0.011123
0.000000
0.000000
0.000000
0.011123
0.000000
0.000000
0.000000
0.004921
0.00000
0.00000
0.00000
Hodel, A.E.
Hodel, M.R.
Griffis, E.R.
Hennig, K.A.
Ratner, G.A.
Songli, X.
Powers, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90
90
90
89.9
89.9
203.2
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Mol.Cell
MOCEFL
2168
1097-2765
10
347
358
10.1016/S1097-2765(02)00589-0
12191480
The three-dimensional structure of the autoproteolytic, nuclear pore-targeting domain of the human nucleoporin Nup98.
2002
10.2210/pdb1ko6/pdb
pdb_00001ko6
77
1
CCD
2000-04-15
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X26C
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X26C
21201.639
Nuclear Pore Complex Protein Nup98
C-terminal Autoproteolytic Domain (Sequence database residues 677-863)
2
man
polymer
7111.907
Nuclear Pore Complex Protein Nup98
C-terminal Autoproteolytic Domain (Sequence database residues 864-920)
2
man
polymer
Nucleoporin Nup98, 98kDa nucleoporin
Nucleoporin Nup98, 98kDa nucleoporin
no
no
MAALRNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYG
SIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLE
AVSRKQGAQFKEYRPETGSWVFKVSHF
MAALRNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYG
SIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLE
AVSRKQGAQFKEYRPETGSWVFKVSHF
A,C
polypeptide(L)
no
no
SKYGLQDSDEEEEEHPSKTSTKKLKTAPLPPASQTTPLQMALNGKPAPPPQVEKKGQLEHHHHH
SKYGLQDSDEEEEEHPSKTSTKKLKTAPLPPASQTTPLQMALNGKPAPPPQVEKKGQLEHHHHH
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
NUP98
562
Escherichia coli
human
Homo
Escherichia
sample
9606
Homo sapiens
NUP98
562
Escherichia coli
1
3.62
66.05
VAPOR DIFFUSION, HANGING DROP
8.75
MgCl, PEG8000, Tris, pH 8.75, VAPOR DIFFUSION, HANGING DROP, temperature 300K
300
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
1
0
2002-09-04
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
SEQUENCE
Chains A(C) and B(D) are autocatalytically cleaved between residues 863 and 864.
RCSB
Y
RCSB
2001-12-20
REL
n
1
677
A
n
2
678
A
n
3
679
A
n
4
680
A
n
5
681
A
n
6
682
A
n
7
683
A
n
8
684
A
n
9
685
A
n
10
686
A
n
11
687
A
n
12
688
A
n
13
689
A
n
14
690
A
n
15
691
A
n
16
692
A
n
17
693
A
n
18
694
A
n
19
695
A
n
20
696
A
n
21
697
A
n
22
698
A
n
23
699
A
n
24
700
A
n
25
701
A
n
26
702
A
n
27
703
A
n
28
704
A
n
29
705
A
n
30
706
A
n
31
707
A
n
32
708
A
n
33
709
A
n
34
710
A
n
35
711
A
MET
712
n
36
MET
712
A
HIS
713
n
37
HIS
713
A
PRO
714
n
38
PRO
714
A
ALA
715
n
39
ALA
715
A
GLY
716
n
40
GLY
716
A
ILE
717
n
41
ILE
717
A
ILE
718
n
42
ILE
718
A
LEU
719
n
43
LEU
719
A
THR
720
n
44
THR
720
A
LYS
721
n
45
LYS
721
A
VAL
722
n
46
VAL
722
A
GLY
723
n
47
GLY
723
A
TYR
724
n
48
TYR
724
A
TYR
725
n
49
TYR
725
A
THR
726
n
50
THR
