0.014885 0.000000 0.000000 0.000000 0.012816 0.000000 0.000000 0.000000 0.012480 0.00000 0.00000 0.00000 Garcia-Saez, I. Docquier, J.-D. Rossolini, G.M. Dideberg, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 67.180 78.030 80.130 C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C3 H7 N O5 S 169.156 n CYSTEINESULFONIC ACID L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N C N 2 N O N 3 N O N 4 N C N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 R C N 83 N C N 84 N O N 85 N C N 86 N S N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N N N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N N N 116 S C N 117 N C N 118 N O N 119 N C N 120 N C N 121 N C N 122 N O N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N N N 135 N C N 136 N C N 137 N O N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 N C Y 149 N C Y 150 N N Y 151 N C Y 152 N C Y 153 N N N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N H N 167 N H N 168 N N N 169 S C N 170 N C N 171 N O N 172 S C N 173 N C N 174 N C N 175 N C N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N N N 191 S C N 192 N C N 193 N O N 194 N C N 195 N C N 196 N C N 197 N C N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N C N 220 N N N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 R C N 239 N C N 240 N S N 241 N C N 242 N O N 243 N O N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C Y 259 N C Y 260 N C Y 261 N C Y 262 N C Y 263 N C Y 264 N C N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N C N 283 N C N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C N 299 N O N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 R C N 313 N O N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N N Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C N 363 N O N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N ZN N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N doub Y 148 N doub N 149 N sing Y 150 N sing N 151 N sing Y 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N doub N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing Y 251 N doub Y 252 N sing Y 253 N sing N 254 N sing Y 255 N doub N 256 N sing Y 257 N doub N 258 N sing Y 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing Y 320 N doub Y 321 N sing Y 322 N sing N 323 N sing Y 324 N doub Y 325 N sing Y 326 N sing N 327 N sing Y 328 N sing Y 329 N doub N 330 N sing Y 331 N doub N 332 N sing Y 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing Y 348 N doub Y 349 N sing Y 350 N sing N 351 N sing Y 352 N doub N 353 N sing Y 354 N doub N 355 N sing Y 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 375 604 611 10.1016/j.jmb.2007.11.012 18061205 The three-dimensional structure of VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa in its reduced and oxidised form 2008 10.2210/pdb1ko2/pdb pdb_00001ko2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-01-01 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.97929 1.0 BM14 ESRF 0.97929 SYNCHROTRON ESRF BEAMLINE BM14 24570.244 VIM-2 metallo-beta-lactamase 3.5.2.6 residues 30-295 1 man polymer 65.409 ZINC ION 2 syn non-polymer 59.044 ACETATE ION 2 syn non-polymer 18.015 water 115 nat water no yes EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAV STHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSA SVLYGG(OCS)AIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAV STHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSA SVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pseudomonas Escherichia Escherichia coli sample blaVIM-2 287 Pseudomonas aeruginosa 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid PET9-VIM-2 1 2.02 38.49 VAPOR DIFFUSION, HANGING DROP 6.5 30% PEG8K, 0.2M Na acetate, 0.1M NaCac./Cac.acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K 293.15 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_conn_type struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description Data collection 1 0 2003-09-02 1 1 2008-01-07 1 2 2011-07-13 1 3 2023-10-25 1 4 2023-11-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_conn_type.id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 1KO3 contains the same protein(with Cys221 reduced). RCSB Y PDBJ 2001-12-20 REL REL ZN ZINC ION ACT ACETATE ION HOH water THIS COORDINATES IS USED NON-SEQUENTIAL RESIDUE NUMBERING. MANY NUMBERS WERE SIMPLY SKIPPED IN THE NUMBERING AND HAVE NOTHING TO DO WITH LACK OF ELECTRON DENSITY. RESIDUES IN THE STRUCTURE ARE NUMBERED FOLLOWING THE STANDARD NUMBERING FOR CLASS B BETA-LACTAMASES (BBL NUMBERING) (GALLENI, M. ET AL. (2001). "STANDARD NUMBERING SCHEME FOR CLASS B BETA-LACTAMASES". ANTIMICROB. AGENTS CHEMOTHER. MARCH, P. 660-663). 1BVT PDB-ENTRY 1BVT PDB experimental model ZN 300 2 ZN ZN 300 A ZN 301 2 ZN ZN 301 A ACT 400 3 ACT ACT 400 A ACT 401 3 ACT ACT 401 A HOH 1 4 HOH HOH 402 A HOH 2 4 HOH HOH 403 A HOH 3 4 HOH HOH 404 A HOH 4 4 HOH HOH 405 A HOH 5 4 HOH HOH 406 A HOH 6 4 HOH HOH 407 A HOH 7 4 HOH HOH 408 A HOH 8 4 HOH HOH 409 A HOH 9 4 HOH HOH 410 A HOH 10 4 HOH HOH 411 A HOH 11 4 HOH HOH 412 A HOH 12 4 HOH HOH 413 A HOH 13 4 HOH HOH 414 A HOH 14 4 HOH HOH 415 A HOH 15 4 HOH HOH 416 A HOH 16 4 HOH HOH 417 A HOH 17 4 HOH HOH 418 A HOH 18 4 HOH HOH 419 A HOH 19 4 HOH HOH 420 A HOH 20 4 HOH HOH 421 A HOH 21 4 HOH HOH 422 A HOH 22 4 HOH HOH 423 A HOH 23 4 HOH HOH 424 A HOH 24 4 HOH HOH 425 A HOH 25 4 HOH HOH 426 A HOH 26 4 HOH HOH 427 A HOH 27 4 HOH HOH 428 A HOH 28 4 HOH HOH 429 A HOH 29 4 HOH HOH 430 A HOH 