0.014748 0.000000 0.000000 0.000000 0.012814 0.000000 0.000000 0.000000 0.012555 0.00000 0.00000 0.00000 Garcia-Saez, I. Docquier, J.-D. Rossolini, G.M. Dideberg, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 67.805 78.040 79.648 C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H O -1 17.007 HYDROXIDE ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N C N 2 N O N 3 N O N 4 N C N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N CL N 82 N N N 83 R C N 84 N C N 85 N O N 86 N C N 87 N S N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 S C N 98 N C N 99 N O N 100 N C N 101 N C N 102 N C N 103 N O N 104 N N N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 N C N 121 N C N 122 N C N 123 N O N 124 N O N 125 N O N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 N C N 137 N C N 138 N O N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 S C N 147 N C N 148 N O N 149 N C Y 150 N C Y 151 N N Y 152 N C Y 153 N C Y 154 N N N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N O N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 S C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N C N 220 N C N 221 N N N 222 N O N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N O N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C Y 245 N C Y 246 N C Y 247 N C Y 248 N C Y 249 N C Y 250 N C N 251 N O N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N C N 269 N C N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C N 285 N O N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 R C N 299 N O N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N N Y 320 N C Y 321 N C Y 322 N C Y 323 N C Y 324 N C N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N O N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C N 367 N C N 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N ZN N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N doub Y 148 N doub N 149 N sing Y 150 N sing N 151 N sing Y 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing Y 236 N doub Y 237 N sing Y 238 N sing N 239 N sing Y 240 N doub N 241 N sing Y 242 N doub N 243 N sing Y 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing Y 305 N doub Y 306 N sing Y 307 N sing N 308 N sing Y 309 N doub Y 310 N sing Y 311 N sing N 312 N sing Y 313 N sing Y 314 N doub N 315 N sing Y 316 N doub N 317 N sing Y 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub N 338 N sing Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 375 604 611 