726
A
ILE
727
n
51
ILE
727
A
PRO
728
n
52
PRO
728
A
SER
729
n
53
SER
729
A
MET
730
n
54
MET
730
A
ASP
731
n
55
ASP
731
A
ASP
732
n
56
ASP
732
A
LEU
733
n
57
LEU
733
A
ALA
734
n
58
ALA
734
A
LYS
735
n
59
LYS
735
A
ILE
736
n
60
ILE
736
A
THR
737
n
61
THR
737
A
ASN
738
n
62
ASN
738
A
GLU
739
n
63
GLU
739
A
LYS
740
n
64
LYS
740
A
GLY
741
n
65
GLY
741
A
GLU
742
n
66
GLU
742
A
CYS
743
n
67
CYS
743
A
ILE
744
n
68
ILE
744
A
VAL
745
n
69
VAL
745
A
SER
746
n
70
SER
746
A
ASP
747
n
71
ASP
747
A
PHE
748
n
72
PHE
748
A
THR
749
n
73
THR
749
A
ILE
750
n
74
ILE
750
A
GLY
751
n
75
GLY
751
A
ARG
752
n
76
ARG
752
A
LYS
753
n
77
LYS
753
A
GLY
754
n
78
GLY
754
A
TYR
755
n
79
TYR
755
A
GLY
756
n
80
GLY
756
A
SER
757
n
81
SER
757
A
ILE
758
n
82
ILE
758
A
TYR
759
n
83
TYR
759
A
PHE
760
n
84
PHE
760
A
GLU
761
n
85
GLU
761
A
GLY
762
n
86
GLY
762
A
ASP
763
n
87
ASP
763
A
VAL
764
n
88
VAL
764
A
ASN
765
n
89
ASN
765
A
LEU
766
n
90
LEU
766
A
THR
767
n
91
THR
767
A
ASN
768
n
92
ASN
768
A
LEU
769
n
93
LEU
769
A
ASN
770
n
94
ASN
770
A
LEU
771
n
95
LEU
771
A
ASP
772
n
96
ASP
772
A
ASP
773
n
97
ASP
773
A
ILE
774
n
98
ILE
774
A
VAL
775
n
99
VAL
775
A
HIS
776
n
100
HIS
776
A
ILE
777
n
101
ILE
777
A
ARG
778
n
102
ARG
778
A
ARG
779
n
103
ARG
779
A
LYS
780
n
104
LYS
780
A
GLU
781
n
105
GLU
781
A
VAL
782
n
106
VAL
782
A
VAL
783
n
107
VAL
783
A
VAL
784
n
108
VAL
784
A
TYR
785
n
109
TYR
785
A
LEU
786
n
110
LEU
786
A
ASP
787
n
111
ASP
787
A
ASP
788
n
112
ASP
788
A
ASN
789
n
113
ASN
789
A
GLN
790
n
114
GLN
790
A
LYS
791
n
115
LYS
791
A
PRO
792
n
116
PRO
792
A
PRO
793
n
117
PRO
793
A
VAL
794
n
118
VAL
794
A
GLY
795
n
119
GLY
795
A
GLU
796
n
120
GLU
796
A
GLY
797
n
121
GLY
797
A
LEU
798
n
122
LEU
798
A
ASN
799
n
123
ASN
799
A
ARG
800
n
124
ARG
800
A
LYS
801
n
125
LYS
801
A
ALA
802
n
126
ALA
802
A
GLU
803
n
127
GLU
803
A
VAL
804
n
128
VAL
804
A
THR
805
n
129
THR
805
A
LEU
806
n
130
LEU
806
A
ASP
807
n
131
ASP
807
A
GLY
808
n
132
GLY
808
A
VAL
809
n
133
VAL
809
A
TRP
810
n
134
TRP
810
A
PRO
811
n
135
PRO
811
A
THR
812
n
136
THR
812
A
ASP
813
n
137
ASP
813
A
LYS
814
n
138
LYS
814
A
THR
815
n
139
THR
815
A
SER
816
n
140
SER
816
A
ARG
817
n
141
ARG
817
A
CYS
818
n
142
CYS
818
A
LEU
819
n
143
LEU
819
A
ILE
820
n
144
ILE
820
A
LYS
821
n
145
LYS
821
A
SER
822
n
146
SER
822
A
PRO
823
n
147
PRO
823
A
ASP
824
n
148
ASP
824
A
ARG
825
n
149
ARG
825
A
LEU
826
n
150
LEU
826
A
ALA
827
n
151
ALA
827
A
ASP
828
n
152
ASP
828
A
ILE
829
n
153
ILE
829
A
ASN
830
n
154
ASN
830
A
TYR
831
n
155
TYR
831
A
GLU
832
n
156
GLU
832
A
GLY
833
n
157
GLY
833
A
ARG
834
n
158
ARG
834
A
LEU
835
n
159
LEU
835
A
GLU
836
n
160
GLU
836
A
ALA
837
n
161
ALA
837
A
VAL
838
n
162
VAL
838
A
SER
839
n
163
SER
839
A
ARG
840
n
164
ARG
840
A
LYS
841
n
165
LYS
841
A
GLN
