0.010101
0.005832
0.000000
0.000000
0.011664
0.000000
0.000000
0.000000
0.005651
0.00000
0.00000
0.00000
Levdikov, V.
Blagova, L.
Bose, N.
Momany, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
98.997
98.997
176.966
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H14 N2 O2
146.188
D-LYSINE
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C8 H10 N O6 P
247.142
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
R
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
S
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
Y
297
N
N
Y
298
N
C
N
299
N
C
Y
300
N
C
N
301
N
O
Y
302
N
C
N
303
N
C
N
304
N
O
Y
305
N
C
Y
306
N
C
N
307
N
C
N
308
N
O
N
309
N
P
N
310
N
O
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
doub
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
Y
291
N
doub
N
292
N
sing
N
293
N
sing
Y
294
N
sing
N
295
N
doub
N
296
N
sing
Y
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
To be Published
0353
Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation
10.2210/pdb1ko0/pdb
pdb_00001ko0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
98
1
IMAGE PLATE
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
46920.816
Diaminopimelate decarboxylase
4.1.1.20
1
man
polymer
247.142
PYRIDOXAL-5'-PHOSPHATE
1
syn
non-polymer
147.195
LYSINE
1
syn
non-polymer
146.188
D-LYSINE
1
syn
non-polymer
18.015
water
384
nat
water
DAP DECARBOXYLASE
no
no
MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEI
ERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVD
TEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL
AADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNG
QARLIRRRQTIEELLALELLHHHHH
MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEI
ERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVD
TEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL
AADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNG
QARLIRRRQTIEELLALELLHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
lysA
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pCM1
1
2.67
53.87
VAPOR DIFFUSION, HANGING DROP
6.0
Lithium sulfate, MES, pyridoxal-5'-phosphate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-11-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Native diaminopimelate decarboxylase with MES bound in active site
HETEROGEN
THE PLP LIGAND, RESIDUE 540, ALTERNATE
CONFORMATIONS B AND C, ARE LINKED TO L-LYSINE,
RESIDUE 541, ALTERNATE CONFORMATION A, AND
D-LYSINE, DLY, RESIDUE 542, ALTERNATE CONFORMATION B.
THE D-LYSINE INTERACTS THROUGH THE N AT THE D-CENTER,
AND THE L-LYSINE INTERACTS THROUGH THE NZ ATOM, WITH
THE L-CHIRAL CENTER INTERACTING WITH OTHER RESIDUES.
THE PLP LIGAND, ALTERNATE CONFORMATION A, IS
LINKED TO THE PROTEIN AT LYS A 54.
RCSB
Y
RCSB
2001-12-19
REL
PLP
PYRIDOXAL-5'-PHOSPHATE
LYS
LYSINE
DLY
D-LYSINE
HOH
water
1KNW
PDB entry 1KNW
PDB
experimental model
PLP
540
2
PLP
PLP
540
A
LYS
541
3
LYS
LYS
541
A
DLY
542
4
DLY
DLY
542
A
HOH
1
5
HOH
HOH
543
A
HOH
2
5
HOH
HOH
544
A
HOH
3
5
HOH
HOH
545
A
HOH
4
5
HOH
HOH
546
A
HOH
5
5
HOH
HOH
547
A
HOH
6
5
HOH
HOH
548
A
HOH
7
5
HOH
HOH
549
A
HOH
8
5
HOH
HOH
550
A
HOH
9
5
HOH
HOH
551
A
HOH
10
5
HOH
HOH
552
A
HOH
11
5
HOH
HOH
553
A
HOH
12
5
HOH
HOH
554
A
HOH
13
5
HOH
HOH
555
A
HOH
14
5
HOH
HOH
556
A
HOH
15
5
HOH
HOH
557
A
HOH
16
5
HOH
HOH
558
A
HOH
17
5
HOH
HOH
559
A
HOH
18
5
HOH
HOH
560
A
HOH
19
5
HOH
HOH
561
A
HOH
20
5
HOH
HOH
562
A
HOH
21
5
HOH
HOH
563
A
HOH
22
5
HOH
HOH
564
A
HOH
23
5
HOH
HOH
565
A
HOH
24
5
HOH
HOH
566
A