10.1016/j.jmb.2007.11.012 18061205 The three-dimensional structure of VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa in its reduced and oxidised form 2008 10.2210/pdb1ko3/pdb pdb_00001ko3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors IMAGE PLATE 2001-10-24 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR591 24522.246 VIM-2 metallo-beta-lactamase 3.5.2.6 residues 30-295 1 man polymer 65.409 ZINC ION 3 syn non-polymer 59.044 ACETATE ION 2 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 17.007 HYDROXIDE ION 1 syn non-polymer 18.015 water 136 nat water no no EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAV STHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSA SVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAV STHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSA SVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pseudomonas Escherichia Escherichia coli sample blaVIM-2 287 Pseudomonas aeruginosa 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid PET9-VIM-2 1 2.15 42.72 VAPOR DIFFUSION, HANGING DROP 6.5 30% PEG8K, 0.1M NaCac/Cac.acid, 0.2M Na acetate, 0.5mM TCEP, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K 293.15 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2003-09-02 1 1 2008-01-07 1 2 2011-07-13 1 3 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1KO2 contains the same protein(with an oxidized Cys221) RCSB Y PDBJ 2001-12-20 REL REL ZN ZINC ION ACT ACETATE ION CL CHLORIDE ION OH HYDROXIDE ION HOH water THIS COORDINATES IS USED NON-SEQUENTIAL RESIDUE NUMBERING. MANY NUMBERS WERE SIMPLY SKIPPED IN THE NUMBERING AND HAVE NOTHING TO DO WITH LACK OF ELECTRON DENSITY. RESIDUES IN THE STRUCTURE ARE NUMBERED FOLLOWING THE STANDARD NUMBERING FOR CLASS B BETA-LACTAMASES (BBL NUMBERING) (GALLENI, M. ET AL. (2001). "STANDARD NUMBERING SCHEME FOR CLASS B BETA-LACTAMASES". ANTIMICROB. AGENTS CHEMOTHER. MARCH, P. 660-663). 1KO2 VIM-2 oxidized, PDB ID code 1KO2 PDB experimental model ZN 1 2 ZN ZN 1 A ZN 2 2 ZN ZN 2 A ZN 3 2 ZN ZN 3 A ACT 400 3 ACT ACT 400 A ACT 401 3 ACT ACT 401 A CL 402 4 CL CL 402 A OH 1 5 OH OH 1001 A TIP 403 6 HOH HOH 1002 A TIP 2 6 HOH HOH 1003 A TIP 3 6 HOH HOH 1004 A TIP 4 6 HOH HOH 1005 A TIP 5 6 HOH HOH 1006 A TIP 6 6 HOH HOH 1007 A TIP 7 6 HOH HOH 1008 A TIP 8 6 HOH HOH 1009 A TIP 9 6 HOH HOH 1010 A TIP 10 6 HOH HOH 1011 A TIP 11 6 HOH HOH 1012 A TIP 12 6 HOH HOH 1013 A TIP 13 6 HOH HOH 1014 A TIP 14 6 HOH HOH 1015 A TIP 15 6 HOH HOH 1016 A TIP 