842
n
166
GLN
842
A
GLY
843
n
167
GLY
843
A
ALA
844
n
168
ALA
844
A
GLN
845
n
169
GLN
845
A
PHE
846
n
170
PHE
846
A
LYS
847
n
171
LYS
847
A
GLU
848
n
172
GLU
848
A
TYR
849
n
173
TYR
849
A
ARG
850
n
174
ARG
850
A
PRO
851
n
175
PRO
851
A
GLU
852
n
176
GLU
852
A
THR
853
n
177
THR
853
A
GLY
854
n
178
GLY
854
A
SER
855
n
179
SER
855
A
TRP
856
n
180
TRP
856
A
VAL
857
n
181
VAL
857
A
PHE
858
n
182
PHE
858
A
LYS
859
n
183
LYS
859
A
VAL
860
n
184
VAL
860
A
SER
861
n
185
SER
861
A
HIS
862
n
186
HIS
862
A
PHE
863
n
187
PHE
863
A
n
1
864
B
LYS
865
n
2
LYS
865
B
TYR
866
n
3
TYR
866
B
GLY
867
n
4
GLY
867
B
LEU
868
n
5
LEU
868
B
GLN
869
n
6
GLN
869
B
ASP
870
n
7
ASP
870
B
n
8
871
B
n
9
872
B
n
10
873
B
n
11
874
B
n
12
875
B
n
13
876
B
n
14
877
B
n
15
878
B
n
16
879
B
n
17
880
B
n
18
881
B
n
19
882
B
n
20
883
B
n
21
884
B
n
22
885
B
n
23
886
B
n
24
887
B
n
25
888
B
n
26
889
B
n
27
890
B
n
28
891
B
n
29
892
B
n
30
893
B
n
31
894
B
n
32
895
B
n
33
896
B
n
34
897
B
n
35
898
B
n
36
899
B
n
37
900
B
n
38
901
B
n
39
902
B
n
40
903
B
n
41
904
B
n
42
905
B
n
43
906
B
n
44
907
B
n
45
908
B
n
46
909
B
n
47
910
B
n
48
911
B
n
49
912
B
n
50
913
B
n
51
914
B
n
52
915
B
n
53
916
B
n
54
917
B
n
55
918
B
n
56
919
B
n
57
920
B
n
58
921
B
n
59
922
B
n
60
923
B
n
61
924
B
n
62
925
B
n
63
926
B
n
64
927
B
n
1
677
C
n
2
678
C
n
3
679
C
n
4
680
C
n
5
681
C
n
6
682
C
n
7
683
C
n
8
684
C
n
9
685
C
n
10
686
C
n
11
687
C
n
12
688
C
n
13
689
C
n
14
690
C
n
15
691
C
n
16
692
C
n
17
693
C
n
18
694
C
n
19
695
C
n
20
696
C
n
21
697
C
n
22
698
C
n
23
699
C
n
24
700
C
n
25
701
C
n
26
702
C
n
27
703
C
n
28
704
C
n
29
705
C
n
30
706
C
n
31
707
C
n
32
708
C
n
33
709
C
n
34
710
C
n
35
711
C
n
36
712
C
HIS
713
n
37
HIS
713
C
PRO
714
n
38
PRO
714
C
ALA
715
n
39
ALA
715
C
GLY
716
n
40
GLY
716
C
ILE
717
n
41
ILE
717
C
ILE
718
n
42
ILE
718
C
LEU
719
n
43
LEU
719
C
THR
720
n
44
THR
720
C
LYS
721
n
45
LYS
721
C
VAL
722
n
46
VAL
722
C
GLY
723
n
47
GLY
723
C
TYR
724
n
48
TYR
724
C
TYR
725
n
49
TYR
725
C
THR
726
n
50
THR
726
C
ILE
727
n
51
ILE
727
C
PRO
728
n
52
PRO
728
C
SER
729
n
53
SER
729
C
MET
730
n
54
MET
730
C
ASP
731
n
55
ASP
731
C
ASP
732
n
56
ASP
732
C
LEU
733
n
57
LEU
733
C
ALA
734
n
58
ALA
734
C
LYS
735
n
59
LYS
735
C
ILE
736
n
60
ILE
736
C
THR
737
n
61
THR
737
C
ASN
738
n
62
ASN
738
C
n
63
739
C
n
64
740
C
n
65
741
C
GLU
742
n
66
GLU
742
C
CYS
743
n
67
CYS
743
C
ILE
744
n
68
ILE
744
C
VAL
745
n
69
VAL
745
C
SER
746
n
70
SER
746
C
ASP
747
n
71
ASP
747
C
PHE
748
n
72
PHE
748
C
THR
749
n
73
THR
749
C
ILE
750
n
74
ILE
750
C
GLY
751
n
75
GLY
751
C
ARG
752
n
76
ARG
752
C
LYS
753
n
77
LYS
753
C
GLY
754
n
78
GLY
754
C
TYR
755
n
79
TYR
755
C
GLY
756
n
80
GLY
756
C
SER
757
n
81
SER
757
C
ILE
758
n
82
ILE
758
C
TYR
759
n
83
TYR
759
C