30 4 HOH HOH 431 A HOH 31 4 HOH HOH 432 A HOH 32 4 HOH HOH 433 A HOH 33 4 HOH HOH 434 A HOH 34 4 HOH HOH 435 A HOH 35 4 HOH HOH 436 A HOH 36 4 HOH HOH 437 A HOH 37 4 HOH HOH 438 A HOH 38 4 HOH HOH 439 A HOH 39 4 HOH HOH 440 A HOH 40 4 HOH HOH 441 A HOH 41 4 HOH HOH 442 A HOH 42 4 HOH HOH 443 A HOH 43 4 HOH HOH 444 A HOH 44 4 HOH HOH 445 A HOH 45 4 HOH HOH 446 A HOH 46 4 HOH HOH 447 A HOH 47 4 HOH HOH 448 A HOH 48 4 HOH HOH 449 A HOH 49 4 HOH HOH 450 A HOH 50 4 HOH HOH 451 A HOH 51 4 HOH HOH 452 A HOH 52 4 HOH HOH 453 A HOH 53 4 HOH HOH 454 A HOH 54 4 HOH HOH 455 A HOH 55 4 HOH HOH 456 A HOH 56 4 HOH HOH 457 A HOH 57 4 HOH HOH 458 A HOH 58 4 HOH HOH 459 A HOH 59 4 HOH HOH 460 A HOH 60 4 HOH HOH 461 A HOH 61 4 HOH HOH 462 A HOH 62 4 HOH HOH 463 A HOH 63 4 HOH HOH 464 A HOH 64 4 HOH HOH 465 A HOH 65 4 HOH HOH 466 A HOH 66 4 HOH HOH 467 A HOH 67 4 HOH HOH 468 A HOH 68 4 HOH HOH 469 A HOH 69 4 HOH HOH 470 A HOH 70 4 HOH HOH 471 A HOH 71 4 HOH HOH 472 A HOH 72 4 HOH HOH 473 A HOH 73 4 HOH HOH 474 A HOH 74 4 HOH HOH 475 A HOH 75 4 HOH HOH 476 A HOH 76 4 HOH HOH 477 A HOH 77 4 HOH HOH 478 A HOH 78 4 HOH HOH 479 A HOH 79 4 HOH HOH 480 A HOH 80 4 HOH HOH 481 A HOH 81 4 HOH HOH 482 A HOH 82 4 HOH HOH 483 A HOH 83 4 HOH HOH 484 A HOH 84 4 HOH HOH 485 A HOH 85 4 HOH HOH 486 A HOH 86 4 HOH HOH 487 A HOH 87 4 HOH HOH 488 A HOH 88 4 HOH HOH 489 A HOH 89 4 HOH HOH 490 A HOH 90 4 HOH HOH 491 A HOH 91 4 HOH HOH 492 A HOH 92 4 HOH HOH 493 A HOH 93 4 HOH HOH 494 A HOH 94 4 HOH HOH 495 A HOH 95 4 HOH HOH 496 A HOH 96 4 HOH HOH 497 A HOH 97 4 HOH HOH 498 A HOH 98 4 HOH HOH 499 A HOH 99 4 HOH HOH 500 A HOH 100 4 HOH HOH 501 A HOH 101 4 HOH HOH 502 A HOH 102 4 HOH HOH 503 A HOH 103 4 HOH HOH 504 A HOH 104 4 HOH HOH 505 A HOH 105 4 HOH HOH 506 A HOH 106 4 HOH HOH 507 A HOH 107 4 HOH HOH 508 A HOH 108 4 HOH HOH 509 A HOH 109 4 HOH HOH 510 A HOH 110 4 HOH HOH 511 A HOH 111 4 HOH HOH 512 A HOH 112 4 HOH HOH 513 A HOH 113 4 HOH HOH 514 A HOH 114 4 HOH HOH 515 A HOH 115 4 HOH HOH 516 A GLU 30 n 1 GLU 30 A TYR 31 n 2 TYR 31 A PRO 32 n 3 PRO 32 A THR 33 n 4 THR 33 A VAL 34 n 5 VAL 34 A SER 35 n 6 SER 35 A GLU 36 n 7 GLU 36 A ILE 37 n 8 ILE 37 A PRO 38 n 9 PRO 38 A VAL 39 n 10 VAL 39 A GLY 40 n 11 GLY 40 A GLU 41 n 12 GLU 41 A VAL 42 n 13 VAL 42 A ARG 43 n 14 ARG 43 A LEU 44 n 15 LEU 44 A TYR 45 n 16 TYR 45 A GLN 47 n 17 GLN 47 A ILE 48 n 18 ILE 48 A ALA 49 n 19 ALA 49 A ASP 50 n 20 ASP 50 A GLY 51 n 21 GLY 51 A VAL 52 n 22 VAL 52 A TRP 53 n 23 TRP 53 A SER 54 n 24 SER 54 A HIS 55 n 25 HIS 55 A ILE 56 n 26 ILE 56 A ALA 57 n 27 ALA 57 A THR 58 n 28 THR 58 A GLN 59 n 29 GLN 59 A SER 60 n 30 SER 60 A PHE 61 n 31 PHE 61 A ASP 62 n 32 ASP 62 A GLY 63 n 33 GLY 63 A ALA 64 n 34 ALA 64 A VAL 66 n 35 VAL 66 A TYR 67 n 36 TYR 67 