing
Y
57
N
doub
N
58
N
sing
N
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
Y
439
N
doub
Y
440
N
sing
Y
441
N
sing
N
442
N
sing
Y
443
N
doub
Y
444
N
sing
Y
445
N
sing
N
446
N
sing
Y
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
doub
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
Y
467
N
doub
Y
468
N
sing
Y
469
N
sing
N
470
N
sing
Y
471
N
doub
N
472
N
sing
Y
473
N
doub
N
474
N
sing
Y
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
doub
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
34
13305
13311
10.1021/bi00041a005
7577914
Structural investigation of the antibiotic and ATP-binding sites in kanamycin nucleotidyltransferase.
1995
10.2210/pdb1kny/pdb
pdb_00001kny
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
28873.611
KANAMYCIN NUCLEOTIDYLTRANSFERASE
2.7.7.-
D80Y
2
man
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
505.208
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2
syn
non-polymer
484.499
KANAMYCIN A
2
syn
non-polymer
18.015
water
43
nat
water
KNTASE
no
no
MNGPIIMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTEEAEFSHEWTTGEWKVEVNFY
SEEILLDYASQVESDWPLTHGQFFSILPIYDSGGYLEKVYQTAKSVEAQTFHDAICALIVEELFEYAGKWRNIRVQGPTT
FLPSLTVQVAMAGAMLIGLHHRICYTTSASVLTEAVKQSDLPSGYDHLCQFVMSGQLSDSEKLLESLENFWNGIQEWTER
HGYIVDVSKRIPF
MNGPIIMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTEEAEFSHEWTTGEWKVEVNFY
SEEILLDYASQVESDWPLTHGQFFSILPIYDSGGYLEKVYQTAKSVEAQTFHDAICALIVEELFEYAGKWRNIRVQGPTT
FLPSLTVQVAMAGAMLIGLHHRICYTTSASVLTEAVKQSDLPSGYDHLCQFVMSGQLSDSEKLLESLENFWNGIQEWTER
HGYIVDVSKRIPF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Staphylococcus
Escherichia
sample
1280
Staphylococcus aureus
562
Escherichia coli
PX(T7)TK101
2.76
55.39
database_2
pdbx_database_status
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
Data collection
1
0
1996-08-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-07-07
REL
MG
MAGNESIUM ION
APC
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
KAN
KANAMYCIN A
HOH
water
MG
603
2
MG
MG
603
A
APC
556
3
APC
APC
556
A
KAN
558
4
KAN
KAN
558
A
MG
604
2
MG
MG
604
B
APC
557
3
APC
APC
557
B
KAN
559
4
KAN
KAN
559
B
HOH
1
5
HOH
HOH
604
A
HOH
2
5
HOH
HOH
605
A
HOH
3
5
HOH
HOH
606
A
HOH
4
5
HOH
HOH
607
A
HOH
5
5
HOH
HOH
608
A
HOH
6
5
HOH
HOH
609
A
HOH
7
5
HOH
HOH
610
A
HOH
12
5
HOH
HOH
611
A
HOH
14
5
HOH
HOH
612
A
HOH
15
5
HOH
HOH
613
A
HOH
16
5
HOH
HOH
614
A
HOH
17
5
HOH
HOH
615
A
HOH
18
5
HOH
HOH
616
A
HOH
19
5
HOH
HOH
617
A
HOH
20
5
HOH
HOH
618
A
HOH
21
5
HOH
HOH
619
A
HOH
22
5
HOH
HOH
620
A
HOH
23
5
HOH
HOH
621
A
HOH
24
5
HOH
HOH
622
A
HOH
25
5
HOH
HOH
623
A
HOH
34
5
HOH
HOH
624
A
HOH
35
5
HOH
HOH
625
A
HOH
36
5
HOH
HOH
626
A
HOH
37
5
HOH
HOH
627
A
HOH
38
5
HOH
HOH
628
A
HOH
39
5
HOH
HOH
629
A
HOH
40
5
HOH
HOH
630
A
HOH
42
5
HOH
HOH
631
A
HOH
8
5
HOH
HOH
605
B
HOH
9
5
HOH
HOH
606
B
HOH
10
5
HOH
HOH
607
B
HOH
11
5
HOH
HOH
608
B
HOH
13
5
HOH
HOH
609
B
HOH
26
5
HOH
HOH
610
B
HOH
27
5
HOH
HOH
611
B
HOH
28
5
HOH
HOH
612
B
HOH
29
5
HOH
HOH
613
B
HOH
30
5
HOH
HOH
614
B
HOH
31
5
HOH
HOH
615
B
HOH
32
5
HOH
HOH
616
B
HOH
33
5
HOH
HOH
617
B
HOH
41
5
HOH
HOH
618
B
HOH
43
5
HOH
HOH
619
B
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