PHE
760
n
84
PHE
760
C
GLU
761
n
85
GLU
761
C
GLY
762
n
86
GLY
762
C
ASP
763
n
87
ASP
763
C
VAL
764
n
88
VAL
764
C
ASN
765
n
89
ASN
765
C
LEU
766
n
90
LEU
766
C
THR
767
n
91
THR
767
C
ASN
768
n
92
ASN
768
C
LEU
769
n
93
LEU
769
C
ASN
770
n
94
ASN
770
C
LEU
771
n
95
LEU
771
C
ASP
772
n
96
ASP
772
C
ASP
773
n
97
ASP
773
C
ILE
774
n
98
ILE
774
C
VAL
775
n
99
VAL
775
C
HIS
776
n
100
HIS
776
C
ILE
777
n
101
ILE
777
C
ARG
778
n
102
ARG
778
C
ARG
779
n
103
ARG
779
C
LYS
780
n
104
LYS
780
C
GLU
781
n
105
GLU
781
C
VAL
782
n
106
VAL
782
C
VAL
783
n
107
VAL
783
C
VAL
784
n
108
VAL
784
C
TYR
785
n
109
TYR
785
C
LEU
786
n
110
LEU
786
C
ASP
787
n
111
ASP
787
C
ASP
788
n
112
ASP
788
C
ASN
789
n
113
ASN
789
C
GLN
790
n
114
GLN
790
C
LYS
791
n
115
LYS
791
C
PRO
792
n
116
PRO
792
C
PRO
793
n
117
PRO
793
C
VAL
794
n
118
VAL
794
C
GLY
795
n
119
GLY
795
C
GLU
796
n
120
GLU
796
C
GLY
797
n
121
GLY
797
C
LEU
798
n
122
LEU
798
C
ASN
799
n
123
ASN
799
C
ARG
800
n
124
ARG
800
C
LYS
801
n
125
LYS
801
C
ALA
802
n
126
ALA
802
C
GLU
803
n
127
GLU
803
C
VAL
804
n
128
VAL
804
C
THR
805
n
129
THR
805
C
LEU
806
n
130
LEU
806
C
ASP
807
n
131
ASP
807
C
GLY
808
n
132
GLY
808
C
VAL
809
n
133
VAL
809
C
TRP
810
n
134
TRP
810
C
PRO
811
n
135
PRO
811
C
THR
812
n
136
THR
812
C
ASP
813
n
137
ASP
813
C
LYS
814
n
138
LYS
814
C
THR
815
n
139
THR
815
C
SER
816
n
140
SER
816
C
ARG
817
n
141
ARG
817
C
CYS
818
n
142
CYS
818
C
LEU
819
n
143
LEU
819
C
ILE
820
n
144
ILE
820
C
LYS
821
n
145
LYS
821
C
SER
822
n
146
SER
822
C
PRO
823
n
147
PRO
823
C
ASP
824
n
148
ASP
824
C
ARG
825
n
149
ARG
825
C
LEU
826
n
150
LEU
826
C
ALA
827
n
151
ALA
827
C
ASP
828
n
152
ASP
828
C
ILE
829
n
153
ILE
829
C
ASN
830
n
154
ASN
830
C
TYR
831
n
155
TYR
831
C
GLU
832
n
156
GLU
832
C
GLY
833
n
157
GLY
833
C
ARG
834
n
158
ARG
834
C
LEU
835
n
159
LEU
835
C
GLU
836
n
160
GLU
836
C
ALA
837
n
161
ALA
837
C
VAL
838
n
162
VAL
838
C
SER
839
n
163
SER
839
C
ARG
840
n
164
ARG
840
C
LYS
841
n
165
LYS
841
C
GLN
842
n
166
GLN
842
C
GLY
843
n
167
GLY
843
C
ALA
844
n
168
ALA
844
C
GLN
845
n
169
GLN
845
C
PHE
846
n
170
PHE
846
C
LYS
847
n
171
LYS
847
C
GLU
848
n
172
GLU
848
C
TYR
849
n
173
TYR
849
C
ARG
850
n
174
ARG
850
C
PRO
851
n
175
PRO
851
C
GLU
852
n
176
GLU
852
C
THR
853
n
177
THR
853
C
GLY
854
n
178
GLY
854
C
SER
855
n
179
SER
855
C
TRP
856
n
180
TRP
856
C
VAL
857
n
181
VAL
857
C
PHE
858
n
182
PHE
858
C
LYS
859
n
183
LYS
859
C
VAL
860
n
184
VAL
860
C
SER
861
n
185
SER
861
C
HIS
862
n
186
HIS
862
C
PHE
863
n
187
PHE
863
C
n
1
864
D
LYS
865
n
2
LYS
865
D
TYR
866
n
3
TYR
866
D
GLY
867
n
4
GLY
867
D
LEU
868
n
5
LEU
868
D
GLN
869
n
6
GLN
869
D
ASP
870
n
7
ASP
870
D
n
8
871
D
n
9
872
D
n
10
873
D
n
11
874
D
n
12
875
D
n
13
876
D
n
14
877
D
n
15
878
D
n
16
879
D
n