HOH
25
5
HOH
HOH
567
A
HOH
26
5
HOH
HOH
568
A
HOH
27
5
HOH
HOH
569
A
HOH
28
5
HOH
HOH
570
A
HOH
29
5
HOH
HOH
571
A
HOH
30
5
HOH
HOH
572
A
HOH
31
5
HOH
HOH
573
A
HOH
32
5
HOH
HOH
574
A
HOH
33
5
HOH
HOH
575
A
HOH
34
5
HOH
HOH
576
A
HOH
35
5
HOH
HOH
577
A
HOH
36
5
HOH
HOH
578
A
HOH
37
5
HOH
HOH
579
A
HOH
38
5
HOH
HOH
580
A
HOH
39
5
HOH
HOH
581
A
HOH
40
5
HOH
HOH
582
A
HOH
41
5
HOH
HOH
583
A
HOH
42
5
HOH
HOH
584
A
HOH
43
5
HOH
HOH
585
A
HOH
44
5
HOH
HOH
586
A
HOH
45
5
HOH
HOH
587
A
HOH
46
5
HOH
HOH
588
A
HOH
47
5
HOH
HOH
589
A
HOH
48
5
HOH
HOH
590
A
HOH
49
5
HOH
HOH
591
A
HOH
50
5
HOH
HOH
592
A
HOH
51
5
HOH
HOH
593
A
HOH
52
5
HOH
HOH
594
A
HOH
53
5
HOH
HOH
595
A
HOH
54
5
HOH
HOH
596
A
HOH
55
5
HOH
HOH
597
A
HOH
56
5
HOH
HOH
598
A
HOH
57
5
HOH
HOH
599
A
HOH
58
5
HOH
HOH
600
A
HOH
59
5
HOH
HOH
601
A
HOH
60
5
HOH
HOH
602
A
HOH
61
5
HOH
HOH
603
A
HOH
62
5
HOH
HOH
604
A
HOH
63
5
HOH
HOH
605
A
HOH
64
5
HOH
HOH
606
A
HOH
65
5
HOH
HOH
607
A
HOH
66
5
HOH
HOH
608
A
HOH
67
5
HOH
HOH
609
A
HOH
68
5
HOH
HOH
610
A
HOH
69
5
HOH
HOH
611
A
HOH
70
5
HOH
HOH
612
A
HOH
71
5
HOH
HOH
613
A
HOH
72
5
HOH
HOH
614
A
HOH
73
5
HOH
HOH
615
A
HOH
74
5
HOH
HOH
616
A
HOH
75
5
HOH
HOH
617
A
HOH
76
5
HOH
HOH
618
A
HOH
77
5
HOH
HOH
619
A
HOH
78
5
HOH
HOH
620
A
HOH
79
5
HOH
HOH
621
A
HOH
80
5
HOH
HOH
622
A
HOH
81
5
HOH
HOH
623
A
HOH
82
5
HOH
HOH
624
A
HOH
83
5
HOH
HOH
625
A
HOH
84
5
HOH
HOH
626
A
HOH
85
5
HOH
HOH
627
A
HOH
86
5
HOH
HOH
628
A
HOH
87
5
HOH
HOH
629
A
HOH
88
5
HOH
HOH
630
A
HOH
89
5
HOH
HOH
631
A
HOH
90
5
HOH
HOH
632
A
HOH
91
5
HOH
HOH
633
A
HOH
92
5
HOH
HOH
634
A
HOH
93
5
HOH
HOH
635
A
HOH
94
5
HOH
HOH
636
A
HOH
95
5
HOH
HOH
637
A
HOH
96
5
HOH
HOH
638
A
HOH
97
5
HOH
HOH
639
A
HOH
98
5
HOH
HOH
640
A
HOH
99
5
HOH
HOH
641
A
HOH
100
5
HOH
HOH
642
A
HOH
101
5
HOH
HOH
643
A
HOH
102
5
HOH
HOH
644
A
HOH
103
5
HOH
HOH
645
A
HOH
104
5
HOH
HOH
646
A
HOH
105
5
HOH
HOH
647
A
HOH
106
5
HOH
HOH
648
A
HOH
107
5
HOH
HOH
649
A
HOH
108
5
HOH
HOH
650
A
HOH
109
5
HOH
HOH
651
A
HOH
110
5
HOH
HOH
652
A
HOH
111
5
HOH
HOH
653
A
HOH
112
5
HOH
HOH
654
A
HOH
113
5
HOH
HOH
655
A
HOH
114
5
HOH
HOH
656
A
HOH
115
5
HOH
HOH
657
A
HOH
116
5
HOH
HOH
658
A
HOH
117
5
HOH
HOH
659
A
HOH
118
5
HOH
HOH
660
A
HOH
119
5
HOH
HOH
661
A
HOH
120
5
HOH
HOH
662
A
HOH
121
5
HOH
HOH
663
A
HOH
122
5
HOH
HOH
664
A
HOH
123
5
HOH
HOH
665
A
HOH
124
5
HOH
HOH
666
A
HOH
125
5
HOH
HOH
667
A
HOH
126
5
HOH
HOH
668
A
HOH
127
5
HOH
HOH
669
A
HOH
128
5
HOH
HOH
670
A
HOH
129
5
HOH
HOH
671
A
HOH
130
5
HOH
HOH
672
A
HOH
131
5
HOH
HOH
673
A
HOH
132
5
HOH
HOH
674
A
HOH
133
5
HOH
HOH
675
A
HOH
134
5
HOH
HOH
676
A
HOH
135
5
HOH
HOH
677
A
HOH
136
5
HOH
HOH
678
A
HOH
137
5
HOH
HOH
679
A
HOH
138
5
HOH
HOH
680
A
HOH
139
5
HOH
HOH
681
A
HOH
140
5
HOH
HOH
682
A
HOH
141
5
HOH
HOH
683
A
HOH
142
5
HOH
HOH
684
A
HOH
143
5
HOH
HOH
685
A
HOH
144
5
HOH
HOH
686
A
HOH
145
5
HOH
HOH
687
A
HOH
146
5
HOH
HOH
688
A
HOH
147
5
HOH
HOH
689
A
HOH
148
5
HOH
HOH
690
A
HOH
149
5
HOH
HOH
691
A
HOH
150
5
HOH
HOH
692
A
HOH
151
5
HOH
HOH
693
A
HOH
152
5
HOH
HOH
694
A
HOH
153
5
HOH
HOH
695
A
HOH
154
5
HOH
HOH
696
A
HOH
155
5
HOH
HOH
697
A
HOH
156
5
HOH
HOH
698
A
HOH
157
5
HOH
HOH
699
A
HOH
158
5
HOH
HOH
700
A
HOH
159
5
HOH
HOH
701
A
HOH
160
5
HOH
HOH
702
A
HOH
161
5
HOH
HOH
703
A
HOH
162
5
HOH
HOH
704
A
HOH
163
5
HOH
HOH
705
A
HOH
164
5
HOH
HOH
706
A
HOH
165
5
HOH
HOH
707
A
HOH
166
5
HOH
HOH
708
A
HOH
167
5
HOH
HOH
709
A
HOH
168
5
HOH
HOH
710
A
HOH
169
5
HOH
HOH
711
A
HOH
170
5
HOH
HOH
712
A
HOH
171
5
HOH
HOH
713
A
HOH
172
5
HOH
HOH
