0.022326 0.000000 0.007990 0.000000 0.011221 0.000000 0.000000 0.000000 0.020599 0.00000 0.00000 0.00000 Kraft, L. Sprenger, G.A. Lindqvist, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 109.69 90.00 44.790 89.120 51.560 C6 H13 O10 P 276.135 6-PHOSPHOGLUCONIC ACID D-saccharide C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 R C N 3 S C N 4 R C N 5 R C N 6 N C N 7 N O N 8 N O N 9 N O N 10 N O N 11 N O N 12 N O N 13 N O N 14 N P N 15 N O N 16 N O N 17 N O N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C N 36 N O N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N N N 45 S C N 46 N C N 47 N O N 48 N C N 49 N C N 50 N C N 51 N N N 52 N C N 53 N N N 54 N N N 55 N O N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N N N 72 S C N 73 N C N 74 N O N 75 N C N 76 N C N 77 N O N 78 N N N 79 N O N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N O N 95 N O N 96 N O N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N N N 105 R C N 106 N C N 107 N O N 108 N C N 109 N S N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N N N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C N 143 N C N 144 N C N 145 N O N 146 N O N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N N N 158 N C N 159 N C N 160 N O N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N N N 168 S C N 169 N C N 170 N O N 171 N C Y 172 N C Y 173 N N Y 174 N C Y 175 N C Y 176 N N N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N O N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 S C N 196 N C N 197 N C N 198 N C N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N C N 243 N N N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N S N 267 N C N 268 N O N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N MG N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N C N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C N 326 N O N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 R C N 340 N O N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N N Y 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N doub N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing Y 169 N sing Y 170 N doub Y 171 N doub N 172 N sing Y 173 N sing N 174 N sing Y 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N sing Y 279 N sing N 280 N sing Y 281 N doub N 282 N sing Y 283 N doub N 284 N sing Y 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 318 1057 1069 10.1016/S0022-2836(02)00215-2 12054802 Conformational changes during the catalytic cycle of gluconate kinase as revealed by X-ray crystallography. 2002 10.2210/pdb1ko8/pdb pdb_00001ko8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-06-20 BRUKER SMART 1000 SINGLE WAVELENGTH M x-ray 1 1.093 1.0 I711 MAX II 1.093 SYNCHROTRON MAX II BEAMLINE I711 19572.295 Gluconate kinase 2.7.1.12 2 man polymer 276.135 6-PHOSPHOGLUCONIC ACID 2 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 34 nat water Thermoresistant gluconokinase no no MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN KVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL EGVVASTIEVIKKGK MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN KVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL EGVVASTIEVIKKGK A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample gntk 562 Escherichia coli 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pJF119EH 1 2.47 50.29 VAPOR DIFFUSION, HANGING DROP 7.2 PEG6000, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 diffrn_source pdbx_unobs_or_zero_occ_atoms refine