A PRO 68 n 37 PRO 68 A SER 69 n 38 SER 69 A ASN 70 n 39 ASN 70 A GLY 71 n 40 GLY 71 A LEU 72 n 41 LEU 72 A ILE 73 n 42 ILE 73 A VAL 74 n 43 VAL 74 A ARG 75 n 44 ARG 75 A ASP 76 n 45 ASP 76 A GLY 77 n 46 GLY 77 A ASP 78 n 47 ASP 78 A GLU 79 n 48 GLU 79 A LEU 80 n 49 LEU 80 A LEU 81 n 50 LEU 81 A LEU 82 n 51 LEU 82 A ILE 83 n 52 ILE 83 A ASP 84 n 53 ASP 84 A THR 85 n 54 THR 85 A ALA 86 n 55 ALA 86 A TRP 87 n 56 TRP 87 A GLY 88 n 57 GLY 88 A ALA 89 n 58 ALA 89 A LYS 90 n 59 LYS 90 A ASN 91 n 60 ASN 91 A THR 92 n 61 THR 92 A ALA 93 n 62 ALA 93 A ALA 94 n 63 ALA 94 A LEU 95 n 64 LEU 95 A LEU 96 n 65 LEU 96 A ALA 97 n 66 ALA 97 A GLU 98 n 67 GLU 98 A ILE 99 n 68 ILE 99 A GLU 100 n 69 GLU 100 A LYS 102 n 70 LYS 102 A GLN 103 n 71 GLN 103 A ILE 104 n 72 ILE 104 A GLY 105 n 73 GLY 105 A LEU 106 n 74 LEU 106 A PRO 107 n 75 PRO 107 A VAL 109 n 76 VAL 109 A THR 110 n 77 THR 110 A ARG 111 n 78 ARG 111 A ALA 112 n 79 ALA 112 A VAL 113 n 80 VAL 113 A SER 114 n 81 SER 114 A THR 115 n 82 THR 115 A HIS 116 n 83 HIS 116 A PHE 117 n 84 PHE 117 A HIS 118 n 85 HIS 118 A ASP 119 n 86 ASP 119 A ASP 120 n 87 ASP 120 A ARG 121 n 88 ARG 121 A VAL 122 n 89 VAL 122 A GLY 123 n 90 GLY 123 A GLY 124 n 91 GLY 124 A VAL 125 n 92 VAL 125 A ASP 126 n 93 ASP 126 A VAL 127 n 94 VAL 127 A LEU 128 n 95 LEU 128 A ARG 129 n 96 ARG 129 A ALA 130 n 97 ALA 130 A ALA 131 n 98 ALA 131 A GLY 133 n 99 GLY 133 A VAL 134 n 100 VAL 134 A ALA 135 n 101 ALA 135 A THR 136 n 102 THR 136 A TYR 137 n 103 TYR 137 A ALA 138 n 104 ALA 138 A SER 139 n 105 SER 139 A PRO 140 n 106 PRO 140 A SER 141 n 107 SER 141 A THR 142 n 108 THR 142 A ARG 143 n 109 ARG 143 A ARG 144 n 110 ARG 144 A LEU 145 n 111 LEU 145 A ALA 146 n 112 ALA 146 A GLU 147 n 113 GLU 147 A VAL 148 n 114 VAL 148 A GLU 149 n 115 GLU 149 A GLY 150 n 116 GLY 150 A ASN 165 n 117 ASN 165 A GLU 166 n 118 GLU 166 A ILE 167 n 119 ILE 167 A PRO 168 n 120 PRO 168 A THR 169 n 121 THR 169 A HIS 170 n 122 HIS 170 A SER 171 n 123 SER 171 A LEU 172 n 124 LEU 172 A GLU 173 n 125 GLU 173 A GLY 174 n 126 GLY 174 A LEU 175 n 127 LEU 175 A SER 176 n 128 SER 176 A SER 177 n 129 SER 177 A SER 178 n 130 SER 178 A GLY 179 n 131 GLY 179 A ASP 180 n 132 ASP 180 A ALA 181 n 133 ALA 181 A VAL 182 n 134 VAL 182 A ARG 183 n 135 ARG 183 A PHE 184 n 136 PHE 184 A GLY 185 n 137 GLY 185 A PRO 186 n 138 PRO 186 A VAL 187 n 139 VAL 187 A GLU 188 n 140 GLU 188 A LEU 189 n 141 LEU 189 A PHE 190 n 142 PHE 190 A TYR 191 n 143 TYR 191 A PRO 192 n 144 PRO 192 A GLY 193 n 145 GLY 193 A ALA 194 n 146 ALA 194 A ALA 195 n 147 ALA 195 A HIS 196 n 148 HIS 196 A SER 197 n 149 SER 197 A THR 198 n 150 THR 198 A ASP 199 n 151 ASP 199 A ASN 200 n 152 ASN 200 A LEU 201 n 153 LEU 201 A VAL 202 n 154 VAL 202 A VAL 203 n 155 VAL 203 A TYR 