714
A
HOH
173
5
HOH
HOH
715
A
HOH
174
5
HOH
HOH
716
A
HOH
175
5
HOH
HOH
717
A
HOH
176
5
HOH
HOH
718
A
HOH
177
5
HOH
HOH
719
A
HOH
178
5
HOH
HOH
720
A
HOH
179
5
HOH
HOH
721
A
HOH
180
5
HOH
HOH
722
A
HOH
181
5
HOH
HOH
723
A
HOH
182
5
HOH
HOH
724
A
HOH
183
5
HOH
HOH
725
A
HOH
184
5
HOH
HOH
726
A
HOH
185
5
HOH
HOH
727
A
HOH
186
5
HOH
HOH
728
A
HOH
187
5
HOH
HOH
729
A
HOH
188
5
HOH
HOH
730
A
HOH
189
5
HOH
HOH
731
A
HOH
190
5
HOH
HOH
732
A
HOH
191
5
HOH
HOH
733
A
HOH
192
5
HOH
HOH
734
A
HOH
193
5
HOH
HOH
735
A
HOH
194
5
HOH
HOH
736
A
HOH
195
5
HOH
HOH
737
A
HOH
196
5
HOH
HOH
738
A
HOH
197
5
HOH
HOH
739
A
HOH
198
5
HOH
HOH
740
A
HOH
199
5
HOH
HOH
741
A
HOH
200
5
HOH
HOH
742
A
HOH
201
5
HOH
HOH
743
A
HOH
202
5
HOH
HOH
744
A
HOH
203
5
HOH
HOH
745
A
HOH
204
5
HOH
HOH
746
A
HOH
205
5
HOH
HOH
747
A
HOH
206
5
HOH
HOH
748
A
HOH
207
5
HOH
HOH
749
A
HOH
208
5
HOH
HOH
750
A
HOH
209
5
HOH
HOH
751
A
HOH
210
5
HOH
HOH
752
A
HOH
211
5
HOH
HOH
753
A
HOH
212
5
HOH
HOH
754
A
HOH
213
5
HOH
HOH
755
A
HOH
214
5
HOH
HOH
756
A
HOH
215
5
HOH
HOH
757
A
HOH
216
5
HOH
HOH
758
A
HOH
217
5
HOH
HOH
759
A
HOH
218
5
HOH
HOH
760
A
HOH
219
5
HOH
HOH
761
A
HOH
220
5
HOH
HOH
762
A
HOH
221
5
HOH
HOH
763
A
HOH
222
5
HOH
HOH
764
A
HOH
223
5
HOH
HOH
765
A
HOH
224
5
HOH
HOH
766
A
HOH
225
5
HOH
HOH
767
A
HOH
226
5
HOH
HOH
768
A
HOH
227
5
HOH
HOH
769
A
HOH
228
5
HOH
HOH
770
A
HOH
229
5
HOH
HOH
771
A
HOH
230
5
HOH
HOH
772
A
HOH
231
5
HOH
HOH
773
A
HOH
232
5
HOH
HOH
774
A
HOH
233
5
HOH
HOH
775
A
HOH
234
5
HOH
HOH
776
A
HOH
235
5
HOH
HOH
777
A
HOH
236
5
HOH
HOH
778
A
HOH
237
5
HOH
HOH
779
A
HOH
238
5
HOH
HOH
780
A
HOH
239
5
HOH
HOH
781
A
HOH
240
5
HOH
HOH
782
A
HOH
241
5
HOH
HOH
783
A
HOH
242
5
HOH
HOH
784
A
HOH
243
5
HOH
HOH
785
A
HOH
244
5
HOH
HOH
786
A
HOH
245
5
HOH
HOH
787
A
HOH
246
5
HOH
HOH
788
A
HOH
247
5
HOH
HOH
789
A
HOH
248
5
HOH
HOH
790
A
HOH
249
5
HOH
HOH
791
A
HOH
250
5
HOH
HOH
792
A
HOH
251
5
HOH
HOH
793
A
HOH
252
5
HOH
HOH
794
A
HOH
253
5
HOH
HOH
795
A
HOH
254
5
HOH
HOH
796
A
HOH
255
5
HOH
HOH
797
A
HOH
256
5
HOH
HOH
798
A
HOH
257
5
HOH
HOH
799
A
HOH
258
5
HOH
HOH
800
A
HOH
259
5
HOH
HOH
801
A
HOH
260
5
HOH
HOH
802
A
HOH
261
5
HOH
HOH
803
A
HOH
262
5
HOH
HOH
804
A
HOH
263
5
HOH
HOH
805
A
HOH
264
5
HOH
HOH
806
A
HOH
265
5
HOH
HOH
807
A
HOH
266
5
HOH
HOH
808
A
HOH
267
5
HOH
HOH
809
A
HOH
268
5
HOH
HOH
810
A
HOH
269
5
HOH
HOH
811
A
HOH
270
5
HOH
HOH
812
A
HOH
271
5
HOH
HOH
813
A
HOH
272
5
HOH
HOH
814
A
HOH
273
5
HOH
HOH
815
A
HOH
274
5
HOH
HOH
816
A
HOH
275
5
HOH
HOH
817
A
HOH
276
5
HOH
HOH
818
A
HOH
277
5
HOH
HOH
819
A
HOH
278
5
HOH
HOH
820
A
HOH
279
5
HOH
HOH
821
A
HOH
280
5
HOH
HOH
822
A
HOH
281
5
HOH
HOH
823
A
HOH
282
5
HOH
HOH
824
A
HOH
283
5
HOH
HOH
825
A
HOH
284
5
HOH
HOH
826
A
HOH
285
5
HOH
HOH
827
A
HOH
286
5
HOH
HOH
828
A
HOH
287
5
HOH
HOH
829
A
HOH
288
5
HOH
HOH
830
A
HOH
289
5
HOH
HOH
831
A
HOH
290
5
HOH
HOH
832
A
HOH
291
5
HOH
HOH
833
A
HOH
292
5
HOH
HOH
834
A
HOH
293
5
HOH
HOH
835
A
HOH
294
5
HOH
HOH
836
A
HOH
295
5
HOH
HOH
837
A
HOH
296
5
HOH
HOH
838
A
HOH
297
5
HOH
HOH
839
A
HOH
298
5
HOH
HOH
840
A
HOH
299
5
HOH
HOH
841
A
HOH
300
5
HOH
HOH
842
A
HOH
301
5
HOH
HOH
843
A
HOH
302
5
HOH
HOH
844
A
HOH
303
5
HOH
HOH
845
A
HOH
304
5
HOH
HOH
846
A
HOH
305
5
HOH
HOH
847
A
HOH
306
5
HOH
HOH
848
A
HOH
307
5
HOH
HOH
849
A
HOH
308
5
HOH
HOH
850
A
HOH
309
5
HOH
HOH
851
A
HOH
310
5
HOH
HOH
852
A
HOH
311
5
HOH
HOH
853
A
HOH
312
5
HOH
HOH
854
A
HOH
313
5
HOH
HOH
855
A
HOH
314
5
HOH
HOH
856
A
HOH
315
5
HOH
HOH
857
A
HOH
316
5
HOH
HOH
858
A
HOH
317
5