GLY
3
n
3
GLY
3
A
PRO
4
n
4
PRO
4
A
ILE
5
n
5
ILE
5
A
ILE
6
n
6
ILE
6
A
MET
7
n
7
MET
7
A
THR
8
n
8
THR
8
A
ARG
9
n
9
ARG
9
A
GLU
10
n
10
GLU
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
MET
13
n
13
MET
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
VAL
16
n
16
VAL
16
A
HIS
17
n
17
HIS
17
A
GLU
18
n
18
GLU
18
A
ILE
19
n
19
ILE
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ARG
22
n
22
ARG
22
A
ILE
23
n
23
ILE
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
LYS
26
n
26
LYS
26
A
TYR
27
n
27
TYR
27
A
GLY
28
n
28
GLY
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
VAL
31
n
31
VAL
31
A
LYS
32
n
32
LYS
32
A
ALA
33
n
33
ALA
33
A
ILE
34
n
34
ILE
34
A
GLY
35
n
35
GLY
35
A
VAL
36
n
36
VAL
36
A
TYR
37
n
37
TYR
37
A
GLY
38
n
38
GLY
38
A
SER
39
n
39
SER
39
A
LEU
40
n
40
LEU
40
A
GLY
41
n
41
GLY
41
A
ARG
42
n
42
ARG
42
A
GLN
43
n
43
GLN
43
A
THR
44
n
44
THR
44
A
ASP
45
n
45
ASP
45
A
GLY
46
n
46
GLY
46
A
PRO
47
n
47
PRO
47
A
TYR
48
n
48
TYR
48
A
SER
49
n
49
SER
49
A
ASP
50
n
50
ASP
50
A
ILE
51
n
51
ILE
51
A
GLU
52
n
52
GLU
52
A
MET
53
n
53
MET
53
A
MET
54
n
54
MET
54
A
CYS
55
n
55
CYS
55
A
VAL
56
n
56
VAL
56
A
MET
57
n
57
MET
57
A
SER
58
n
58
SER
58
A
THR
59
n
59
THR
59
A
GLU
60
n
60
GLU
60
A
GLU
61
n
61
GLU
61
A
ALA
62
n
62
ALA
62
A
GLU
63
n
63
GLU
63
A
PHE
64
n
64
PHE
64
A
SER
65
n
65
SER
65
A
HIS
66
n
66
HIS
66
A
GLU
67
n
67
GLU
67
A
TRP
68
n
68
TRP
68
A
THR
69
n
69
THR
69
A
THR
70
n
70
THR
70
A
GLY
71
n
71
GLY
71
A
GLU
72
n
72
GLU
72
A
TRP
73
n
73
TRP
73
A
LYS
74
n
74
LYS
74
A
VAL
75
n
75
VAL
75
A
GLU
76
n
76
GLU
76
A
VAL
77
n
77
VAL
77
A
ASN
78
n
78
ASN
78
A
PHE
79
n
79
PHE
79
A
TYR
80
n
80
TYR
80
A
SER
81
n
81
SER
81
A
GLU
82
n
82
GLU
82
A
GLU
83
n
83
GLU
83
A
ILE
84
n
84
ILE
84
A
LEU
85
n
85
LEU
85
A
LEU
86
n
86
LEU
86
A
ASP
87
n
87
ASP
87
A
TYR
88
n
88
TYR
88
A
ALA
89
n
89
ALA
89
A
SER
90
n
90
SER
90
A
GLN
91
n
91
GLN
91
A
VAL
92
n
92
VAL
92
A
GLU
93
n
93
GLU
93
A
SER
94
n
94
SER
94
A
ASP
95
n
95
ASP
95
A
TRP
96
n
96
TRP
96
A
PRO
97
n
97
PRO
97
A
LEU
98
n
98
LEU
98
A
THR
99
n
99
THR
99
A
HIS
100
n
100
HIS
100
A
GLY
101
n
101
GLY
101
A
GLN
102
n
102
GLN
102
A
PHE
103
n
103
PHE
103
A
PHE
104
n
104
PHE
104
A
SER
105
n
105
SER
105
A
ILE
106
n
106
ILE
106
A
LEU
107
n
107
LEU
107
A
PRO
108
n
108
PRO
108
A
ILE
109
n
109
ILE
109
A
TYR
110
n
110
TYR
110
A
ASP
111
n
111
ASP
111
A
SER
112
n
112
SER
112
A
GLY
113
n
113
GLY
113
A
GLY
114
n
114
GLY
114
A
TYR
115
n
115
TYR
115
A
LEU
116
n
116
LEU
116
A
GLU
117
n
117
GLU
117
A
LYS
118
n
118
LYS
118
A
VAL
119
n
119
VAL
119
A
TYR
120
n
120
TYR
120
A
GLN
121
n
121
GLN
121
A
THR
122
n
122
THR
122
A
ALA
123
n
123
ALA
123
A
LYS
124
n
124
LYS
124
A
SER
125
n
125
SER
125
A
VAL
126
n
126
VAL
126
A
GLU
127
n
127
GLU
127
A
ALA
128
n
128
ALA
128
A
GLN
129
n
129
GLN
129
A
THR
130
n
130
THR
130
A
PHE
131
n
131
PHE
131
A
HIS
132
n
132
HIS
132
A
ASP
133
n
133
ASP
133
A
ALA
134
n
134
ALA
134
A
ILE
135
n
135
ILE
135
A
CYS
136
n
136
CYS
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
ILE
139
n
139
ILE
139
A
VAL
140
n
140
VAL
140
A
GLU
141
n
141
GLU
141
A
GLU
142
n
142
GLU
142
A
LEU
143
n
143
LEU
143
A
PHE
144
n
144
PHE
144
A
GLU
145
n
145
GLU
145
A