204 n 156 TYR 204 A VAL 205 n 157 VAL 205 A PRO 209 n 158 PRO 209 A SER 210 n 159 SER 210 A ALA 211 n 160 ALA 211 A SER 215 n 161 SER 215 A VAL 216 n 162 VAL 216 A LEU 217 n 163 LEU 217 A TYR 218 n 164 TYR 218 A GLY 219 n 165 GLY 219 A GLY 220 n 166 GLY 220 A OCS 221 n 167 OCS 221 A ALA 222 n 168 ALA 222 A ILE 223 n 169 ILE 223 A TYR 224 n 170 TYR 224 A GLU 225 n 171 GLU 225 A LEU 226 n 172 LEU 226 A SER 227 n 173 SER 227 A ARG 228 n 174 ARG 228 A THR 229 n 175 THR 229 A SER 230 n 176 SER 230 A ALA 231 n 177 ALA 231 A GLY 232 n 178 GLY 232 A ASN 233 n 179 ASN 233 A VAL 234 n 180 VAL 234 A ALA 235 n 181 ALA 235 A ASP 236 n 182 ASP 236 A ALA 237 n 183 ALA 237 A ASP 238 n 184 ASP 238 A LEU 239 n 185 LEU 239 A ALA 240 n 186 ALA 240 A GLU 241 n 187 GLU 241 A TRP 242 n 188 TRP 242 A PRO 243 n 189 PRO 243 A THR 244 n 190 THR 244 A SER 245 n 191 SER 245 A ILE 246 n 192 ILE 246 A GLU 247 n 193 GLU 247 A ARG 248 n 194 ARG 248 A ILE 249 n 195 ILE 249 A GLN 250 n 196 GLN 250 A GLN 251 n 197 GLN 251 A HIS 252 n 198 HIS 252 A TYR 253 n 199 TYR 253 A PRO 254 n 200 PRO 254 A GLU 255 n 201 GLU 255 A ALA 256 n 202 ALA 256 A GLN 257 n 203 GLN 257 A PHE 258 n 204 PHE 258 A VAL 259 n 205 VAL 259 A ILE 260 n 206 ILE 260 A PRO 261 n 207 PRO 261 A GLY 262 n 208 GLY 262 A HIS 263 n 209 HIS 263 A GLY 264 n 210 GLY 264 A LEU 265 n 211 LEU 265 A PRO 277 n 212 PRO 277 A GLY 278 n 213 GLY 278 A GLY 279 n 214 GLY 279 A LEU 280 n 215 LEU 280 A ASP 281 n 216 ASP 281 A LEU 282 n 217 LEU 282 A LEU 283 n 218 LEU 283 A LYS 284 n 219 LYS 284 A HIS 285 n 220 HIS 285 A THR 286 n 221 THR 286 A THR 287 n 222 THR 287 A ASN 288 n 223 ASN 288 A VAL 289 n 224 VAL 289 A VAL 290 n 225 VAL 290 A LYS 291 n 226 LYS 291 A ALA 292 n 227 ALA 292 A HIS 293 n 228 HIS 293 A THR 294 n 229 THR 294 A ASN 295 n 230 ASN 295 A author_defined_assembly 1 monomeric A HIS 116 A NE2 HIS 83 1_555 A ZN 300 B ZN ZN 1_555 A HIS 118 A ND1 HIS 85 1_555 99.0 A HIS 116 A NE2 HIS 83 1_555 A ZN 300 B ZN ZN 1_555 A HIS 196 A NE2 HIS 148 1_555 100.6 A HIS 118 A ND1 HIS 85 1_555 A ZN 300 B ZN ZN 1_555 A HIS 196 A NE2 HIS 148 1_555 115.2 A HIS 116 A NE2 HIS 83 1_555 A ZN 300 B ZN ZN 1_555 A HOH 461 F O HOH 1_555 172.5 A HIS 118 A ND1 HIS 85 1_555 A ZN 300 B ZN ZN 1_555 A HOH 461 F O HOH 1_555 81.0 A HIS 196 A NE2 HIS 148 1_555 A ZN 300 B ZN ZN 1_555 A HOH 461 F O HOH 1_555 86.1 A HIS 116 A NE2 HIS 83 1_555 A ZN 300 B ZN ZN 1_555 A HOH 467 F O HOH 1_555 88.6 A HIS 118 A ND1 HIS 85 1_555 A ZN 300 B ZN ZN 1_555 A HOH 467 F O HOH 1_555 131.1 A HIS 196 A NE2 HIS 148 1_555 A ZN 300 B ZN ZN 1_555 A HOH 467 F O HOH 1_555 110.5 A HOH 461 F O HOH 1_555 A ZN 300 B ZN ZN 1_555 A HOH 467 F O HOH 1_555 85.9 A HIS 170 A NE2 HIS 122 1_555 A ZN 301 C ZN ZN 1_555 A HIS 285 A ND1 HIS 