HOH
HOH
859
A
HOH
318
5
HOH
HOH
860
A
HOH
319
5
HOH
HOH
861
A
HOH
320
5
HOH
HOH
862
A
HOH
321
5
HOH
HOH
863
A
HOH
322
5
HOH
HOH
864
A
HOH
323
5
HOH
HOH
865
A
HOH
324
5
HOH
HOH
866
A
HOH
325
5
HOH
HOH
867
A
HOH
326
5
HOH
HOH
868
A
HOH
327
5
HOH
HOH
869
A
HOH
328
5
HOH
HOH
870
A
HOH
329
5
HOH
HOH
871
A
HOH
330
5
HOH
HOH
872
A
HOH
331
5
HOH
HOH
873
A
HOH
332
5
HOH
HOH
874
A
HOH
333
5
HOH
HOH
875
A
HOH
334
5
HOH
HOH
876
A
HOH
335
5
HOH
HOH
877
A
HOH
336
5
HOH
HOH
878
A
HOH
337
5
HOH
HOH
879
A
HOH
338
5
HOH
HOH
880
A
HOH
339
5
HOH
HOH
881
A
HOH
340
5
HOH
HOH
882
A
HOH
341
5
HOH
HOH
883
A
HOH
342
5
HOH
HOH
884
A
HOH
343
5
HOH
HOH
885
A
HOH
344
5
HOH
HOH
886
A
HOH
345
5
HOH
HOH
887
A
HOH
346
5
HOH
HOH
888
A
HOH
347
5
HOH
HOH
889
A
HOH
348
5
HOH
HOH
890
A
HOH
349
5
HOH
HOH
891
A
HOH
350
5
HOH
HOH
892
A
HOH
351
5
HOH
HOH
893
A
HOH
352
5
HOH
HOH
894
A
HOH
353
5
HOH
HOH
895
A
HOH
354
5
HOH
HOH
896
A
HOH
355
5
HOH
HOH
897
A
HOH
356
5
HOH
HOH
898
A
HOH
357
5
HOH
HOH
899
A
HOH
358
5
HOH
HOH
900
A
HOH
359
5
HOH
HOH
901
A
HOH
360
5
HOH
HOH
902
A
HOH
361
5
HOH
HOH
903
A
HOH
362
5
HOH
HOH
904
A
HOH
363
5
HOH
HOH
905
A
HOH
364
5
HOH
HOH
906
A
HOH
365
5
HOH
HOH
907
A
HOH
366
5
HOH
HOH
908
A
HOH
367
5
HOH
HOH
909
A
HOH
368
5
HOH
HOH
910
A
HOH
369
5
HOH
HOH
911
A
HOH
370
5
HOH
HOH
912
A
HOH
371
5
HOH
HOH
913
A
HOH
372
5
HOH
HOH
914
A
HOH
373
5
HOH
HOH
915
A
HOH
374
5
HOH
HOH
916
A
HOH
375
5
HOH
HOH
917
A
HOH
376
5
HOH
HOH
918
A
HOH
377
5
HOH
HOH
919
A
HOH
378
5
HOH
HOH
920
A
HOH
379
5
HOH
HOH
921
A
HOH
380
5
HOH
HOH
922
A
HOH
381
5
HOH
HOH
923
A
HOH
382
5
HOH
HOH
924
A
HOH
383
5
HOH
HOH
925
A
HOH
384
5
HOH
HOH
926
A
n
1
1
A
PRO
2
n
2
PRO
2
A
HIS
3
n
3
HIS
3
A
SER
4
n
4
SER
4
A
LEU
5
n
5
LEU
5
A
PHE
6
n
6
PHE
6
A
SER
7
n
7
SER
7
A
THR
8
n
8
THR
8
A
ASP
9
n
9
ASP
9
A
THR
10
n
10
THR
10
A
ASP
11
n
11
ASP
11
A
LEU
12
n
12
LEU
12
A
THR
13
n
13
THR
13
A
ALA
14
n
14
ALA
14
A
GLU
15
n
15
GLU
15
A
ASN
16
n
16
ASN
16
A
LEU
17
n
17
LEU
17
A
LEU
18
n
18
LEU
18
A
ARG
19
n
19
ARG
19
A
LEU
20
n
20
LEU
20
A
PRO
21
n
21
PRO
21
A
ALA
22
n
22
ALA
22
A
GLU
23
n
23
GLU
23
A
PHE
24
n
24
PHE
24
A
GLY
25
n
25
GLY
25
A
CYS
26
n
26
CYS
26
A
PRO
27
n
27
PRO
27
A
VAL
28
n
28
VAL
28
A
TRP
29
n
29
TRP
29
A
VAL
30
n
30
VAL
30
A
TYR
31
n
31
TYR
31
A
ASP
32
n
32
ASP
32
A
ALA
33
n
33
ALA
33
A
GLN
34
n
34
GLN
34
A
ILE
35
n
35
ILE
35
A
ILE
36
n
36
ILE
36
A
ARG
37
n
37
ARG
37
A
ARG
38
n
38
ARG
38
A
GLN
39
n
39
GLN
39
A
ILE
40
n
40
ILE
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LEU
43
n
43
LEU
43
A
LYS
44
n
44
LYS
44
A
GLN
45
n
45
GLN
45
A
PHE
46
n
46
PHE
46
A
ASP
47
n
47
ASP
47
A
VAL
48
n
48
VAL
48
A
VAL
49
n
49
VAL
49
A
ARG
50
n
50
ARG
50
A
PHE
51
n
51
PHE
51
A
ALA
52
n
52
ALA
52
A
GLN
53
n
53
GLN
53
A
LYS
54
n
54
LYS
54
A
ALA
55
n
55
ALA
55
A
CYS
56
n
56
CYS
56
A
SER
57
n
57
SER
57
A
ASN
58
n
58
ASN
58
A
ILE
59
n
59
ILE
59
A
HIS
60
n
60
HIS
60
A
ILE
61
n
61
ILE
61
A
LEU
62
n
62
LEU
62
A
ARG
63
n
63
ARG
63
A
LEU
64
n
64
LEU
64
A
MET
65
n
65
MET
65
A
ARG
66
n
66
ARG
66
A
GLU
67
n
67
GLU
67
A
GLN
68
n
68
GLN
68
A
GLY
69
n
69
GLY
69
A
VAL
70
n
70
VAL
70
A
LYS
71
n
71
LYS
71
A
VAL
72
n
72
VAL
72
A
ASP
73
n
73
ASP
73
A
SER
74
n
74
SER
74
A
VAL
75
n
75
VAL
75
A
SER
76
n
76
SER
76
A
LEU
77
n
77
LEU
77
A
GLY
78
n
78
GLY
78
A
GLU
79
n
79
GLU
79
A
ILE
80
n
80
ILE
80
A
GLU
81
n
81
GLU
81
A
ARG
82
n
82
ARG
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
ALA
85
n
85
ALA
85
A
ALA
86
n
86
ALA
86
A
GLY
87
n
87
GLY
87
A
TYR
88
n
88
TYR
88
A
ASN
89
n
89
ASN
89
A
PRO
90