TYR
146
n
146
TYR
146
A
ALA
147
n
147
ALA
147
A
GLY
148
n
148
GLY
148
A
LYS
149
n
149
LYS
149
A
TRP
150
n
150
TRP
150
A
ARG
151
n
151
ARG
151
A
ASN
152
n
152
ASN
152
A
ILE
153
n
153
ILE
153
A
ARG
154
n
154
ARG
154
A
VAL
155
n
155
VAL
155
A
GLN
156
n
156
GLN
156
A
GLY
157
n
157
GLY
157
A
PRO
158
n
158
PRO
158
A
THR
159
n
159
THR
159
A
THR
160
n
160
THR
160
A
PHE
161
n
161
PHE
161
A
LEU
162
n
162
LEU
162
A
PRO
163
n
163
PRO
163
A
SER
164
n
164
SER
164
A
LEU
165
n
165
LEU
165
A
THR
166
n
166
THR
166
A
VAL
167
n
167
VAL
167
A
GLN
168
n
168
GLN
168
A
VAL
169
n
169
VAL
169
A
ALA
170
n
170
ALA
170
A
MET
171
n
171
MET
171
A
ALA
172
n
172
ALA
172
A
GLY
173
n
173
GLY
173
A
ALA
174
n
174
ALA
174
A
MET
175
n
175
MET
175
A
LEU
176
n
176
LEU
176
A
ILE
177
n
177
ILE
177
A
GLY
178
n
178
GLY
178
A
LEU
179
n
179
LEU
179
A
HIS
180
n
180
HIS
180
A
HIS
181
n
181
HIS
181
A
ARG
182
n
182
ARG
182
A
ILE
183
n
183
ILE
183
A
CYS
184
n
184
CYS
184
A
TYR
185
n
185
TYR
185
A
THR
186
n
186
THR
186
A
THR
187
n
187
THR
187
A
SER
188
n
188
SER
188
A
ALA
189
n
189
ALA
189
A
SER
190
n
190
SER
190
A
VAL
191
n
191
VAL
191
A
LEU
192
n
192
LEU
192
A
THR
193
n
193
THR
193
A
GLU
194
n
194
GLU
194
A
ALA
195
n
195
ALA
195
A
VAL
196
n
196
VAL
196
A
LYS
197
n
197
LYS
197
A
GLN
198
n
198
GLN
198
A
SER
199
n
199
SER
199
A
ASP
200
n
200
ASP
200
A
LEU
201
n
201
LEU
201
A
PRO
202
n
202
PRO
202
A
SER
203
n
203
SER
203
A
GLY
204
n
204
GLY
204
A
TYR
205
n
205
TYR
205
A
ASP
206
n
206
ASP
206
A
HIS
207
n
207
HIS
207
A
LEU
208
n
208
LEU
208
A
CYS
209
n
209
CYS
209
A
GLN
210
n
210
GLN
210
A
PHE
211
n
211
PHE
211
A
VAL
212
n
212
VAL
212
A
MET
213
n
213
MET
213
A
SER
214
n
214
SER
214
A
GLY
215
n
215
GLY
215
A
GLN
216
n
216
GLN
216
A
LEU
217
n
217
LEU
217
A
SER
218
n
218
SER
218
A
ASP
219
n
219
ASP
219
A
SER
220
n
220
SER
220
A
GLU
221
n
221
GLU
221
A
LYS
222
n
222
LYS
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
GLU
225
n
225
GLU
225
A
SER
226
n
226
SER
226
A
LEU
227
n
227
LEU
227
A
GLU
228
n
228
GLU
228
A
ASN
229
n
229
ASN
229
A
PHE
230
n
230
PHE
230
A
TRP
231
n
231
TRP
231
A
ASN
232
n
232
ASN
232
A
GLY
233
n
233
GLY
233
A
ILE
234
n
234
ILE
234
A
GLN
235
n
235
GLN
235
A
GLU
236
n
236
GLU
236
A
TRP
237
n
237
TRP
237
A
THR
238
n
238
THR
238
A
GLU
239
n
239
GLU
239
A
ARG
240
n
240
ARG
240
A
HIS
241
n
241
HIS
241
A
GLY
242
n
242
GLY
242
A
TYR
243
n
243
TYR
243
A
ILE
244
n
244
ILE
244
A
VAL
245
n
245
VAL
245
A
ASP
246
n
246
ASP
246
A
VAL
247
n
247
VAL
247
A
SER
248
n
248
SER
248
A
LYS
249
n
249
LYS
249
A
ARG
250
n
250
ARG
250
A
ILE
251
n
251
ILE
251
A
PRO
252
n
252
PRO
252
A
PHE
253
n
253
PHE
253
A
MET
1
n
1
MET
1
B
ASN
2
n
2
ASN
2
B
GLY
3
n
3
GLY
3
B
PRO
4
n
4
PRO
4
B
ILE
5
n
5
ILE
5
B
ILE
6
n
6
ILE
6
B
MET
7
n
7
MET
7
B
THR
8
n
8
THR
8
B
ARG
9
n
9
ARG
9
B
GLU
10
n
10
GLU
10
B
GLU
11
n
11
GLU
11
B
ARG
12
n
12
ARG
12
B
MET
13
n
13
MET
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
VAL
16
n
16
VAL
16
B
HIS
17
n
17
HIS
17
B
GLU
18
n
18
GLU
18
B
ILE
19
n
19
ILE
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ARG
22
n
22
ARG
22
B
ILE
23
n
23
ILE
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
LYS
26
n
26
LYS
26
B
TYR
27
n
27
TYR
27
B
GLY