17
880
D
n
18
881
D
n
19
882
D
n
20
883
D
n
21
884
D
n
22
885
D
n
23
886
D
n
24
887
D
n
25
888
D
n
26
889
D
n
27
890
D
n
28
891
D
n
29
892
D
n
30
893
D
n
31
894
D
n
32
895
D
n
33
896
D
n
34
897
D
n
35
898
D
n
36
899
D
n
37
900
D
n
38
901
D
n
39
902
D
n
40
903
D
n
41
904
D
n
42
905
D
n
43
906
D
n
44
907
D
n
45
908
D
n
46
909
D
n
47
910
D
n
48
911
D
n
49
912
D
n
50
913
D
n
51
914
D
n
52
915
D
n
53
916
D
n
54
917
D
n
55
918
D
n
56
919
D
n
57
920
D
n
58
921
D
n
59
922
D
n
60
923
D
n
61
924
D
n
62
925
D
n
63
926
D
n
64
927
D
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
725
A
N
TYR
49
A
O
GLY
751
A
O
GLY
75
A
N
PHE
748
A
N
PHE
72
A
O
PHE
760
A
O
PHE
84
A
N
TYR
759
A
N
TYR
83
A
O
GLU
803
A
O
GLU
127
A
N
VAL
804
A
N
VAL
128
A
O
PHE
858
A
O
PHE
182
A
O
LYS
859
A
O
LYS
183
A
N
GLN
845
A
N
GLN
169
A
N
VAL
745
A
N
VAL
69
A
O
VAL
764
A
O
VAL
88
A
N
HIS
776
A
N
HIS
100
A
O
VAL
783
A
O
VAL
107
A
N
VAL
782
A
N
VAL
106
B
O
TYR
866
B
O
TYR
3
C
N
TYR
725
C
N
TYR
49
C
O
GLY
751
C
O
GLY
75
C
N
PHE
748
C
N
PHE
72
C
O
PHE
760
C
O
PHE
84
C
N
TYR
759
C
N
TYR
83
C
O
GLU
803
C
O
GLU
127
C
N
VAL
804
C
N
VAL
128
C
O
PHE
858
C
O
PHE
182
C
O
LYS
859
C
O
LYS
183
C
N
GLN
845
C
N
GLN
169
C
N
HIS
776
C
N
HIS
100
C
O
VAL
783
C
O
VAL
107
C
N
VAL
782
C
N
VAL
106
D
O
TYR
866
D
O
TYR
3
1
A
CG
MET
712
A
CG
MET
36
1
Y
1
A
SD
MET
712
A
SD
MET
36
1
Y
1
A
CE
MET
712
A
CE
MET
36
1
Y
1
A
CG
LYS
814
A
CG
LYS
138
1
Y
1
A
CD
LYS
814
A
CD
LYS
138
1
Y
1
A
CE
LYS
814
A
CE
LYS
138
1
Y
1
A
NZ
LYS
814
A
NZ
LYS
138
1
Y
1
C
OG1
THR
737
C
OG1
THR
61
1
Y
1
C
CG2
THR
737
C
CG2
THR
61
1
Y
1
D
CG
ASP
870
D
CG
ASP
7
1
Y
1
D
OD1
ASP
870
D
OD1
ASP
7
1
Y
1
D
OD2
ASP
870
D
OD2
ASP
7
1
Y
1
A
MET
677
A
MET
1
1
Y
1
A
ALA
678
A
ALA
2
1
Y
1
A
ALA
679
A
ALA
3
1
Y
1
A
LEU
680
A
LEU
4
1
Y
1
A
ARG
681
A
ARG
5
1
Y
1
A
ASN
682
A
ASN
6
1
Y
1
A
GLY
683
A
GLY
7
1
Y
1
A
LEU
684
A
LEU
8
1
Y
1
A
GLU
685
A
GLU
9
1
Y
1
A
GLY
686
A
GLY
10
1
Y
1
A
SER
687
A
SER
11
1
Y
1
A
SER
688
A
SER
12
1
Y
1
A
GLU
689
A
GLU
13
1
Y
1
A
GLU
690
A
GLU
14
1
Y
1
A
THR
691
A
THR
15
1
Y
1
A
SER
692
A
SER
16
1
Y
1
A
PHE
693
A
PHE
17
1
Y
1
A
HIS
694
A
HIS
18
1
Y
1
A
ASP
695
A
ASP
19
1
Y
1
A
GLU
696
A
GLU
20
1
Y
1
A
SER
697
A
SER
21
1
Y
1
A
LEU
698
A
LEU
22
1
Y
1
A
GLN
699
A
GLN
23
1
Y
1
A
ASP
700
A
ASP
24
1
Y
1
A
ASP
701
A
ASP
25
1
Y
1
A
ARG
702
A
ARG
26
1
Y
1
A
GLU
703
A
GLU
27
1
Y
1
A
GLU
704
A
GLU
28
1
Y
1
A
ILE
705
A
ILE
29
1
Y
1
A
GLU
706
A
GLU
30
1
Y
1
A
ASN
707
A
ASN
31
1
Y
1
A
ASN
708
A
ASN
32
1
Y
1
A
SER
709
A
SER
33
1
Y
1
A
TYR
710
A
TYR
34
1
Y
1
A
HIS
711
A
HIS
35
1
Y
1
B
SER
864
B
SER
1
1
Y
1
B
SER
871
B
SER
8
1
Y
1
B
ASP
872
B
ASP
9
1
Y
1
B
GLU
873
B
GLU
10
1
Y
1
B
GLU
874
B
GLU
11
1
Y
1
B
GLU
875
B
GLU
12
1
Y
1
B
GLU
876
B
GLU
13
1
Y
1
B
GLU
877
B
GLU
14
1
Y
1