n
90
PRO
90
A
GLN
91
n
91
GLN
91
A
THR
92
n
92
THR
92
A
HIS
93
n
93
HIS
93
A
PRO
94
n
94
PRO
94
A
ASP
95
n
95
ASP
95
A
ASP
96
n
96
ASP
96
A
ILE
97
n
97
ILE
97
A
VAL
98
n
98
VAL
98
A
PHE
99
n
99
PHE
99
A
THR
100
n
100
THR
100
A
ALA
101
n
101
ALA
101
A
ASP
102
n
102
ASP
102
A
VAL
103
n
103
VAL
103
A
ILE
104
n
104
ILE
104
A
ASP
105
n
105
ASP
105
A
GLN
106
n
106
GLN
106
A
ALA
107
n
107
ALA
107
A
THR
108
n
108
THR
108
A
LEU
109
n
109
LEU
109
A
GLU
110
n
110
GLU
110
A
ARG
111
n
111
ARG
111
A
VAL
112
n
112
VAL
112
A
SER
113
n
113
SER
113
A
GLU
114
n
114
GLU
114
A
LEU
115
n
115
LEU
115
A
GLN
116
n
116
GLN
116
A
ILE
117
n
117
ILE
117
A
PRO
118
n
118
PRO
118
A
VAL
119
n
119
VAL
119
A
ASN
120
n
120
ASN
120
A
ALA
121
n
121
ALA
121
A
GLY
122
n
122
GLY
122
A
SER
123
n
123
SER
123
A
VAL
124
n
124
VAL
124
A
ASP
125
n
125
ASP
125
A
MET
126
n
126
MET
126
A
LEU
127
n
127
LEU
127
A
ASP
128
n
128
ASP
128
A
GLN
129
n
129
GLN
129
A
LEU
130
n
130
LEU
130
A
GLY
131
n
131
GLY
131
A
GLN
132
n
132
GLN
132
A
VAL
133
n
133
VAL
133
A
SER
134
n
134
SER
134
A
PRO
135
n
135
PRO
135
A
GLY
136
n
136
GLY
136
A
HIS
137
n
137
HIS
137
A
ARG
138
n
138
ARG
138
A
VAL
139
n
139
VAL
139
A
TRP
140
n
140
TRP
140
A
LEU
141
n
141
LEU
141
A
ARG
142
n
142
ARG
142
A
VAL
143
n
143
VAL
143
A
ASN
144
n
144
ASN
144
A
PRO
145
n
145
PRO
145
A
GLY
146
n
146
GLY
146
A
PHE
147
n
147
PHE
147
A
GLY
148
n
148
GLY
148
A
HIS
149
n
149
HIS
149
A
GLY
150
n
150
GLY
150
A
HIS
151
n
151
HIS
151
A
SER
152
n
152
SER
152
A
GLN
153
n
153
GLN
153
A
LYS
154
n
154
LYS
154
A
THR
155
n
155
THR
155
A
ASN
156
n
156
ASN
156
A
THR
157
n
157
THR
157
A
GLY
158
n
158
GLY
158
A
GLY
159
n
159
GLY
159
A
GLU
160
n
160
GLU
160
A
ASN
161
n
161
ASN
161
A
SER
162
n
162
SER
162
A
LYS
163
n
163
LYS
163
A
HIS
164
n
164
HIS
164
A
GLY
165
n
165
GLY
165
A
ILE
166
n
166
ILE
166
A
TRP
167
n
167
TRP
167
A
TYR
168
n
168
TYR
168
A
THR
169
n
169
THR
169
A
ASP
170
n
170
ASP
170
A
LEU
171
n
171
LEU
171
A
PRO
172
n
172
PRO
172
A
ALA
173
n
173
ALA
173
A
ALA
174
n
174
ALA
174
A
LEU
175
n
175
LEU
175
A
ASP
176
n
176
ASP
176
A
VAL
177
n
177
VAL
177
A
ILE
178
n
178
ILE
178
A
GLN
179
n
179
GLN
179
A
ARG
180
n
180
ARG
180
A
HIS
181
n
181
HIS
181
A
HIS
182
n
182
HIS
182
A
LEU
183
n
183
LEU
183
A
GLN
184
n
184
GLN
184
A
LEU
185
n
185
LEU
185
A
VAL
186
n
186
VAL
186
A
GLY
187
n
187
GLY
187
A
ILE
188
n
188
ILE
188
A
HIS
189
n
189
HIS
189
A
MET
190
n
190
MET
190
A
HIS
191
n
191
HIS
191
A
ILE
192
n
192
ILE
192
A
GLY
193
n
193
GLY
193
A
SER
194
n
194
SER
194
A
GLY
195
n
195
GLY
195
A
VAL
196
n
196
VAL
196
A
ASP
197
n
197
ASP
197
A
TYR
198
n
198
TYR
198
A
ALA
199
n
199
ALA
199
A
HIS
200
n
200
HIS
200
A
LEU
201
n
201
LEU
201
A
GLU
202
n
202
GLU
202
A
GLN
203
n
203
GLN
203
A
VAL
204
n
204
VAL
204
A
CYS
205
n
205
CYS
205
A
GLY
206
n
206
GLY
206
A
ALA
207
n
207
ALA
207
A
MET
208
n
208
MET
208
A
VAL
209
n
209
VAL
209
A
ARG
210
n
210
ARG
210
A
GLN
211
n
211
GLN
211
A
VAL
212
n
212
VAL
212
A
ILE
213
n
213
ILE
213
A
GLU
214
n
214
GLU
214
A
PHE
215
n
215
PHE
215
A
GLY
216
n
216
GLY
216
A
GLN
217
n
217
GLN
217
A
ASP
218
n
218
ASP
218
A
LEU
219
n
219
LEU
219
A
GLN
220
n
220
GLN
220
A
ALA
221
n
221
ALA
221
A
ILE
222
n
222
ILE
222
A
SER
223
n
223
SER
223
A
ALA
224
n
224
ALA
224
A
GLY
225
n
225
GLY
225
A
GLY
226
n
226
GLY
226
A
GLY
227
n
227
GLY
227
A
LEU
228
n
228
LEU
228
A
SER
229
n
229
SER
229
A
VAL
230
n
230
VAL
230
A
PRO
231
n
231
PRO
231
A
TYR
232
n
232
TYR
232
A
GLN
233
n
233
GLN
233
A
GLN
234
n
234
GLN
234
A
GLY
235
n
235
GLY
235
A
GLU