220 6_554 110.4 A HIS 170 A NE2 HIS 122 1_555 A ZN 301 C ZN ZN 1_555 A ACT 400 D OXT ACT 1_555 116.8 A HIS 285 A ND1 HIS 220 6_554 A ZN 301 C ZN ZN 1_555 A ACT 400 D OXT ACT 1_555 102.0 A HIS 170 A NE2 HIS 122 1_555 A ZN 301 C ZN ZN 1_555 A ACT 401 E OXT ACT 1_555 124.2 A HIS 285 A ND1 HIS 220 6_554 A ZN 301 C ZN ZN 1_555 A ACT 401 E OXT ACT 1_555 94.4 A ACT 400 D OXT ACT 1_555 A ZN 301 C ZN ZN 1_555 A ACT 401 E OXT ACT 1_555 104.7 A OCS 221 CYSTEINESULFONIC ACID A OCS 167 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 43 A N ARG 14 A O ILE 56 A O ILE 26 A N GLN 59 A N GLN 29 A O TYR 67 A O TYR 36 A N LEU 72 A N LEU 41 A O ILE 83 A O ILE 52 A N LEU 82 A N LEU 51 A O ARG 111 A O ARG 78 A N ALA 112 A N ALA 79 A O TYR 137 A O TYR 103 A N ALA 138 A N ALA 104 A O HIS 170 A O HIS 122 A N VAL 182 A N VAL 134 A O LEU 189 A O LEU 141 A N GLU 188 A N GLU 140 A O TYR 204 A O TYR 156 A N VAL 203 A N VAL 155 A O TYR 218 A O TYR 164 A N LEU 217 A N LEU 163 A O ILE 260 A O ILE 206 1 A CB SER 35 A CB SER 6 0 Y 1 A OG SER 35 A OG SER 6 0 Y 1 A CG PHE 61 A CG PHE 31 0 Y 1 A CD1 PHE 61 A CD1 PHE 31 0 Y 1 A CD2 PHE 61 A CD2 PHE 31 0 Y 1 A CE1 PHE 61 A CE1 PHE 31 0 Y 1 A CE2 PHE 61 A CE2 PHE 31 0 Y 1 A CZ PHE 61 A CZ PHE 31 0 Y 1 A CD LYS 90 A CD LYS 59 0 Y 1 A CE LYS 90 A CE LYS 59 0 Y 1 A NZ LYS 90 A NZ LYS 59 0 Y 1 A CB LYS 102 A CB LYS 70 0 Y 1 A CG LYS 102 A CG LYS 70 0 Y 1 A CD LYS 102 A CD LYS 70 0 Y 1 A CE LYS 102 A CE LYS 70 0 Y 1 A NZ LYS 102 A NZ LYS 70 0 Y 1 A CD GLU 173 A CD GLU 125 0 Y 1 A OE1 GLU 173 A OE1 GLU 125 0 Y 1 A OE2 GLU 173 A OE2 GLU 125 0 Y 1 A CG GLN 251 A CG GLN 197 0 Y 1 A CD1 PHE 258 A CD1 PHE 204 0 Y 1 A CE1 PHE 258 A CE1 PHE 204 0 Y 1 A CE2 PHE 258 A CE2 PHE 204 0 Y 1 A CZ PHE 258 A CZ PHE 204 0 Y 1 A CG LYS 291 A CG LYS 226 0 Y 1 A CD LYS 291 A CD LYS 226 0 Y 1 A CE LYS 291 A CE LYS 226 0 Y 1 A NZ LYS 291 A NZ LYS 226 0 Y 1 A ASP 84 70.84 152.68 1 A TRP 87 67.89 92.45 1 A ALA 195 -154.28 -103.55 protein_rep.param protein.top ion.param acet.top water.param acet.param 22.2 2.21 0.00 0.00 2.64 0.00 -4.85 0.2506 0.008 0.2088 2.20 21.45 994 19877 10190 9.8 94.0 random 2475054.40 0.000000 1 restrained THROUGHOUT 0 MOLECULAR REPLACEMENT PDB-ENTRY 1BVT FLAT MODEL 39.0734 0.367294 0.31 0.25 5.00 0.36 0.23 2.20 21.45 115 1861 10 0 1736 0.006 1.3 25.0 1.50 0.58 1.50 1.04 2.00 0.60 2.00 0.96 2.50 0.349 0.029 0.251 2.34 148 1338 6 10.0 83.6 16.4 1.78 30 1KO2 34075 20045 3.0 1 13 69 1.78 1.85 49.2 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.1 VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa with an oxidized Cys (cysteinesulfonic) 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N A GLY 88 A GLY 57 HELX_P A ILE 104 A ILE 72 1 1 16 A HIS 118 A HIS 85 HELX_P A GLY 