B
HIS
878
B
HIS
15
1
Y
1
B
PRO
879
B
PRO
16
1
Y
1
B
SER
880
B
SER
17
1
Y
1
B
LYS
881
B
LYS
18
1
Y
1
B
THR
882
B
THR
19
1
Y
1
B
SER
883
B
SER
20
1
Y
1
B
THR
884
B
THR
21
1
Y
1
B
LYS
885
B
LYS
22
1
Y
1
B
LYS
886
B
LYS
23
1
Y
1
B
LEU
887
B
LEU
24
1
Y
1
B
LYS
888
B
LYS
25
1
Y
1
B
THR
889
B
THR
26
1
Y
1
B
ALA
890
B
ALA
27
1
Y
1
B
PRO
891
B
PRO
28
1
Y
1
B
LEU
892
B
LEU
29
1
Y
1
B
PRO
893
B
PRO
30
1
Y
1
B
PRO
894
B
PRO
31
1
Y
1
B
ALA
895
B
ALA
32
1
Y
1
B
SER
896
B
SER
33
1
Y
1
B
GLN
897
B
GLN
34
1
Y
1
B
THR
898
B
THR
35
1
Y
1
B
THR
899
B
THR
36
1
Y
1
B
PRO
900
B
PRO
37
1
Y
1
B
LEU
901
B
LEU
38
1
Y
1
B
GLN
902
B
GLN
39
1
Y
1
B
MET
903
B
MET
40
1
Y
1
B
ALA
904
B
ALA
41
1
Y
1
B
LEU
905
B
LEU
42
1
Y
1
B
ASN
906
B
ASN
43
1
Y
1
B
GLY
907
B
GLY
44
1
Y
1
B
LYS
908
B
LYS
45
1
Y
1
B
PRO
909
B
PRO
46
1
Y
1
B
ALA
910
B
ALA
47
1
Y
1
B
PRO
911
B
PRO
48
1
Y
1
B
PRO
912
B
PRO
49
1
Y
1
B
PRO
913
B
PRO
50
1
Y
1
B
GLN
914
B
GLN
51
1
Y
1
B
VAL
915
B
VAL
52
1
Y
1
B
GLU
916
B
GLU
53
1
Y
1
B
LYS
917
B
LYS
54
1
Y
1
B
LYS
918
B
LYS
55
1
Y
1
B
GLY
919
B
GLY
56
1
Y
1
B
GLN
920
B
GLN
57
1
Y
1
B
LEU
921
B
LEU
58
1
Y
1
B
GLU
922
B
GLU
59
1
Y
1
B
HIS
923
B
HIS
60
1
Y
1
B
HIS
924
B
HIS
61
1
Y
1
B
HIS
925
B
HIS
62
1
Y
1
B
HIS
926
B
HIS
63
1
Y
1
B
HIS
927
B
HIS
64
1
Y
1
C
MET
677
C
MET
1
1
Y
1
C
ALA
678
C
ALA
2
1
Y
1
C
ALA
679
C
ALA
3
1
Y
1
C
LEU
680
C
LEU
4
1
Y
1
C
ARG
681
C
ARG
5
1
Y
1
C
ASN
682
C
ASN
6
1
Y
1
C
GLY
683
C
GLY
7
1
Y
1
C
LEU
684
C
LEU
8
1
Y
1
C
GLU
685
C
GLU
9
1
Y
1
C
GLY
686
C
GLY
10
1
Y
1
C
SER
687
C
SER
11
1
Y
1
C
SER
688
C
SER
12
1
Y
1
C
GLU
689
C
GLU
13
1
Y
1
C
GLU
690
C
GLU
14
1
Y
1
C
THR
691
C
THR
15
1
Y
1
C
SER
692
C
SER
16
1
Y
1
C
PHE
693
C
PHE
17
1
Y
1
C
HIS
694
C
HIS
18
1
Y
1
C
ASP
695
C
ASP
19
1
Y
1
C
GLU
696
C
GLU
20
1
Y
1
C
SER
697
C
SER
21
1
Y
1
C
LEU
698
C
LEU
22
1
Y
1
C
GLN
699
C
GLN
23
1
Y
1
C
ASP
700
C
ASP
24
1
Y
1
C
ASP
701
C
ASP
25
1
Y
1
C
ARG
702
C
ARG
26
1
Y
1
C
GLU
703
C
GLU
27
1
Y
1
C
GLU
704
C
GLU
28
1
Y
1
C
ILE
705
C
ILE
29
1
Y
1
C
GLU
706
C
GLU
30
1
Y
1
C
ASN
707
C
ASN
31
1
Y
1
C
ASN
708
C
ASN
32
1
Y
1
C
SER
709
C
SER
33
1
Y
1
C
TYR
710
C
TYR
34
1
Y
1
C
HIS
711
C
HIS
35
1
Y
1
C
MET
712
C
MET
36
1
Y
1
C
GLU
739
C
GLU
63
1
Y
1
C
LYS
740
C
LYS
64
1
Y
1
C
GLY
741
C
GLY
65
1
Y
1
D
SER
864
D
SER
1
1
Y
1
D
SER
871
D
SER
8
1
Y
1
D
ASP
872
D
ASP
9
1
Y
1
D
GLU
873
D
GLU
10
1
Y
1
D
GLU
874
D
GLU
11
1
Y
1
D
GLU
875
D
GLU
12
1
Y
1
D
GLU
876
D
GLU
13
1
Y
1
D
GLU
877
D
GLU
14
1
Y
1
D
HIS
878
D
HIS
15
1
Y
1
D
PRO
879
D
PRO
16
1
Y
1
D
SER
880
D
SER
17
1
Y
1
D
LYS
881
D
LYS
18
1
Y
1
D
THR
882
D
THR
19
1
Y
1
D
SER
883
D
SER
20
1
Y
1
D
THR
884
D
THR
21
1
Y
1
D
LYS
885
D
LYS
22
1
Y
1
D
LYS
886
D
LYS
23
1
Y
1
D
LEU
887
D
LEU
24
1
Y
1
D
LYS
888
D
LYS
25
1
Y
1
D
THR
889
D
THR
26
1
Y
1
D
ALA
890