236
n
236
GLU
236
A
GLU
237
n
237
GLU
237
A
ALA
238
n
238
ALA
238
A
VAL
239
n
239
VAL
239
A
ASP
240
n
240
ASP
240
A
THR
241
n
241
THR
241
A
GLU
242
n
242
GLU
242
A
HIS
243
n
243
HIS
243
A
TYR
244
n
244
TYR
244
A
TYR
245
n
245
TYR
245
A
GLY
246
n
246
GLY
246
A
LEU
247
n
247
LEU
247
A
TRP
248
n
248
TRP
248
A
ASN
249
n
249
ASN
249
A
ALA
250
n
250
ALA
250
A
ALA
251
n
251
ALA
251
A
ARG
252
n
252
ARG
252
A
GLU
253
n
253
GLU
253
A
GLN
254
n
254
GLN
254
A
ILE
255
n
255
ILE
255
A
ALA
256
n
256
ALA
256
A
ARG
257
n
257
ARG
257
A
HIS
258
n
258
HIS
258
A
LEU
259
n
259
LEU
259
A
GLY
260
n
260
GLY
260
A
HIS
261
n
261
HIS
261
A
PRO
262
n
262
PRO
262
A
VAL
263
n
263
VAL
263
A
LYS
264
n
264
LYS
264
A
LEU
265
n
265
LEU
265
A
GLU
266
n
266
GLU
266
A
ILE
267
n
267
ILE
267
A
GLU
268
n
268
GLU
268
A
PRO
269
n
269
PRO
269
A
GLY
270
n
270
GLY
270
A
ARG
271
n
271
ARG
271
A
PHE
272
n
272
PHE
272
A
LEU
273
n
273
LEU
273
A
VAL
274
n
274
VAL
274
A
ALA
275
n
275
ALA
275
A
GLN
276
n
276
GLN
276
A
SER
277
n
277
SER
277
A
GLY
278
n
278
GLY
278
A
VAL
279
n
279
VAL
279
A
LEU
280
n
280
LEU
280
A
ILE
281
n
281
ILE
281
A
THR
282
n
282
THR
282
A
GLN
283
n
283
GLN
283
A
VAL
284
n
284
VAL
284
A
ARG
285
n
285
ARG
285
A
SER
286
n
286
SER
286
A
VAL
287
n
287
VAL
287
A
LYS
288
n
288
LYS
288
A
GLN
289
n
289
GLN
289
A
MET
290
n
290
MET
290
A
GLY
291
n
291
GLY
291
A
SER
292
n
292
SER
292
A
ARG
293
n
293
ARG
293
A
HIS
294
n
294
HIS
294
A
PHE
295
n
295
PHE
295
A
VAL
296
n
296
VAL
296
A
LEU
297
n
297
LEU
297
A
VAL
298
n
298
VAL
298
A
ASP
299
n
299
ASP
299
A
ALA
300
n
300
ALA
300
A
GLY
301
n
301
GLY
301
A
PHE
302
n
302
PHE
302
A
ASN
303
n
303
ASN
303
A
ASP
304
n
304
ASP
304
A
LEU
305
n
305
LEU
305
A
MET
306
n
306
MET
306
A
ARG
307
n
307
ARG
307
A
PRO
308
n
308
PRO
308
A
ALA
309
n
309
ALA
309
A
MET
310
n
310
MET
310
A
TYR
311
n
311
TYR
311
A
GLY
312
n
312
GLY
312
A
SER
313
n
313
SER
313
A
TYR
314
n
314
TYR
314
A
HIS
315
n
315
HIS
315
A
HIS
316
n
316
HIS
316
A
ILE
317
n
317
ILE
317
A
SER
318
n
318
SER
318
A
ALA
319
n
319
ALA
319
A
LEU
320
n
320
LEU
320
A
ALA
321
n
321
ALA
321
A
ALA
322
n
322
ALA
322
A
ASP
323
n
323
ASP
323
A
GLY
324
n
324
GLY
324
A
ARG
325
n
325
ARG
325
A
SER
326
n
326
SER
326
A
LEU
327
n
327
LEU
327
A
GLU
328
n
328
GLU
328
A
HIS
329
n
329
HIS
329
A
ALA
330
n
330
ALA
330
A
PRO
331
n
331
PRO
331
A
THR
332
n
332
THR
332
A
VAL
333
n
333
VAL
333
A
GLU
334
n
334
GLU
334
A
THR
335
n
335
THR
335
A
VAL
336
n
336
VAL
336
A
VAL
337
n
337
VAL
337
A
ALA
338
n
338
ALA
338
A
GLY
339
n
339
GLY
339
A
PRO
340
n
340
PRO
340
A
LEU
341
n
341
LEU
341
A
CYS
342
n
342
CYS
342
A
GLU
343
n
343
GLU
343
A
SER
344
n
344
SER
344
A
GLY
345
n
345
GLY
345
A
ASP
346
n
346
ASP
346
A
VAL
347
n
347
VAL
347
A
PHE
348
n
348
PHE
348
A
THR
349
n
349
THR
349
A
GLN
350
n
350
GLN
350
A
GLN
351
n
351
GLN
351
A
GLU
352
n
352
GLU
352
A
GLY
353
n
353
GLY
353
A
GLY
354
n
354
GLY
354
A
ASN
355
n
355
ASN
355
A
VAL
356
n
356
VAL
356
A
GLU
357
n
357
GLU
357
A
THR
358
n
358
THR
358
A
ARG
359
n
359
ARG
359
A
ALA
360
n
360
ALA
360
A
LEU
361
n
361
LEU
361
A
PRO
362
n
362
PRO
362
A
GLU
363
n
363
GLU
363
A
VAL
364
n
364
VAL
364
A
LYS
365
n
365
LYS
365
A
ALA
366
n
366
ALA
366
A
GLY
367
n
367
GLY
367
A
ASP
368
n
368
ASP
368
A
TYR
369
n
369
TYR
369
A
LEU
370
n
370
LEU
370
A
VAL
371
n
371
VAL
371
A
LEU
372
n
372
LEU
372
A
HIS
373
n
373
HIS
373
A
ASP
374
n
374
ASP
374
A
THR
375
n
375
THR
375
A
GLY
376
n
376
GLY
376
A
ALA
377
n
377
ALA
377
A
TYR
378
n
378
TYR
378
A
GLY
379
n
379
GLY
379
A
ALA
380
n
380
ALA
380