16 6 HOH HOH 1017 A TIP 17 6 HOH HOH 1018 A TIP 18 6 HOH HOH 1019 A TIP 19 6 HOH HOH 1020 A TIP 20 6 HOH HOH 1021 A TIP 21 6 HOH HOH 1022 A TIP 22 6 HOH HOH 1023 A TIP 23 6 HOH HOH 1024 A TIP 24 6 HOH HOH 1025 A TIP 25 6 HOH HOH 1026 A TIP 26 6 HOH HOH 1027 A TIP 27 6 HOH HOH 1028 A TIP 28 6 HOH HOH 1029 A TIP 29 6 HOH HOH 1030 A TIP 30 6 HOH HOH 1031 A TIP 31 6 HOH HOH 1032 A TIP 32 6 HOH HOH 1033 A TIP 33 6 HOH HOH 1034 A TIP 34 6 HOH HOH 1035 A TIP 35 6 HOH HOH 1036 A TIP 36 6 HOH HOH 1037 A TIP 37 6 HOH HOH 1038 A TIP 38 6 HOH HOH 1039 A TIP 39 6 HOH HOH 1040 A TIP 40 6 HOH HOH 1041 A TIP 41 6 HOH HOH 1042 A TIP 42 6 HOH HOH 1043 A TIP 43 6 HOH HOH 1044 A TIP 44 6 HOH HOH 1045 A TIP 45 6 HOH HOH 1046 A TIP 46 6 HOH HOH 1047 A TIP 47 6 HOH HOH 1048 A TIP 48 6 HOH HOH 1049 A TIP 49 6 HOH HOH 1050 A TIP 50 6 HOH HOH 1051 A TIP 51 6 HOH HOH 1052 A TIP 52 6 HOH HOH 1053 A TIP 53 6 HOH HOH 1054 A TIP 54 6 HOH HOH 1055 A TIP 55 6 HOH HOH 1056 A TIP 56 6 HOH HOH 1057 A TIP 57 6 HOH HOH 1058 A TIP 58 6 HOH HOH 1059 A TIP 59 6 HOH HOH 1060 A TIP 60 6 HOH HOH 1061 A TIP 61 6 HOH HOH 1062 A TIP 62 6 HOH HOH 1063 A TIP 63 6 HOH HOH 1064 A TIP 64 6 HOH HOH 1065 A TIP 65 6 HOH HOH 1066 A TIP 66 6 HOH HOH 1067 A TIP 67 6 HOH HOH 1068 A TIP 68 6 HOH HOH 1069 A TIP 69 6 HOH HOH 1070 A TIP 70 6 HOH HOH 1071 A TIP 71 6 HOH HOH 1072 A TIP 72 6 HOH HOH 1073 A TIP 73 6 HOH HOH 1074 A TIP 74 6 HOH HOH 1075 A TIP 75 6 HOH HOH 1076 A TIP 76 6 HOH HOH 1077 A TIP 77 6 HOH HOH 1078 A TIP 78 6 HOH HOH 1079 A TIP 79 6 HOH HOH 1080 A TIP 80 6 HOH HOH 1081 A TIP 81 6 HOH HOH 1082 A TIP 82 6 HOH HOH 1083 A TIP 83 6 HOH HOH 1084 A TIP 84 6 HOH HOH 1085 A TIP 85 6 HOH HOH 1086 A TIP 86 6 HOH HOH 1087 A TIP 87 6 HOH HOH 1088 A TIP 88 6 HOH HOH 1089 A TIP 89 6 HOH HOH 1090 A TIP 90 6 HOH HOH 1091 A TIP 91 6 HOH HOH 1092 A TIP 92 6 HOH HOH 1093 A TIP 93 6 HOH HOH 1094 A TIP 94 6 HOH HOH 1095 A TIP 95 6 HOH HOH 1096 A TIP 96 6 HOH HOH 1097 A TIP 97 6 HOH HOH 1098 A TIP 98 6 HOH HOH 1099 A TIP 99 6 HOH HOH 1100 A TIP 100 6 HOH HOH 1101 A TIP 101 6 HOH HOH 1102 A TIP 102 6 HOH HOH 1103 A TIP 103 6 HOH HOH 1104 A TIP 104 6 HOH HOH 1105 A TIP 105 6 HOH HOH 1106 A TIP 106 6 HOH HOH 1107 A TIP 107 6 HOH HOH 1108 A TIP 108 6 HOH HOH 1109 A TIP 109 6 HOH HOH 1110 A TIP 110 6 HOH HOH 1111 A TIP 111 6 HOH HOH 1112 A TIP 112 6 HOH HOH 1113 A TIP 113 6 HOH HOH 1114 A TIP 114 6 HOH HOH 1115 A TIP 115 6 HOH HOH 1116 A TIP 116 6 HOH HOH 1117 A TIP 117 6 HOH HOH 1118 A TIP 118 6 HOH HOH 1119 