28
n
28
GLY
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
VAL
31
n
31
VAL
31
B
LYS
32
n
32
LYS
32
B
ALA
33
n
33
ALA
33
B
ILE
34
n
34
ILE
34
B
GLY
35
n
35
GLY
35
B
VAL
36
n
36
VAL
36
B
TYR
37
n
37
TYR
37
B
GLY
38
n
38
GLY
38
B
SER
39
n
39
SER
39
B
LEU
40
n
40
LEU
40
B
GLY
41
n
41
GLY
41
B
ARG
42
n
42
ARG
42
B
GLN
43
n
43
GLN
43
B
THR
44
n
44
THR
44
B
ASP
45
n
45
ASP
45
B
GLY
46
n
46
GLY
46
B
PRO
47
n
47
PRO
47
B
TYR
48
n
48
TYR
48
B
SER
49
n
49
SER
49
B
ASP
50
n
50
ASP
50
B
ILE
51
n
51
ILE
51
B
GLU
52
n
52
GLU
52
B
MET
53
n
53
MET
53
B
MET
54
n
54
MET
54
B
CYS
55
n
55
CYS
55
B
VAL
56
n
56
VAL
56
B
MET
57
n
57
MET
57
B
SER
58
n
58
SER
58
B
THR
59
n
59
THR
59
B
GLU
60
n
60
GLU
60
B
GLU
61
n
61
GLU
61
B
ALA
62
n
62
ALA
62
B
GLU
63
n
63
GLU
63
B
PHE
64
n
64
PHE
64
B
SER
65
n
65
SER
65
B
HIS
66
n
66
HIS
66
B
GLU
67
n
67
GLU
67
B
TRP
68
n
68
TRP
68
B
THR
69
n
69
THR
69
B
THR
70
n
70
THR
70
B
GLY
71
n
71
GLY
71
B
GLU
72
n
72
GLU
72
B
TRP
73
n
73
TRP
73
B
LYS
74
n
74
LYS
74
B
VAL
75
n
75
VAL
75
B
GLU
76
n
76
GLU
76
B
VAL
77
n
77
VAL
77
B
ASN
78
n
78
ASN
78
B
PHE
79
n
79
PHE
79
B
TYR
80
n
80
TYR
80
B
SER
81
n
81
SER
81
B
GLU
82
n
82
GLU
82
B
GLU
83
n
83
GLU
83
B
ILE
84
n
84
ILE
84
B
LEU
85
n
85
LEU
85
B
LEU
86
n
86
LEU
86
B
ASP
87
n
87
ASP
87
B
TYR
88
n
88
TYR
88
B
ALA
89
n
89
ALA
89
B
SER
90
n
90
SER
90
B
GLN
91
n
91
GLN
91
B
VAL
92
n
92
VAL
92
B
GLU
93
n
93
GLU
93
B
SER
94
n
94
SER
94
B
ASP
95
n
95
ASP
95
B
TRP
96
n
96
TRP
96
B
PRO
97
n
97
PRO
97
B
LEU
98
n
98
LEU
98
B
THR
99
n
99
THR
99
B
HIS
100
n
100
HIS
100
B
GLY
101
n
101
GLY
101
B
GLN
102
n
102
GLN
102
B
PHE
103
n
103
PHE
103
B
PHE
104
n
104
PHE
104
B
SER
105
n
105
SER
105
B
ILE
106
n
106
ILE
106
B
LEU
107
n
107
LEU
107
B
PRO
108
n
108
PRO
108
B
ILE
109
n
109
ILE
109
B
TYR
110
n
110
TYR
110
B
ASP
111
n
111
ASP
111
B
SER
112
n
112
SER
112
B
GLY
113
n
113
GLY
113
B
GLY
114
n
114
GLY
114
B
TYR
115
n
115
TYR
115
B
LEU
116
n
116
LEU
116
B
GLU
117
n
117
GLU
117
B
LYS
118
n
118
LYS
118
B
VAL
119
n
119
VAL
119
B
TYR
120
n
120
TYR
120
B
GLN
121
n
121
GLN
121
B
THR
122
n
122
THR
122
B
ALA
123
n
123
ALA
123
B
LYS
124
n
124
LYS
124
B
SER
125
n
125
SER
125
B
VAL
126
n
126
VAL
126
B
GLU
127
n
127
GLU
127
B
ALA
128
n
128
ALA
128
B
GLN
129
n
129
GLN
129
B
THR
130
n
130
THR
130
B
PHE
131
n
131
PHE
131
B
HIS
132
n
132
HIS
132
B
ASP
133
n
133
ASP
133
B
ALA
134
n
134
ALA
134
B
ILE
135
n
135
ILE
135
B
CYS
136
n
136
CYS
136
B
ALA
137
n
137
ALA
137
B
LEU
138
n
138
LEU
138
B
ILE
139
n
139
ILE
139
B
VAL
140
n
140
VAL
140
B
GLU
141
n
141
GLU
141
B
GLU
142
n
142
GLU
142
B
LEU
143
n
143
LEU
143
B
PHE
144
n
144
PHE
144
B
GLU
145
n
145
GLU
145
B
TYR
146
n
146
TYR
146
B
ALA
147
n
147
ALA
147
B
GLY
148
n
148
GLY
148
B
LYS
149
n
149
LYS
149
B
TRP
150
n
150
TRP
150
B
ARG
151
n
151
ARG
151
B
ASN
152
n
152
ASN
152
B
ILE
153
n
153
ILE
153
B
ARG
154
n
154
ARG
154
B
VAL
155
n
155
VAL
155
B
GLN
156
n
156
GLN
156
B
GLY
157
n
157
GLY
157
B
PRO
158
n
158
PRO
158
B
THR
159
n
159
THR
159
B
THR
160
n
160
THR
160
B
PHE
161
n
161
PHE
161
B
LEU
162
n
162
LEU
162
B
PRO
163
n
163
PRO
163
B
SER
164
n
164
SER
164
B
LEU
165
n
165
LEU
165
B
THR
166
n
166
THR
166
B
VAL
167
n
167
VAL
167
B
GLN
168
n