A
SER
381
n
381
SER
381
A
MET
382
n
382
MET
382
A
SER
383
n
383
SER
383
A
SER
384
n
384
SER
384
A
ASN
385
n
385
ASN
385
A
TYR
386
n
386
TYR
386
A
ASN
387
n
387
ASN
387
A
SER
388
n
388
SER
388
A
ARG
389
n
389
ARG
389
A
PRO
390
n
390
PRO
390
A
LEU
391
n
391
LEU
391
A
LEU
392
n
392
LEU
392
A
PRO
393
n
393
PRO
393
A
GLU
394
n
394
GLU
394
A
VAL
395
n
395
VAL
395
A
LEU
396
n
396
LEU
396
A
PHE
397
n
397
PHE
397
A
ASP
398
n
398
ASP
398
A
ASN
399
n
399
ASN
399
A
GLY
400
n
400
GLY
400
A
GLN
401
n
401
GLN
401
A
ALA
402
n
402
ALA
402
A
ARG
403
n
403
ARG
403
A
LEU
404
n
404
LEU
404
A
ILE
405
n
405
ILE
405
A
ARG
406
n
406
ARG
406
A
ARG
407
n
407
ARG
407
A
ARG
408
n
408
ARG
408
A
GLN
409
n
409
GLN
409
A
THR
410
n
410
THR
410
A
ILE
411
n
411
ILE
411
A
GLU
412
n
412
GLU
412
A
GLU
413
n
413
GLU
413
A
LEU
414
n
414
LEU
414
A
LEU
415
n
415
LEU
415
A
ALA
416
n
416
ALA
416
A
LEU
417
n
417
LEU
417
A
GLU
418
n
418
GLU
418
A
LEU
419
n
419
LEU
419
A
LEU
420
n
420
LEU
420
A
n
421
421
A
n
422
422
A
n
423
423
A
n
424
424
A
n
425
425
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
9030
-38
27830
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+5/6
crystal symmetry operation
49.4985000000
85.7339168984
147.4716666667
A
N
ILE
405
A
N
ILE
405
A
O
GLU
394
A
O
GLU
394
A
N
VAL
395
A
N
VAL
395
A
O
TRP
29
A
O
TRP
29
A
O
VAL
30
A
O
VAL
30
A
N
VAL
279
A
N
VAL
279
A
O
THR
282
A
O
THR
282
A
N
LEU
370
A
N
LEU
370
A
N
VAL
371
A
N
VAL
371
A
O
SER
318
A
O
SER
318
A
N
LEU
320
A
N
LEU
320
A
O
TYR
369
A
O
TYR
369
A
N
LEU
372
A
N
LEU
372
A
O
LEU
280
A
O
LEU
280
A
N
MET
290
A
N
MET
290
A
O
ARG
293
A
O
ARG
293
A
O
HIS
294
A
O
HIS
294
A
N
VAL
336
A
N
VAL
336
A
N
THR
335
A
N
THR
335
A
O
ARG
359
A
O
ARG
359
A
O
VAL
49
A
O
VAL
49
A
N
LYS
71
A
N
LYS
71
A
N
SER
74
A
N
SER
74
A
O
VAL
98
A
O
VAL
98
A
O
PHE
99
A
O
PHE
99
A
N
ASN
120
A
N
ASN
120
A
N
VAL
119
A
N
VAL
119
A
O
ARG
138
A
O
ARG
138
A
O
ARG
142
A
O
ARG
142
A
N
ILE
166
A
N
ILE
166
A
N
ILE
166
A
N
ILE
166
A
O
ARG
142
A
O
ARG
142
A
N
VAL
139
A
N
VAL
139
A
O
GLN
184
A
O
GLN
184
A
O
VAL
186
A
O
VAL
186
A
N
ALA
221
A
N
ALA
221
A
N
ILE
222
A
N
ILE
222
A
O
LYS
264
A
O
LYS
264
A
N
ILE
267
A
N
ILE
267
A
O
VAL
48
A
O
VAL
48
1
A
MET
1
A
MET
1
1
Y
1
A
HIS
421
A
HIS
421
1
Y
1
A
HIS
422
A
HIS
422
1
Y
1
A
HIS
423
A
HIS
423
1
Y
1
A
HIS
424
A
HIS
424
1
Y
1
A
HIS
425
A
HIS
425
1
Y
1
A
CA
DLY
542
PLANAR
B
1
A
GLY
158
-10.53
1
A
GLY
165
10.89
1
A
A
O
O
HOH
HOH
910
910
2.19
1_555
10_665
1
A
THR
8
-5.71
110.49
1
A
CYS
56
-176.71
94.40
1
A
ASN
161
-98.44
36.16
1
A
ILE
192
-120.68
-50.83
1
A
GLN
234
-32.27
120.81
1
A
CYS
342
-90.62
54.53
1
A
ASN
399
35.86
69.38
21.0
0.246
0.181
2.20
10.0
1315
26301
26301
97.8
Random 5%
1
0
0
MOLECULAR REPLACEMENT
PDB entry 1KNW
2.20
10.0
384
3663
35
0
3244
0.014
0.014
0.283
0.178
2.289
127
2603
21.0
2.17
20.0
1KO0
-3
0.073
0.073
1
6.1
97.8
data reduction
DENZO
data scaling
SCALEPACK
model building
CCP4
refinement
REFMAC
phasing
CCP4
Crystal Structure of a D,L-lysine complex of diaminopimelate decarboxylase
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
The biological assembly is a dimer generated from the monomer
in the asymmetric unit by the operation: -Y, -X, 5/6-Z
A
THR
13
A
THR
13
HELX_P
A
GLY
25
A
GLY
25
1
1
13
A
ALA
33
A
ALA
33
HELX_P
A
ALA
42
A
ALA
42
1
2
10
A
LYS
54
A
LYS
54
HELX_P
A
CYS
56
A
CYS
56
5
3
3
A
ASN
58
A
ASN
58
HELX_P
A
GLN
68
A
GLN
68
1
4
11
A
SER
76
A
SER
76
HELX_P
A
ALA
86
A
ALA
86
1
5
11
A
ASP
105
A
ASP
105
HELX_P
A
GLN
116
A
GLN
116
1
6
12
A
SER
123
A
SER