A TIP 119 6 HOH HOH 1120 A TIP 120 6 HOH HOH 1121 A TIP 121 6 HOH HOH 1122 A TIP 122 6 HOH HOH 1123 A TIP 123 6 HOH HOH 1124 A TIP 124 6 HOH HOH 1125 A TIP 125 6 HOH HOH 1126 A TIP 126 6 HOH HOH 1127 A TIP 127 6 HOH HOH 1128 A TIP 128 6 HOH HOH 1129 A TIP 129 6 HOH HOH 1130 A TIP 130 6 HOH HOH 1131 A TIP 131 6 HOH HOH 1132 A TIP 132 6 HOH HOH 1133 A TIP 133 6 HOH HOH 1134 A TIP 134 6 HOH HOH 1135 A TIP 135 6 HOH HOH 1136 A TIP 136 6 HOH HOH 1137 A GLU 30 n 1 GLU 30 A TYR 31 n 2 TYR 31 A PRO 32 n 3 PRO 32 A THR 33 n 4 THR 33 A VAL 34 n 5 VAL 34 A SER 35 n 6 SER 35 A GLU 36 n 7 GLU 36 A ILE 37 n 8 ILE 37 A PRO 38 n 9 PRO 38 A VAL 39 n 10 VAL 39 A GLY 40 n 11 GLY 40 A GLU 41 n 12 GLU 41 A VAL 42 n 13 VAL 42 A ARG 43 n 14 ARG 43 A LEU 44 n 15 LEU 44 A TYR 45 n 16 TYR 45 A GLN 47 n 17 GLN 47 A ILE 48 n 18 ILE 48 A ALA 49 n 19 ALA 49 A ASP 50 n 20 ASP 50 A GLY 51 n 21 GLY 51 A VAL 52 n 22 VAL 52 A TRP 53 n 23 TRP 53 A SER 54 n 24 SER 54 A HIS 55 n 25 HIS 55 A ILE 56 n 26 ILE 56 A ALA 57 n 27 ALA 57 A THR 58 n 28 THR 58 A GLN 59 n 29 GLN 59 A SER 60 n 30 SER 60 A PHE 61 n 31 PHE 61 A ASP 62 n 32 ASP 62 A GLY 63 n 33 GLY 63 A ALA 64 n 34 ALA 64 A VAL 66 n 35 VAL 66 A TYR 67 n 36 TYR 67 A PRO 68 n 37 PRO 68 A SER 69 n 38 SER 69 A ASN 70 n 39 ASN 70 A GLY 71 n 40 GLY 71 A LEU 72 n 41 LEU 72 A ILE 73 n 42 ILE 73 A VAL 74 n 43 VAL 74 A ARG 75 n 44 ARG 75 A ASP 76 n 45 ASP 76 A GLY 77 n 46 GLY 77 A ASP 78 n 47 ASP 78 A GLU 79 n 48 GLU 79 A LEU 80 n 49 LEU 80 A LEU 81 n 50 LEU 81 A LEU 82 n 51 LEU 82 A ILE 83 n 52 ILE 83 A ASP 84 n 53 ASP 84 A THR 85 n 54 THR 85 A ALA 86 n 55 ALA 86 A TRP 87 n 56 TRP 87 A GLY 88 n 57 GLY 88 A ALA 89 n 58 ALA 89 A LYS 90 n 59 LYS 90 A ASN 91 n 60 ASN 91 A THR 92 n 61 THR 92 A ALA 93 n 62 ALA 93 A ALA 94 n 63 ALA 94 A LEU 95 n 64 LEU 95 A LEU 96 n 65 LEU 96 A ALA 97 n 66 ALA 97 A GLU 98 n 67 GLU 98 A ILE 99 n 68 ILE 99 A GLU 100 n 69 GLU 100 A LYS 102 n 70 LYS 102 A GLN 103 n 71 GLN 103 A ILE 104 n 72 ILE 104 A GLY 105 n 73 GLY 105 A LEU 106 n 74 LEU 106 A PRO 107 n 75 PRO 107 A VAL 109 n 76 VAL 109 A THR 110 n 77 THR 110 A ARG 111 n 78 ARG 111 A ALA 112 n 79 ALA 112 A VAL 113 n 80 VAL 113 A SER 114 n 81 SER 114 A THR 115 n 82 THR 115 A HIS 116 n 83 HIS 116 A PHE 117 n 84 PHE 117 A HIS 118 n 85 HIS 118 A ASP 119 n 86 ASP 119 A ASP 120 n 87 ASP 120 A ARG 121 n 88 ARG 121 A VAL 122 n 89 VAL 122 A GLY 123 n 90 GLY 123 A GLY 124 n 91 GLY 124 A VAL 125 n 92 VAL 125 A ASP 126 n 93 ASP 126 A VAL 127 n 94 VAL 127 A LEU 128 n 95 