123 A GLY 90 1 2 6 A GLY 124 A GLY 91 HELX_P A ALA 131 A ALA 98 1 3 8 A SER 139 A SER 105 HELX_P A GLY 150 A GLY 116 1 4 12 A OCS 221 A OCS 167 HELX_P A ILE 223 A ILE 169 5 5 3 A GLU 241 A GLU 187 HELX_P A TYR 253 A TYR 199 1 6 13 A LEU 280 A LEU 215 HELX_P A ASN 295 A ASN 230 1 7 16 covale 1.327 both A GLY 220 A C GLY 166 1_555 A OCS 221 A N OCS 167 1_555 covale 1.330 both A OCS 221 A C OCS 167 1_555 A ALA 222 A N ALA 168 1_555 metalc 2.193 A HIS 116 A NE2 HIS 83 1_555 A ZN 300 B ZN ZN 1_555 metalc 2.136 A HIS 118 A ND1 HIS 85 1_555 A ZN 300 B ZN ZN 1_555 metalc 2.142 A HIS 170 A NE2 HIS 122 1_555 A ZN 301 C ZN ZN 1_555 metalc 2.155 A HIS 196 A NE2 HIS 148 1_555 A ZN 300 B ZN ZN 1_555 metalc 2.433 A HIS 285 A ND1 HIS 220 6_554 A ZN 301 C ZN ZN 1_555 metalc 2.591 A ZN 300 B ZN ZN 1_555 A HOH 461 F O HOH 1_555 metalc 2.208 A ZN 300 B ZN ZN 1_555 A HOH 467 F O HOH 1_555 metalc 2.143 A ZN 301 C ZN ZN 1_555 A ACT 400 D OXT ACT 1_555 metalc 2.263 A ZN 301 C ZN ZN 1_555 A ACT 401 E OXT ACT 1_555 HYDROLASE alpha-beta/beta-alpha fold, HYDROLASE Q9K2N0_PSEAE UNP 1 32 Q9K2N0 EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAV STHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSA SVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN 32 261 1KO2 30 295 Q9K2N0 A 1 1 230 1 CYS modified residue OCS 221 1KO2 A Q9K2N0 UNP 198 167 7 5 anti-parallel anti-parallel anti-parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel A VAL 42 A VAL 13 A ALA 49 A ALA 19 A VAL 52 A VAL 22 A PHE 61 A PHE 31 A ALA 64 A ALA 34 A ASP 76 A ASP 45 A GLU 79 A GLU 48 A ILE 83 A ILE 52 A VAL 109 A VAL 76 A VAL 113 A VAL 80 A ALA 135 A ALA 101 A ALA 138 A ALA 104 A HIS 170 A HIS 122 A SER 171 A SER 123 A ALA 181 A ALA 133 A PHE 184 A PHE 136 A VAL 187 A VAL 139 A PHE 190 A PHE 142 A VAL 202 A VAL 154 A VAL 205 A VAL 157 A VAL 216 A VAL 162 A GLY 220 A GLY 166 A PHE 258 A PHE 204 A PRO 261 A PRO 207 BINDING SITE FOR RESIDUE ZN A 300 A ZN 300 Software 5 BINDING SITE FOR RESIDUE ZN A 301 A ZN 301 Software 4 BINDING SITE FOR RESIDUE ACT A 400 A ACT 400 Software 8 BINDING SITE FOR RESIDUE ACT A 401 A ACT 401 Software 6 A HIS 116 A HIS 83 5 1_555 A HIS 118 A HIS 85 5 1_555 A HIS 196 A HIS 148 5 1_555 A HOH 461 F HOH 5 1_555 A HOH 467 F HOH 5 1_555 A HIS 170 A HIS 122 4 1_555 A HIS 285 A HIS 220 4 6_554 A ACT 400 D ACT 4 1_555 A ACT 401 E ACT 4 1_555 A ARG 129 A ARG 96 8 1_555 A ALA 135 A ALA 101 8 1_555 A THR 169 A THR 121 8 1_555 A HIS 170 A HIS 122 8 1_555 A HIS 285 A HIS 220 8 6_554 A ZN 301 C ZN 8 1_555 A ACT 401 E ACT 8 1_555 A HOH 446 F HOH 8 1_555 A ALA 135 A ALA 101 6 1_555 A HIS 170 A HIS 122 6 1_555 A HIS 285 A HIS 220 6 6_554 A ASN 288 A ASN 223 6 6_554 A ZN 301 C ZN 6 1_555 A ACT 400 D ACT 6 1_555 23 I 2 2 2