123
HELX_P
A
SER
134
A
SER
134
1
7
12
A
ASP
170
A
ASP
170
HELX_P
A
HIS
181
A
HIS
181
1
8
12
A
ASP
197
A
ASP
197
HELX_P
A
GLY
216
A
GLY
216
1
9
20
A
ASP
240
A
ASP
240
HELX_P
A
GLY
260
A
GLY
260
1
10
21
A
GLY
270
A
GLY
270
HELX_P
A
ALA
275
A
ALA
275
1
11
6
A
MET
306
A
MET
306
HELX_P
A
GLY
312
A
GLY
312
1
12
7
A
GLY
379
A
GLY
379
HELX_P
A
SER
383
A
SER
383
5
13
5
A
THR
410
A
THR
410
HELX_P
A
ALA
416
A
ALA
416
1
14
7
covale
1.623
one
A
A
LYS
54
A
NZ
LYS
54
1_555
A
PLP
540
B
C4A
PLP
1_555
covale
1.253
one
B
A
A
PLP
540
B
C4A
PLP
1_555
A
LYS
541
C
NZ
LYS
1_555
covale
1.238
both
C
B
A
PLP
540
B
C4A
PLP
1_555
A
DLY
542
D
N
DLY
1_555
LYASE
pyridoxal-5'-phosphate, diaminopimelate, lysine, PLP, TIM-barrel, LYASE
A
CYS
26
A
CYS
26
1
A
PRO
27
A
PRO
27
-0.04
DCDA_ECOLI
UNP
1
1
P00861
MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEI
ERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVD
TEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISAL
AADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNG
QARLIRRRQTIEELLALELL
1
420
1KO0
1
420
P00861
A
1
1
420
1
expression tag
HIS
421
1KO0
A
P00861
UNP
421
1
expression tag
HIS
422
1KO0
A
P00861
UNP
422
1
expression tag
HIS
423
1KO0
A
P00861
UNP
423
1
expression tag
HIS
424
1KO0
A
P00861
UNP
424
1
expression tag
HIS
425
1KO0
A
P00861
UNP
425
11
11
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
GLN
401
A
GLN
401
A
ARG
406
A
ARG
406
A
GLU
394
A
GLU
394
A
ASP
398
A
ASP
398
A
VAL
28
A
VAL
28
A
ASP
32
A
ASP
32
A
GLY
278
A
GLY
278
A
MET
290
A
MET
290
A
TYR
369
A
TYR
369
A
HIS
373
A
HIS
373
A
ILE
317
A
ILE
317
A
LEU
320
A
LEU
320
A
TYR
369
A
TYR
369
A
HIS
373
A
HIS
373
A
GLY
278
A
GLY
278
A
MET
290
A
MET
290
A
ARG
293
A
ARG
293
A
VAL
298
A
VAL
298
A
THR
332
A
THR
332
A
ALA
338
A
ALA
338
A
ARG
359
A
ARG
359
A
PRO
362
A
PRO
362
A
VAL
48
A
VAL
48
A
ALA
52
A
ALA
52
A
LYS
71
A
LYS
71
A
SER
74
A
SER
74
A
ILE
97
A
ILE
97
A
ALA
101
A
ALA
101
A
VAL
119
A
VAL
119
A
ALA
121
A
ALA
121
A
ARG
138
A
ARG
138
A
ASN
144
A
ASN
144
A
ILE
166
A
ILE
166
A
TRP
167
A
TRP
167
A
ARG
138
A
ARG
138
A
ASN
144
A
ASN
144
A
GLN
184
A
GLN
184
A
HIS
189
A
HIS
189
A
ALA
221
A
ALA
221
A
SER
223
A
SER
223
A
LYS
264
A
LYS
264
A
ILE
267
A
ILE
267
A
VAL
48
A
VAL
48
A
ALA
52
A
ALA
52
BINDING SITE FOR RESIDUE PLP A 540
A
PLP
540
Software
16
BINDING SITE FOR RESIDUE LYS A 541
A
LYS
541
Software
11
BINDING SITE FOR RESIDUE DLY A 542
A
DLY
542
Software
11
A
ALA
52
A
ALA
52
16
1_555
A
LYS
54
A
LYS
54
16
1_555
A
HIS
191
A
HIS
191
16
1_555
A
GLY
226
A
GLY
226
16
1_555
A
GLY
227
A
GLY
227
16
1_555
A
GLU
268
A
GLU
268
16
1_555
A
GLY
270
A
GLY
270
16
1_555
A
ARG
271
A
ARG
271
16
1_555
A
CYS
342
A
CYS
342
16
10_665
A
TYR
378
A
TYR
378
16
1_555
A
LYS
541
C
LYS
16
1_555
A
DLY
542
D
DLY
16
1_555
A
HOH
579
E
HOH
16
1_555
A
HOH
582
E
HOH
16
1_555
A
HOH
666
E
HOH
16
1_555
A
HOH
870
E
HOH
16
1_555
A
LYS
54
A
LYS
54
11
1_555
A
HIS
191
A
HIS
191
11
1_555
A
ARG
271
A
ARG
271
11
1_555
A
ARG
307
A
ARG
307
11
1_555
A
TYR
311
A
TYR
311
11
1_555
A
CYS
342
A
CYS
342
11
10_665
A
GLU
343
A
GLU
343
11
10_665
A
TYR
378
A
TYR
378
11
1_555
A
MET
382
A
MET
382
11
1_555
A
TYR
386
A
TYR
386
11
10_665
A
PLP
540
B
PLP
11
1_555
A
LYS
54
A
LYS
54
11
1_555
A
THR
157
A
THR
157
11
1_555
A
HIS
191
A
HIS
191
11
1_555
A
TYR
311
A
TYR
311
11
1_555
A
CYS
342
A
CYS
342
11
10_665
A
GLU
343
A
GLU
343
11
10_665
A
SER
344
A
SER
344
11
10_665
A
TYR
378
A
TYR
378
11
1_555
A
TYR
386
A
TYR
386
11
10_665
A
PLP
540
B
PLP
11
1_555
A
HOH
887
E
HOH
11
1_555
178
P 61 2 2