LEU 128 A ARG 129 n 96 ARG 129 A ALA 130 n 97 ALA 130 A ALA 131 n 98 ALA 131 A GLY 133 n 99 GLY 133 A VAL 134 n 100 VAL 134 A ALA 135 n 101 ALA 135 A THR 136 n 102 THR 136 A TYR 137 n 103 TYR 137 A ALA 138 n 104 ALA 138 A SER 139 n 105 SER 139 A PRO 140 n 106 PRO 140 A SER 141 n 107 SER 141 A THR 142 n 108 THR 142 A ARG 143 n 109 ARG 143 A ARG 144 n 110 ARG 144 A LEU 145 n 111 LEU 145 A ALA 146 n 112 ALA 146 A GLU 147 n 113 GLU 147 A VAL 148 n 114 VAL 148 A GLU 149 n 115 GLU 149 A GLY 150 n 116 GLY 150 A ASN 165 n 117 ASN 165 A GLU 166 n 118 GLU 166 A ILE 167 n 119 ILE 167 A PRO 168 n 120 PRO 168 A THR 169 n 121 THR 169 A HIS 170 n 122 HIS 170 A SER 171 n 123 SER 171 A LEU 172 n 124 LEU 172 A GLU 173 n 125 GLU 173 A GLY 174 n 126 GLY 174 A LEU 175 n 127 LEU 175 A SER 176 n 128 SER 176 A SER 177 n 129 SER 177 A SER 178 n 130 SER 178 A GLY 179 n 131 GLY 179 A ASP 180 n 132 ASP 180 A ALA 181 n 133 ALA 181 A VAL 182 n 134 VAL 182 A ARG 183 n 135 ARG 183 A PHE 184 n 136 PHE 184 A GLY 185 n 137 GLY 185 A PRO 186 n 138 PRO 186 A VAL 187 n 139 VAL 187 A GLU 188 n 140 GLU 188 A LEU 189 n 141 LEU 189 A PHE 190 n 142 PHE 190 A TYR 191 n 143 TYR 191 A PRO 192 n 144 PRO 192 A GLY 193 n 145 GLY 193 A ALA 194 n 146 ALA 194 A ALA 195 n 147 ALA 195 A HIS 196 n 148 HIS 196 A SER 197 n 149 SER 197 A THR 198 n 150 THR 198 A ASP 199 n 151 ASP 199 A ASN 200 n 152 ASN 200 A LEU 201 n 153 LEU 201 A VAL 202 n 154 VAL 202 A VAL 203 n 155 VAL 203 A TYR 204 n 156 TYR 204 A VAL 205 n 157 VAL 205 A PRO 209 n 158 PRO 209 A SER 210 n 159 SER 210 A ALA 211 n 160 ALA 211 A SER 215 n 161 SER 215 A VAL 216 n 162 VAL 216 A LEU 217 n 163 LEU 217 A TYR 218 n 164 TYR 218 A GLY 219 n 165 GLY 219 A GLY 220 n 166 GLY 220 A CYS 221 n 167 CYS 221 A ALA 222 n 168 ALA 222 A ILE 223 n 169 ILE 223 A TYR 224 n 170 TYR 224 A GLU 225 n 171 GLU 225 A LEU 226 n 172 LEU 226 A SER 227 n 173 SER 227 A ARG 228 n 174 ARG 228 A THR 229 n 175 THR 229 A SER 230 n 176 SER 230 A ALA 231 n 177 ALA 231 A GLY 232 n 178 GLY 232 A ASN 233 n 179 ASN 233 A VAL 234 n 180 VAL 234 A ALA 235 n 181 ALA 235 A ASP 236 n 182 ASP 236 A ALA 237 n 183 ALA 237 A ASP 238 n 184 ASP 238 A LEU 239 n 185 LEU 239 A ALA 240 n 186 ALA 240 A GLU 241 n 187 GLU 241 A TRP 242 n 188 TRP 242 A PRO 243 n 189 PRO 243 A THR 244 n 190 THR 244 A SER 245 n 191 SER 245 A ILE 246 n 192 ILE 246 A GLU 247 n 193 GLU 247 A ARG 248 n 194 ARG 248 A ILE 249 n 195 ILE 249 A GLN 250 n 196 GLN 250 A GLN 251 n 197 GLN 251 A HIS 252 n 198 HIS 252 A TYR 