168
GLN
168
B
VAL
169
n
169
VAL
169
B
ALA
170
n
170
ALA
170
B
MET
171
n
171
MET
171
B
ALA
172
n
172
ALA
172
B
GLY
173
n
173
GLY
173
B
ALA
174
n
174
ALA
174
B
MET
175
n
175
MET
175
B
LEU
176
n
176
LEU
176
B
ILE
177
n
177
ILE
177
B
GLY
178
n
178
GLY
178
B
LEU
179
n
179
LEU
179
B
HIS
180
n
180
HIS
180
B
HIS
181
n
181
HIS
181
B
ARG
182
n
182
ARG
182
B
ILE
183
n
183
ILE
183
B
CYS
184
n
184
CYS
184
B
TYR
185
n
185
TYR
185
B
THR
186
n
186
THR
186
B
THR
187
n
187
THR
187
B
SER
188
n
188
SER
188
B
ALA
189
n
189
ALA
189
B
SER
190
n
190
SER
190
B
VAL
191
n
191
VAL
191
B
LEU
192
n
192
LEU
192
B
THR
193
n
193
THR
193
B
GLU
194
n
194
GLU
194
B
ALA
195
n
195
ALA
195
B
VAL
196
n
196
VAL
196
B
LYS
197
n
197
LYS
197
B
GLN
198
n
198
GLN
198
B
SER
199
n
199
SER
199
B
ASP
200
n
200
ASP
200
B
LEU
201
n
201
LEU
201
B
PRO
202
n
202
PRO
202
B
SER
203
n
203
SER
203
B
GLY
204
n
204
GLY
204
B
TYR
205
n
205
TYR
205
B
ASP
206
n
206
ASP
206
B
HIS
207
n
207
HIS
207
B
LEU
208
n
208
LEU
208
B
CYS
209
n
209
CYS
209
B
GLN
210
n
210
GLN
210
B
PHE
211
n
211
PHE
211
B
VAL
212
n
212
VAL
212
B
MET
213
n
213
MET
213
B
SER
214
n
214
SER
214
B
GLY
215
n
215
GLY
215
B
GLN
216
n
216
GLN
216
B
LEU
217
n
217
LEU
217
B
SER
218
n
218
SER
218
B
ASP
219
n
219
ASP
219
B
SER
220
n
220
SER
220
B
GLU
221
n
221
GLU
221
B
LYS
222
n
222
LYS
222
B
LEU
223
n
223
LEU
223
B
LEU
224
n
224
LEU
224
B
GLU
225
n
225
GLU
225
B
SER
226
n
226
SER
226
B
LEU
227
n
227
LEU
227
B
GLU
228
n
228
GLU
228
B
ASN
229
n
229
ASN
229
B
PHE
230
n
230
PHE
230
B
TRP
231
n
231
TRP
231
B
ASN
232
n
232
ASN
232
B
GLY
233
n
233
GLY
233
B
ILE
234
n
234
ILE
234
B
GLN
235
n
235
GLN
235
B
GLU
236
n
236
GLU
236
B
TRP
237
n
237
TRP
237
B
THR
238
n
238
THR
238
B
GLU
239
n
239
GLU
239
B
ARG
240
n
240
ARG
240
B
HIS
241
n
241
HIS
241
B
GLY
242
n
242
GLY
242
B
TYR
243
n
243
TYR
243
B
ILE
244
n
244
ILE
244
B
VAL
245
n
245
VAL
245
B
ASP
246
n
246
ASP
246
B
VAL
247
n
247
VAL
247
B
SER
248
n
248
SER
248
B
LYS
249
n
249
LYS
249
B
ARG
250
n
250
ARG
250
B
ILE
251
n
251
ILE
251
B
PRO
252
n
252
PRO
252
B
PHE
253
n
253
PHE
253
B
author_and_software_defined_assembly
PISA
2
dimeric
9370
-57
19930
A
GLU
52
A
OE2
GLU
52
1_555
A
MG
603
C
MG
MG
1_555
A
GLU
52
A
OE1
GLU
52
1_555
56.3
A
GLU
52
A
OE2
GLU
52
1_555
A
MG
603
C
MG
MG
1_555
A
APC
556
D
O1G
APC
1_555
139.5
A
GLU
52
A
OE1
GLU
52
1_555
A
MG
603
C
MG
MG
1_555
A
APC
556
D
O1G
APC
1_555
164.1
A
GLU
52
A
OE2
GLU
52
1_555
A
MG
603
C
MG
MG
1_555
A
APC
556
D
O2B
APC
1_555
87.8
A
GLU
52
A
OE1
GLU
52
1_555
A
MG
603
C
MG
MG
1_555
A
APC
556
D
O2B
APC
1_555
95.8
A
APC
556
D
O1G
APC
1_555
A
MG
603
C
MG
MG
1_555
A
APC
556
D
O2B
APC
1_555
86.9
B
GLU
52
B
OE1
GLU
52
1_555
B
MG
604
F
MG
MG
1_555
B
GLU
52
B
OE2
GLU
52
1_555
45.2
B
GLU
52
B
OE1
GLU
52
1_555
B
MG
604
F
MG
MG
1_555
B
APC
557
G
O1G
APC
1_555
176.1
B
GLU
52
B
OE2
GLU
52
1_555
B
MG
604
F
MG
MG
1_555
B
APC
557
G
O1G
APC
1_555
131.0
B
GLU
52
B
OE1
GLU
52
1_555
B
MG
604
F
MG
MG
1_555
B
APC
557
G
O2B
APC
1_555
80.6
B
GLU
52
B
OE2
GLU
52
1_555
B
MG
604
F
MG
MG
1_555
B
APC
557
G
O2B
APC
1_555
98.7
B
APC
557
G
O1G
APC
1_555
B
MG
604
F
MG
MG
1_555
B
APC
557
G
O2B
APC
1_555
101.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