D
ALA
27
1
Y
1
D
PRO
891
D
PRO
28
1
Y
1
D
LEU
892
D
LEU
29
1
Y
1
D
PRO
893
D
PRO
30
1
Y
1
D
PRO
894
D
PRO
31
1
Y
1
D
ALA
895
D
ALA
32
1
Y
1
D
SER
896
D
SER
33
1
Y
1
D
GLN
897
D
GLN
34
1
Y
1
D
THR
898
D
THR
35
1
Y
1
D
THR
899
D
THR
36
1
Y
1
D
PRO
900
D
PRO
37
1
Y
1
D
LEU
901
D
LEU
38
1
Y
1
D
GLN
902
D
GLN
39
1
Y
1
D
MET
903
D
MET
40
1
Y
1
D
ALA
904
D
ALA
41
1
Y
1
D
LEU
905
D
LEU
42
1
Y
1
D
ASN
906
D
ASN
43
1
Y
1
D
GLY
907
D
GLY
44
1
Y
1
D
LYS
908
D
LYS
45
1
Y
1
D
PRO
909
D
PRO
46
1
Y
1
D
ALA
910
D
ALA
47
1
Y
1
D
PRO
911
D
PRO
48
1
Y
1
D
PRO
912
D
PRO
49
1
Y
1
D
PRO
913
D
PRO
50
1
Y
1
D
GLN
914
D
GLN
51
1
Y
1
D
VAL
915
D
VAL
52
1
Y
1
D
GLU
916
D
GLU
53
1
Y
1
D
LYS
917
D
LYS
54
1
Y
1
D
LYS
918
D
LYS
55
1
Y
1
D
GLY
919
D
GLY
56
1
Y
1
D
GLN
920
D
GLN
57
1
Y
1
D
LEU
921
D
LEU
58
1
Y
1
D
GLU
922
D
GLU
59
1
Y
1
D
HIS
923
D
HIS
60
1
Y
1
D
HIS
924
D
HIS
61
1
Y
1
D
HIS
925
D
HIS
62
1
Y
1
D
HIS
926
D
HIS
63
1
Y
1
D
HIS
927
D
HIS
64
1
Y
1
B
C
OD2
NE2
ASP
GLN
870
845
1.61
1
A
B
NZ
OD1
LYS
ASP
780
870
2.19
1
C
GLU
761
-10.96
1
C
C
C
N
GLU
GLY
761
762
1.19
1
-11.81
1.70
123.20
111.39
C
C
C
O
C
N
GLU
GLU
GLY
761
761
762
Y
1
C
C
C
N
GLU
GLY
761
762
-0.141
0.023
1.336
1.195
Y
1
A
C
NH1
CG
ARG
LEU
840
819
0.98
1_555
5_655
1
A
C
NH2
CA
ARG
LEU
840
819
1.50
1_555
5_655
1
A
C
NH1
CD2
ARG
LEU
840
819
1.72
1_555
5_655
1
A
C
NH1
CB
ARG
LEU
840
819
1.76
1_555
5_655
1
A
C
NH2
N
ARG
LEU
840
819
1.78
1_555
5_655
1
A
C
CZ
CA
ARG
LEU
840
819
2.13
1_555
5_655
1
A
C
CZ
N
ARG
LEU
840
819
2.17
1_555
5_655
1
A
HIS
713
-11.11
129.65
1
A
GLU
739
-69.83
0.80
1
A
ASP
747
37.61
86.62
1
A
LYS
753
-37.56
120.44
1
A
THR
767
-39.05
121.75
1
A
GLU
781
174.55
119.98
1
A
TYR
785
61.73
95.28
1
A
LEU
786
-47.38
-90.87
1
A
ASP
788
-61.75
56.75
1
A
ARG
800
-80.38
-159.29
1
A
THR
815
-60.69
-85.08
1
A
LEU
819
63.72
179.54
1
A
GLU
848
-165.75
-168.03
1
B
GLN
869
-89.27
33.48
1
C
PRO
714
-4.62
-73.96
1
C
ALA
715
-107.23
66.19
1
C
LEU
719
-160.42
104.07
1
C
SER
729
-49.01
157.39
1
C
ASP
731
-51.10
-82.84
1
C
LEU
733
-58.71
11.12
1
C
ALA
734
-103.52
-65.88
1
C
LYS
735
-60.50
5.77
1
C
CYS
743
-176.73
59.50
1
C
TYR
755
-102.48
-65.56
1
C
ASP
763
-37.49
124.59
1
C
THR
767
1.88
-78.91
1
C
ASN
770
-107.32
69.42
1
C
ARG
779
-36.38
123.83
1
C
GLU
781
-173.92
111.10
1
C
TYR
785
71.22
100.75
1
C
LEU
786
-53.03
-72.01
1
C
ASP
788
-40.90
-4.44
1
C
LYS
791
-32.74
90.78
1
C
PRO
792
-50.94
175.36
1
C
ARG
800
-71.15
-164.62
1
C
LEU
819
72.96
138.71
1
C
ASN
830
39.94
56.72
0.271
0.247
3.00
30.0
3079
30782
Random
1
THROUGHOUT
2.0
Molecular Replacement+MIR
Engh & Huber
3.00
30.0
0
2480
0
0
2480
2.80
50.0
1KO6
41000
2.0
0
1
97.2
2.80
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Crystal Structure of C-terminal Autoproteolytic Domain of Nucleoporin Nup98