253 n 199 TYR 253 A PRO 254 n 200 PRO 254 A GLU 255 n 201 GLU 255 A ALA 256 n 202 ALA 256 A GLN 257 n 203 GLN 257 A PHE 258 n 204 PHE 258 A VAL 259 n 205 VAL 259 A ILE 260 n 206 ILE 260 A PRO 261 n 207 PRO 261 A GLY 262 n 208 GLY 262 A HIS 263 n 209 HIS 263 A GLY 264 n 210 GLY 264 A LEU 265 n 211 LEU 265 A PRO 277 n 212 PRO 277 A GLY 278 n 213 GLY 278 A GLY 279 n 214 GLY 279 A LEU 280 n 215 LEU 280 A ASP 281 n 216 ASP 281 A LEU 282 n 217 LEU 282 A LEU 283 n 218 LEU 283 A LYS 284 n 219 LYS 284 A HIS 285 n 220 HIS 285 A THR 286 n 221 THR 286 A THR 287 n 222 THR 287 A ASN 288 n 223 ASN 288 A VAL 289 n 224 VAL 289 A VAL 290 n 225 VAL 290 A LYS 291 n 226 LYS 291 A ALA 292 n 227 ALA 292 A HIS 293 n 228 HIS 293 A THR 294 n 229 THR 294 A ASN 295 n 230 ASN 295 A author_defined_assembly 1 monomeric A HIS 116 A NE2 HIS 83 1_555 A ZN 1 B ZN ZN 1_555 A HIS 118 A ND1 HIS 85 1_555 102.7 A HIS 116 A NE2 HIS 83 1_555 A ZN 1 B ZN ZN 1_555 A HIS 196 A NE2 HIS 148 1_555 102.7 A HIS 118 A ND1 HIS 85 1_555 A ZN 1 B ZN ZN 1_555 A HIS 196 A NE2 HIS 148 1_555 115.7 A HIS 116 A NE2 HIS 83 1_555 A ZN 1 B ZN ZN 1_555 A OH 1001 H O OH 1_555 103.0 A HIS 118 A ND1 HIS 85 1_555 A ZN 1 B ZN ZN 1_555 A OH 1001 H O OH 1_555 119.1 A HIS 196 A NE2 HIS 148 1_555 A ZN 1 B ZN ZN 1_555 A OH 1001 H O OH 1_555 110.8 A ASP 120 A OD2 ASP 87 1_555 A ZN 2 C ZN ZN 1_555 A CYS 221 A SG CYS 167 1_555 102.5 A ASP 120 A OD2 ASP 87 1_555 A ZN 2 C ZN ZN 1_555 A HIS 263 A NE2 HIS 209 1_555 94.3 A CYS 221 A SG CYS 167 1_555 A ZN 2 C ZN ZN 1_555 A HIS 263 A NE2 HIS 209 1_555 103.3 A ASP 120 A OD2 ASP 87 1_555 A ZN 2 C ZN ZN 1_555 A OH 1001 H O OH 1_555 74.1 A CYS 221 A SG CYS 167 1_555 A ZN 2 C ZN ZN 1_555 A OH 1001 H O OH 1_555 98.2 A HIS 263 A NE2 HIS 209 1_555 A ZN 2 C ZN ZN 1_555 A OH 1001 H O OH 1_555 157.4 A HIS 170 A NE2 HIS 122 1_555 A ZN 3 D ZN ZN 1_555 A HIS 285 A ND1 HIS 220 6_554 105.3 A HIS 170 A NE2 HIS 122 1_555 A ZN 3 D ZN ZN 1_555 A ACT 400 E OXT ACT 1_555 111.0 A HIS 285 A ND1 HIS 220 6_554 A ZN 3 D ZN ZN 1_555 A ACT 400 E OXT ACT 1_555 105.3 A HIS 170 A NE2 HIS 122 1_555 A ZN 3 D ZN ZN 1_555 A ACT 401 F OXT ACT 1_555 126.8 A HIS 285 A ND1 HIS 220 6_554 A ZN 3 D ZN ZN 1_555 A ACT 401 F OXT ACT 1_555 104.2 A ACT 400 E OXT ACT 1_555 A ZN 3 D ZN ZN 1_555 A ACT 401 F OXT ACT 1_555 102.4 A HIS 170 A NE2 HIS 122 1_555 A ZN 3 D ZN ZN 1_555 A ACT 401 F O ACT 1_555 88.0 A HIS 285 A ND1 HIS 220 6_554 A ZN 3 D ZN ZN 1_555 A ACT 401 F O ACT 1_555 83.7 A ACT 400 E OXT ACT 1_555 A ZN 3 D ZN ZN 1_555 A ACT 401 F O ACT 1_555 155.2 A ACT 401 F OXT ACT 1_555 A ZN 3 D ZN ZN 1_555 A ACT 401 F O ACT 1_555 52.