64
A
O
PHE
64
A
N
PHE
79
A
N
PHE
79
A
O
GLU
76
A
O
GLU
76
A
N
ILE
51
A
N
ILE
51
A
O
GLU
52
A
O
GLU
52
A
N
TYR
37
A
N
TYR
37
A
O
ILE
34
A
O
ILE
34
A
N
TYR
110
A
N
TYR
110
B
O
PHE
64
B
O
PHE
64
B
N
PHE
79
B
N
PHE
79
B
O
GLU
76
B
O
GLU
76
B
N
ILE
51
B
N
ILE
51
B
O
GLU
52
B
O
GLU
52
B
N
TYR
37
B
N
TYR
37
B
O
ILE
34
B
O
ILE
34
B
N
TYR
110
B
N
TYR
110
1
B
B
OE2
O
GLU
HOH
52
619
2.13
1
-4.31
0.50
120.30
115.99
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
12
12
12
N
1
-6.29
0.90
118.30
112.01
A
A
A
CB
CG
OD1
ASP
ASP
ASP
45
45
45
N
1
-6.61
0.90
118.30
111.69
A
A
A
CB
CG
OD2
ASP
ASP
ASP
87
87
87
N
1
-5.54
0.90
118.30
112.76
A
A
A
CB
CG
OD2
ASP
ASP
ASP
219
219
219
N
1
-18.54
2.10
128.40
109.86
A
A
A
C
N
CD
ILE
PRO
PRO
251
252
252
Y
1
-6.20
0.90
118.30
112.10
B
B
B
CB
CG
OD2
ASP
ASP
ASP
25
25
25
N
1
6.30
0.90
118.30
124.60
B
B
B
CB
CG
OD1
ASP
ASP
ASP
29
29
29
N
1
-7.04
0.90
118.30
111.26
B
B
B
CB
CG
OD2
ASP
ASP
ASP
29
29
29
N
1
-6.29
0.90
118.30
112.01
B
B
B
CB
CG
OD1
ASP
ASP
ASP
45
45
45
N
1
6.16
0.90
118.30
124.46
B
B
B
CB
CG
OD1
ASP
ASP
ASP
50
50
50
N
1
-7.31
0.90
118.30
110.99
B
B
B
CB
CG
OD2
ASP
ASP
ASP
50
50
50
N
1
-7.07
0.90
118.30
111.23
B
B
B
CB
CG
OD2
ASP
ASP
ASP
87
87
87
N
1
-5.81
0.90
118.30
112.49
B
B
B
CB
CG
OD1
ASP
ASP
ASP
95
95
95
N
1
-14.47
2.10
128.40
113.93
B
B
B
C
N
CD
LEU
PRO
PRO
107
108
108
Y
1
-5.45
0.90
118.30
112.85
B
B
B
CB
CG
OD1
ASP
ASP
ASP
111
111
111
N
1
3.18
0.50
120.30
123.48
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
151
151
151
N
1
-3.22
0.50
120.30
117.08
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
151
151
151
N
1
-7.55
0.90
118.30
110.75
B
B
B
CB
CG
OD1
ASP
ASP
ASP
200
200
200
N
1
9.04
1.50
119.30
128.34
B
B
B
C
N
CA
ILE
PRO
PRO
251
252
252
Y
1
A
A
CD
OE1
GLU
GLU
21
21
0.069
0.011
1.252
1.321
N
1
A
A
CD
OE2
GLU
GLU
52
52
0.071
0.011
1.252
1.323
N
1
A
A
CD
OE2
GLU
GLU
60
60
0.079
0.011
1.252
1.331
N
1
A
A
CD
OE2
GLU
GLU
61
61
0.066
0.011
1.252
1.318
N
1
A
A
CD
OE1
GLU
GLU
63
63
0.068
0.011
1.252
1.320
N
1
A
A
CD
OE1
GLU
GLU
83
83
0.077
0.011
1.252
1.329
N
1
A
A
CD
OE2
GLU
GLU
93
93
0.070
0.011
1.252
1.322
N
1
A
A
CD
OE2
GLU
GLU
127
127
0.072
0.011
1.252
1.324
N
1
A
A
CD
OE1
GLU
GLU
141
141
0.067
0.011
1.252
1.319
N
1
A
A
CD
OE1
GLU
GLU
142
142
0.094
0.011
1.252
1.346
N
1
A
A
CD
OE2
GLU
GLU
145
145
0.098
0.011
1.252
1.350
N
1
A
A
CD
OE1
GLU
GLU
221
221
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE1
GLU
GLU
225
225
0.069
0.011
1.252
1.321
N
1
A
A
CD
OE1
GLU
GLU
236
236
0.070
0.011
1.252
1.322
N
1
B
B
CD
OE1
GLU
GLU
11
11
0.068
0.011
1.252
1.320
N
1
B
B
CD
OE1
GLU
GLU
60
60
0.074
0.011
1.252
1.326
N
1
B
B
CD
OE1
GLU
GLU
61
61
0.069
0.011
1.252
1.321
N
1
B
B
CD
OE1
GLU
GLU
63
63
0.071
0.011
1.252
1.323
N
1
B
B
CD
OE2
GLU
GLU
72
72
0.068
0.011
1.252
1.320
N
1
B
B
CD
OE1
GLU
GLU
76
76
0.071
0.011
1.252
1.323
N
1
B
B
CD
OE1
GLU
GLU
82
82
0.071
0.011
1.252
1.323
N
1
B
B
CD
OE1
GLU
GLU
117
117
0.074
0.011
1.252
1.326
N
1
B
B
CD
OE1
GLU
GLU
127
127
0.071
0.011
1.252
1.323
N
1
B
B
CD
OE2
GLU
GLU
225
225
0.072
0.011
1.252
1.324
N
1
B
B
CD
OE1
GLU
GLU
228
228
0.068
0.011
1.252
1.320
N
1
A
B
O
N
SER
ASP
112
111
1.02
1_555
1_455
1
A
B
N
O
GLY
ILE