1
N
N
2
N
N
1
N
N
2
N
N
A
SER
729
A
SER
53
HELX_P
A
THR
737
A
THR
61
1
1
9
A
ASN
770
A
ASN
94
HELX_P
A
ILE
774
A
ILE
98
1
2
5
A
SER
822
A
SER
146
HELX_P
A
ASN
830
A
ASN
154
1
3
9
A
ASN
830
A
ASN
154
HELX_P
A
GLN
842
A
GLN
166
1
4
13
A
PRO
851
A
PRO
175
HELX_P
A
GLY
854
A
GLY
178
5
5
4
C
ASP
731
C
ASP
55
HELX_P
C
ILE
736
C
ILE
60
1
6
6
C
ASN
770
C
ASN
94
HELX_P
C
ILE
774
C
ILE
98
1
7
5
C
GLU
796
C
GLU
120
HELX_P
C
ARG
800
C
ARG
124
5
8
5
C
SER
822
C
SER
146
HELX_P
C
ILE
829
C
ILE
153
1
9
8
C
ASN
830
C
ASN
154
HELX_P
C
GLN
842
C
GLN
166
1
10
13
TRANSFERASE
nucleoporin, autoproteolysis, nuclear pore, TRANSFERASE
A
ILE
727
A
ILE
51
1
A
PRO
728
A
PRO
52
0.18
C
ILE
727
C
ILE
51
1
C
PRO
728
C
PRO
52
0.11
NUP98_HUMAN
UNP
1
677
P52948
RAALRNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYG
SIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLE
AVSRKQGAQFKEYRPETGSWVFKVSHF
NU98_HUMAN
UNP
2
864
P52948
SKYGLQDSDEEEEEHPSKTSTKKLKTAPLPPASQTTPLQMALNGKPAPPPQVEKKGQ
678
863
1KO6
678
863
P52948
A
1
2
187
678
863
1KO6
678
863
P52948
C
1
2
187
864
920
1KO6
864
920
P52948
B
2
1
57
864
920
1KO6
864
920
P52948
D
2
1
57
1
initiating methionine
MET
677
1KO6
A
P52948
UNP
1
2
initiating methionine
MET
677
1KO6
C
P52948
UNP
1
3
expression tag
LEU
921
1KO6
B
P52948
UNP
58
3
expression tag
GLU
922
1KO6
B
P52948
UNP
59
3
expression tag
HIS
923
1KO6
B
P52948
UNP
60
3
expression tag
HIS
924
1KO6
B
P52948
UNP
61
3
expression tag
HIS
925
1KO6
B
P52948
UNP
62
3
expression tag
HIS
926
1KO6
B
P52948
UNP
63
3
expression tag
HIS
927
1KO6
B
P52948
UNP
64
4
expression tag
LEU
921
1KO6
D
P52948
UNP
58
4
expression tag
GLU
922
1KO6
D
P52948
UNP
59
4
expression tag
HIS
923
1KO6
D
P52948
UNP
60
4
expression tag
HIS
924
1KO6
D
P52948
UNP
61
4
expression tag
HIS
925
1KO6
D
P52948
UNP
62
4
expression tag
HIS
926
1KO6
D
P52948
UNP
63
4
expression tag
HIS
927
1KO6
D
P52948
UNP
64
6
2
3
6
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
724
A
TYR
48
A
ILE
727
A
ILE
51
A
PHE
748
A
PHE
72
A
ARG
752
A
ARG
76
A
GLY
756
A
GLY
80
A
PHE
760
A
PHE
84
A
ALA
802
A
ALA
126
A
LEU
806
A
LEU
130
A
SER
855
A
SER
179
A
VAL
860
A
VAL
184
A
GLN
845
A
GLN
169
A
ARG
850
A
ARG
174
A
ILE
744
A
ILE
68
A
VAL
745
A
VAL
69
A
VAL
764
A
VAL
88
A
ASN
765
A
ASN
89
A
VAL
775
A
VAL
99
A
ARG
778
A
ARG
102
A
GLU
781
A
GLU
105
A
VAL
784
A
VAL
108
B
TYR
866
B
TYR
3
B
GLY
867
B
GLY
4
C
TYR
724
C
TYR
48
C
ILE
727
C
ILE
51
C
PHE
748
C
PHE
72
C
ARG
752
C
ARG
76
C
GLY
756
C
GLY
80
C
PHE
760
C
PHE
84
C
ALA
802
C
ALA
126
C
LEU
806
C
LEU
130
C
SER
855
C
SER
179
C
VAL
860
C
VAL
184
C
GLN
845
C
GLN
169
C
ARG
850
C
ARG
174
C
VAL
775
C
VAL
99
C
ARG
778
C
ARG
102
C
GLU
781
C
GLU
105
C
VAL
784
C
VAL
108
D
TYR
866
D
TYR
3
D
GLY
867
D
GLY
4
92
P 41 21 2