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 43 A N ARG 14 A O ILE 56 A O ILE 26 A N PHE 61 A N PHE 31 A O ALA 64 A O ALA 34 A N ASP 76 A N ASP 45 A O GLU 79 A O GLU 48 A N LEU 82 A N LEU 51 A O ARG 111 A O ARG 78 A N ALA 112 A N ALA 79 A O TYR 137 A O TYR 103 A N ALA 138 A N ALA 104 A O HIS 170 A O HIS 122 A N VAL 182 A N VAL 134 A O LEU 189 A O LEU 141 A N PHE 190 A N PHE 142 A O VAL 202 A O VAL 154 A N VAL 203 A N VAL 155 A O TYR 218 A O TYR 164 A N LEU 217 A N LEU 163 A O PHE 258 A O PHE 204 1 A CG ASP 78 A CG ASP 47 0 Y 1 A CZ ARG 228 A CZ ARG 174 0 Y 1 A NH1 ARG 228 A NH1 ARG 174 0 Y 1 A NH2 ARG 228 A NH2 ARG 174 0 Y 1 A A O O HOH HOH 1100 1100 2.05 1_555 4_556 1 A ASP 84 68.54 151.88 1 A TRP 87 67.16 69.54 1 A GLN 103 -148.29 -18.21 1 A ALA 195 -148.74 -102.63 0.2504 0.2091 1.91 25 1439 16633 14741 9.76 88.6 random 1 restrained THROUGHOUT 0.0 MOLECULAR REPLACEMENT VIM-2 oxidized, PDB ID code 1KO2 0.29 0.23 5.00 0.24 0.17 1.91 25 136 1882 13 0 1733 0.007 1.4 0.95 0.317 0.026 0.254 2.03 149 1214 0.2529 0.2203 2.36 51 520 0.2597 0.1895 5.81 65 532 1.91 51.63 1KO3 16087 15030 0.052 0.045 1 12.6 3.6 90.6 0.171 1.91 2.02 5.4 544 0.135 1.7 50 data reduction DENZO data scaling SCALA phasing AMoRE refinement CNS 1.1 data scaling CCP4 (SCALA) VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa with Cys221 reduced 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N 4 N N 5 N N 6 N N A GLY 88 A GLY 57 HELX_P A LYS 102 A LYS 70 1 1 14 A HIS 118 A HIS 85 HELX_P A GLY 123 A GLY 90 1 2 6 A GLY 124 A GLY 91 HELX_P A ALA 131 A ALA 98 1 3 8 A SER 139 A SER 105 HELX_P A GLY 150 A GLY 116 1 4 12 A CYS 221 A CYS 167 HELX_P A ILE 223 A ILE 169 5 5 3 A GLU 241 A GLU 187 HELX_P A TYR 253 A TYR 199 1 6 13 A LEU 280 A LEU 215 HELX_P A ASN 295 A ASN 230 1 7 16 metalc 2.153 A ZN 1 B ZN ZN 1_555 A HIS 116 A NE2 HIS 83 1_555 metalc 2.050 A ZN 1 B ZN ZN 1_555 A HIS 118 A ND1 HIS 85 1_555 metalc 2.147 A ZN 1 B ZN ZN 1_555 A HIS 196 A NE2 HIS 148 1_555 metalc 2.099 A ZN 1 B ZN ZN 1_555 A OH 1001 H O OH 1_555 metalc 2.328 A ZN 2 C ZN ZN 1_555 A ASP 120 A OD2 ASP 87 1_555 metalc 2.278 A ZN 2 C ZN ZN 1_555 A CYS 221 A SG CYS 167 1_555 metalc 2.265 A ZN 2 C ZN ZN 1_555 A HIS 263 A NE2 HIS 209 1_555 metalc 2.523 A ZN 2 C ZN ZN 1_555 A OH 1001 H O OH 1_555 metalc 2.131 A ZN 3 D ZN ZN 1_555 A HIS 170 A NE2 HIS 122 1_555 metalc 2.165 A ZN 3 D ZN ZN 