114
109
1.47
1_555
1_455
1
A
B
CG
ND1
GLU
HIS
117
17
1.63
1_555
1_455
1
A
B
OE1
O
GLN
GLN
43
43
1.65
1_555
1_455
1
A
B
C
N
SER
ASP
112
111
1.68
1_555
1_455
1
A
B
CG
CG
GLU
HIS
117
17
1.69
1_555
1_455
1
A
B
CG
CE1
GLU
HIS
117
17
1.84
1_555
1_455
1
A
B
CB
O
ASP
PRO
111
108
1.89
1_555
1_455
1
A
B
CB
CD2
GLU
HIS
117
17
1.92
1_555
1_455
1
A
B
CG
CD2
GLU
HIS
117
17
1.99
1_555
1_455
1
A
B
O
C
SER
TYR
112
110
2.03
1_555
1_455
1
A
B
CD
O
GLN
GLN
43
43
2.05
1_555
1_455
1
A
B
CA
O
GLY
ILE
114
109
2.06
1_555
1_455
1
A
B
CG
NE2
GLU
HIS
117
17
2.07
1_555
1_455
1
A
B
CB
NE2
GLU
HIS
117
17
2.10
1_555
1_455
1
A
B
O
CA
SER
ASP
112
111
2.12
1_555
1_455
1
A
B
NE2
O
GLN
GLN
43
43
2.12
1_555
1_455
1
A
B
CD
CG
GLU
HIS
117
17
2.12
1_555
1_455
1
A
B
CB
O
SER
ASP
112
111
2.17
1_555
1_455
1
A
GLN
43
72.67
33.63
1
A
GLU
83
-68.11
-70.88
1
A
ILE
84
-36.61
-38.32
1
A
TYR
110
-171.86
122.93
1
A
SER
125
-101.73
61.46
1
A
GLU
142
-119.85
-81.79
1
A
ARG
154
-50.13
-70.05
1
A
VAL
155
-39.38
-73.90
1
A
THR
186
-54.73
-79.11
1
A
VAL
196
-63.93
4.36
1
A
GLN
198
-46.64
170.38
1
A
SER
199
-80.82
-75.83
1
A
SER
248
-17.35
-68.90
1
A
PRO
252
-44.59
-15.58
1
B
GLU
61
-72.85
39.85
1
B
GLU
63
-175.06
71.12
1
B
SER
105
-65.31
28.75
1
B
ASP
111
-166.00
112.20
1
B
LEU
116
-65.59
0.56
1
B
SER
125
-106.28
57.38
1
B
VAL
140
-67.11
-71.86
1
B
GLU
142
-123.50
-69.50
1
B
ARG
182
30.12
35.99
1
B
VAL
196
-68.81
1.83
1
B
SER
199
-83.84
-78.07
1
B
ASP
200
-58.05
29.93
1
B
PRO
252
-67.45
35.80
0.1680000
2.5
30.0
19405
1
2.5
30.0
43
4231
130
0
4058
refinement
TNT
KANAMYCIN NUCLEOTIDYLTRANSFERASE
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
ARG
9
A
ARG
9
HELX_P
A
ASP
30
A
ASP
30
1
1
22
A
GLY
38
A
GLY
38
HELX_P
A
ARG
42
A
ARG
42
1
2
5
A
GLU
82
A
GLU
82
HELX_P
A
SER
90
A
SER
90
1
3
9
A
TRP
96
A
TRP
96
HELX_P
A
PHE
103
A
PHE
103
1
4
8
A
TYR
115
A
TYR
115
HELX_P
A
LYS
124
A
LYS
124
1
5
10
A
ALA
128
A
ALA
128
HELX_P
A
GLU
141
A
GLU
141
1
6
14
A
LEU
143
A
LEU
143
HELX_P
A
GLN
156
A
GLN
156
1
7
14
A
LEU
162
A
LEU
162
HELX_P
A
HIS
181
A
HIS
181
1
8
20
A
VAL
191
A
VAL
191
HELX_P
A
LYS
197
A
LYS
197
1
9
7
A
TYR
205
A
TYR
205
HELX_P
A
SER
214
A
SER
214
1
10
10
A
SER
220
A
SER
220
HELX_P
A
HIS
241
A
HIS
241
1
11
22
B
ARG
9
B
ARG
9
HELX_P
B
ASP
30
B
ASP
30
1
12
22
B
GLY
38
B
GLY
38
HELX_P
B
ARG
42
B
ARG
42
1
13
5
B
GLU
82
B
GLU
82
HELX_P
B
ALA
89
B
ALA
89
1
14
8
B
TRP
96
B
TRP
96
HELX_P
B
PHE
103
B
PHE
103
1
15
8
B
TYR
115
B
TYR
115
HELX_P
B
LYS
124
B
LYS
124
1
16
10
B
ALA
128
B
ALA
128
HELX_P
B
GLU
141
B
GLU
141
1
17
14
B
LEU
143
B
LEU
143
HELX_P
B
GLN
156
B
GLN
156
1
18
14
B
THR
159
B
THR
159
HELX_P
B
HIS
180
B
HIS
180
5
19
22
B
SER
188
B
SER
188
HELX_P
B
LYS
197
B
LYS
197
5
20
10
B
TYR
205
B
TYR
205
HELX_P
B
SER
214
B
SER
214
1
21
10
B
SER
220
B
SER
220
HELX_P
B
HIS
241
B
HIS
241
1
22
22
metalc
2.002
A
GLU
52
A
OE2
GLU
52
1_555
A
MG
603
C
MG
MG
1_555
metalc
2.608
A
GLU
52
A
OE1
GLU
52
1_555
A
MG
603
C
MG
MG
1_555
metalc
2.236
A
APC
556
D
O1G
APC
1_555
A
MG
603
C
MG
MG
1_555
metalc
2.646
A
APC
556
D
O2B
APC
1_555
A
MG
603
C
MG
MG
1_555
metalc
3.018
B
GLU
52
B
OE1
GLU
52
1_555
B
MG
604
F
MG
MG
1_555
metalc
2.579
B
GLU
52
B
OE2
GLU
52
1_555
B
MG
604
F
MG
MG
1_555