1_555 A HIS 285 A ND1 HIS 220 6_554 metalc 1.987 A ZN 3 D ZN ZN 1_555 A ACT 400 E OXT ACT 1_555 metalc 2.193 A ZN 3 D ZN ZN 1_555 A ACT 401 F OXT ACT 1_555 metalc 2.676 A ZN 3 D ZN ZN 1_555 A ACT 401 F O ACT 1_555 HYDROLASE alpha-beta/beta-alpha fold, HYDROLASE Q9K2N0_PSEAE UNP 1 32 Q9K2N0 EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAV STHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSA SVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN 32 261 1KO3 30 295 Q9K2N0 A 1 1 230 7 5 anti-parallel anti-parallel anti-parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel A ARG 43 A ARG 14 A ALA 49 A ALA 19 A VAL 52 A VAL 22 A PHE 61 A PHE 31 A ALA 64 A ALA 34 A ASP 76 A ASP 45 A GLU 79 A GLU 48 A ILE 83 A ILE 52 A VAL 109 A VAL 76 A VAL 113 A VAL 80 A ALA 135 A ALA 101 A ALA 138 A ALA 104 A HIS 170 A HIS 122 A SER 171 A SER 123 A ALA 181 A ALA 133 A PHE 184 A PHE 136 A VAL 187 A VAL 139 A PHE 190 A PHE 142 A VAL 202 A VAL 154 A VAL 205 A VAL 157 A VAL 216 A VAL 162 A GLY 220 A GLY 166 A PHE 258 A PHE 204 A PRO 261 A PRO 207 BINDING SITE FOR RESIDUE ZN A 1 A ZN 1 Software 5 BINDING SITE FOR RESIDUE ZN A 2 A ZN 2 Software 5 BINDING SITE FOR RESIDUE ZN A 3 A ZN 3 Software 4 BINDING SITE FOR RESIDUE ACT A 400 A ACT 400 Software 8 BINDING SITE FOR RESIDUE ACT A 401 A ACT 401 Software 7 BINDING SITE FOR RESIDUE CL A 402 A CL 402 Software 3 BINDING SITE FOR RESIDUE OH A 1001 A OH 1001 Software 9 A HIS 116 A HIS 83 5 1_555 A HIS 118 A HIS 85 5 1_555 A HIS 196 A HIS 148 5 1_555 A OH 1001 H OH 5 1_555 A HOH 1108 I HOH 5 1_555 A ASP 120 A ASP 87 5 1_555 A CYS 221 A CYS 167 5 1_555 A HIS 263 A HIS 209 5 1_555 A CL 402 G CL 5 1_555 A OH 1001 H OH 5 1_555 A HIS 170 A HIS 122 4 1_555 A HIS 285 A HIS 220 4 6_554 A ACT 400 E ACT 4 1_555 A ACT 401 F ACT 4 1_555 A ZN 3 D ZN 8 1_555 A ALA 135 A ALA 101 8 1_555 A THR 136 A THR 102 8 1_555 A THR 169 A THR 121 8 1_555 A HIS 170 A HIS 122 8 1_555 A HIS 285 A HIS 220 8 6_554 A ACT 401 F ACT 8 1_555 A HOH 1010 I HOH 8 1_555 A ZN 3 D ZN 7 1_555 A ALA 135 A ALA 101 7 1_555 A HIS 170 A HIS 122 7 1_555 A HIS 285 A HIS 220 7 6_554 A ASN 288 A ASN 223 7 6_554 A ACT 400 E ACT 7 1_555 A HOH 1082 I HOH 7 1_555 A ZN 2 C ZN 3 1_555 A OH 1001 H OH 3 1_555 A HOH 1002 I HOH 3 1_555 A ZN 1 B ZN 9 1_555 A ZN 2 C ZN 9 1_555 A HIS 116 A HIS 83 9 1_555 A HIS 118 A HIS 85 9 1_555 A ASP 120 A ASP 87 9 1_555 A HIS 196 A HIS 148 9 1_555 A CYS 221 A CYS 167 9 1_555 A CL 402 G CL 9 1_555 A HOH 1108 I HOH 9 1_555 23 I 2 2 2