metalc
2.321
B
APC
557
G
O1G
APC
1_555
B
MG
604
F
MG
MG
1_555
metalc
2.004
B
APC
557
G
O2B
APC
1_555
B
MG
604
F
MG
MG
1_555
TRANSFERASE
ANTIBIOTIC RESISTANCE, TRANSFERASE, PLASMID
A
GLY
157
A
GLY
157
1
A
PRO
158
A
PRO
158
2.15
B
GLY
157
B
GLY
157
1
B
PRO
158
B
PRO
158
5.32
KANU_STAAU
UNP
1
1
P05057
MNGPIIMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTEEAEFSHEWTTGEWKVEVNFD
SEEILLDYASQVESDWPLTHGQFFSILPIYDSGGYLEKVYQTAKSVEAQTFHDAICALIVEELFEYAGKWRNIRVQGPTT
FLPSLTVQVAMAGAMLIGLHHRICYTTSASVLTEAVKQSDLPSGYDHLCQFVMSGQLSDSEKLLESLENFWNGIQEWTER
HGYIVDVSKRIPF
1
253
1KNY
1
253
P05057
A
1
1
253
1
253
1KNY
1
253
P05057
B
1
1
253
1
ASP
engineered mutation
TYR
80
1KNY
A
P05057
UNP
80
80
2
ASP
engineered mutation
TYR
80
1KNY
B
P05057
UNP
80
80
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLU
63
A
GLU
63
A
THR
69
A
THR
69
A
LYS
74
A
LYS
74
A
SER
81
A
SER
81
A
ILE
51
A
ILE
51
A
MET
57
A
MET
57
A
VAL
31
A
VAL
31
A
TYR
37
A
TYR
37
A
LEU
107
A
LEU
107
A
ASP
111
A
ASP
111
B
GLU
63
B
GLU
63
B
THR
69
B
THR
69
B
LYS
74
B
LYS
74
B
SER
81
B
SER
81
B
ILE
51
B
ILE
51
B
MET
57
B
MET
57
B
VAL
31
B
VAL
31
B
TYR
37
B
TYR
37
B
LEU
107
B
LEU
107
B
ASP
111
B
ASP
111
BINDING SITE FOR RESIDUE MG A 603
A
MG
603
Software
4
BINDING SITE FOR RESIDUE MG B 604
B
MG
604
Software
4
BINDING SITE FOR RESIDUE APC A 556
A
APC
556
Software
19
BINDING SITE FOR RESIDUE APC B 557
B
APC
557
Software
17
BINDING SITE FOR RESIDUE KAN A 558
A
KAN
558
Software
9
BINDING SITE FOR RESIDUE KAN B 559
B
KAN
559
Software
9
A
SER
39
A
SER
39
4
1_555
A
ASP
50
A
ASP
50
4
1_555
A
GLU
52
A
GLU
52
4
1_555
A
APC
556
D
APC
4
1_555
B
SER
39
B
SER
39
4
1_555
B
ASP
50
B
ASP
50
4
1_555
B
GLU
52
B
GLU
52
4
1_555
B
APC
557
G
APC
4
1_555
A
GLY
38
A
GLY
38
19
1_555
A
SER
39
A
SER
39
19
1_555
A
ARG
42
A
ARG
42
19
1_555
A
SER
49
A
SER
49
19
1_555
A
ASP
50
A
ASP
50
19
1_555
A
GLU
52
A
GLU
52
19
1_555
A
LEU
98
A
LEU
98
19
1_555
A
THR
99
A
THR
99
19
1_555
A
GLN
102
A
GLN
102
19
1_555
A
THR
186
A
THR
186
19
1_555
A
THR
187
A
THR
187
19
1_555
A
SER
188
A
SER
188
19
1_555
A
MG
603
C
MG
19
1_555
A
HOH
608
I
HOH
19
1_555
A
HOH
611
I
HOH
19
1_555
A
HOH
631
I
HOH
19
1_555
B
GLU
145
B
GLU
145
19
1_555
B
LYS
149
B
LYS
149
19
1_555
B
KAN
559
H
KAN
19
1_555
A
GLU
145
A
GLU
145
17
1_555
A
LYS
149
A
LYS
149
17
1_555
A
KAN
558
E
KAN
17
1_555
B
TYR
37
B
TYR
37
17
1_555
B
GLY
38
B
GLY
38
17
1_555
B
SER
39
B
SER
39
17
1_555
B
ARG
42
B
ARG
42
17
1_555
B
SER
49
B
SER
49
17
1_555
B
ASP
50
B
ASP
50
17
1_555
B
GLU
52
B
GLU
52
17
1_555
B
LEU
98
B
LEU
98
17
1_555
B
THR
99
B
THR
99
17
1_555
B
THR
186
B
THR
186
17
1_555
B
THR
187
B
THR
187
17
1_555
B
SER
188
B
SER
188
17
1_555
B
MG
604
F
MG
17
1_555
B
HOH
619
J
HOH
17
1_555
A
SER
94
A
SER
94
9
1_555
A
ASP
95
A
ASP
95
9
1_555
A
GLU
141
A
GLU
141
9
1_555
A
GLU
142
A
GLU
142
9
1_555
A
GLU
145
A
GLU
145
9
1_555
B
GLU
67
B
GLU
67
9
1_555
B
GLU
76
B
GLU
76
9
1_555
B
APC
557
G
APC
9
1_555
B
KAN
559
H
KAN
9
1_555
A
GLU
67
A
GLU
67
9
1_555
A
LYS
74
A
LYS
74
9
1_555
A
GLU
76
A
GLU
76
9
1_555
A
APC
556
D
APC
9
1_555
A
KAN
558
E
KAN
9
1_555
B
SER
94
B
SER
94
9
1_555
B
ASP
95
B
ASP
95
9
1_555
B
GLU
141
B
GLU
141
9
1_555
B
GLU
145
B
GLU
145
9
1_555
19
P 21 21 21