reflns chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms refine_hist struct_conn struct_site repository Initial release Version format compliance Version format compliance Advisory Data collection Refinement description Advisory Data collection Database references Derived calculations Refinement description 1 0 2002-05-29 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-05-16 1 4 2024-03-13 _diffrn_source.pdbx_synchrotron_site _refine.ls_d_res_low _reflns.d_resolution_low _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _refine_hist.d_res_low _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1KNQ contains the same protein, space group P212121. 1KO1 contains the same protein, space group C2. 1KO4 contains the same protein, space group P21212. 1KO5 contains the same protein complexed with ATP. 1KOF contains the same protein complexed with AMPPCP. RCSB Y PDBJ 2001-12-20 REL REL 6PG 6-PHOSPHOGLUCONIC ACID MG MAGNESIUM ION HOH water 6PG 502 2 6PG 6PG 502 A MG 201 3 MG MG 201 A 6PG 503 2 6PG 6PG 503 B HOH 1 4 HOH HOH 503 A HOH 2 4 HOH HOH 504 A HOH 3 4 HOH HOH 505 A HOH 6 4 HOH HOH 506 A HOH 7 4 HOH HOH 507 A HOH 8 4 HOH HOH 508 A HOH 9 4 HOH HOH 509 A HOH 12 4 HOH HOH 510 A HOH 15 4 HOH HOH 511 A HOH 16 4 HOH HOH 512 A HOH 17 4 HOH HOH 513 A HOH 18 4 HOH HOH 514 A HOH 19 4 HOH HOH 515 A HOH 20 4 HOH HOH 516 A HOH 24 4 HOH HOH 517 A HOH 30 4 HOH HOH 518 A HOH 31 4 HOH HOH 519 A HOH 32 4 HOH HOH 520 A HOH 34 4 HOH HOH 521 A HOH 4 4 HOH HOH 504 B HOH 5 4 HOH HOH 505 B HOH 10 4 HOH HOH 506 B HOH 11 4 HOH HOH 507 B HOH 13 4 HOH HOH 508 B HOH 14 4 HOH HOH 509 B HOH 21 4 HOH HOH 510 B HOH 22 4 HOH HOH 511 B HOH 23 4 HOH HOH 512 B HOH 25 4 HOH HOH 513 B HOH 26 4 HOH HOH 514 B HOH 27 4 HOH HOH 515 B HOH 28 4 HOH HOH 516 B HOH 29 4 HOH HOH 517 B HOH 33 4 HOH HOH 518 B n 1 1 A n 2 2 A THR 3 n 3 THR 3 A THR 4 n 4 THR 4 A ASN 5 n 5 ASN 5 A HIS 6 n 6 HIS 6 A ASP 7 n 7 ASP 7 A HIS 8 n 8 HIS 8 A HIS 9 n 9 HIS 9 A ILE 10 n 10 ILE 10 A TYR 11 n 11 TYR 11 A VAL 12 n 12 VAL 12 A LEU 13 n 13 LEU 13 A MET 14 n 14 MET 14 A GLY 15 n 15 GLY 15 A VAL 16 n 16 VAL 16 A SER 17 n 17 SER 17 A GLY 18 n 18 GLY 18 A SER 19 n 19 SER 19 A GLY 20 n 20 GLY 20 A LYS 21 n 21 LYS 21 A SER 22 n 22 SER 22 A ALA 23 n 23 ALA 23 A VAL 24 n 24 VAL 24 A ALA 25 n 25 ALA 25 A SER 26 n 26 SER 26 A GLU 27 n 27 GLU 27 A VAL 28 n 28 VAL 28 A ALA 29 n 29 ALA 29 A HIS 30 n 30 HIS 30 A GLN 31 n 31 GLN 31 A LEU 32 n 32 LEU 32 A HIS 33 n 33 HIS 33 A ALA 34 n 34 ALA 34 A ALA 35 n 35 ALA 35 A PHE 36 n 36 PHE 36 A LEU 37 n 37 LEU 37 A ASP 38 n 38 ASP 38 A GLY 39 n 39 GLY 39 A ASP 40 n 40 ASP 40 A PHE 41 n 41 PHE 41 A LEU 42 n 42 LEU 42 A HIS 43 n 43 HIS 43 A PRO 44 n 44 PRO 44 A ARG 45 n 45 ARG 45 A ARG 46 n 46 ARG 46 A ASN 47 n 47 ASN 47 A ILE 48 n 48 ILE 48 A GLU 49 n 49 GLU 49 A LYS 50 n 50 LYS 50 A MET 51 n 51 MET 51 A ALA 52 n 52 ALA 52 A SER 53 n 53 SER 53 A GLY 54 n 54 GLY 54 A GLU 55 n 55 GLU 55 A PRO 56 n 56 PRO 56 A LEU 57 n 57 LEU 57 A ASN 58 n 58 ASN 58 A ASP 59 n 59 ASP 59 A ASP 60 n 60 ASP 60 A ASP 61 n 61 ASP 61 A ARG 62 n 62 ARG 62 A LYS 63 n 63 LYS 63 A PRO 64 n 64 PRO 64 A TRP 65 n 65 TRP 65 A LEU 66 n 66 LEU 66 A GLN 67 n 67 GLN 67 A ALA 68 n 68 ALA 68 A LEU 69 n 69 LEU 69 A ASN 70 n 70 ASN 70 A ASP 71 n 71 ASP 71 A ALA 72 n 72 ALA 72 A ALA 73 n 73 ALA 73 A PHE 74 n 74 PHE 74 A ALA 75 n 75 ALA 75 A MET 76 n 76 MET 76 A GLN 77 n 77 GLN 77 A ARG 78 n 78 ARG 78 A THR 79 n 79 THR 79 A ASN 80 n 80 ASN 80 A LYS 81 n 81 LYS 81 A VAL 82 n 82 VAL 82 A SER 83 n 83 SER 83 A LEU 84 n 84 LEU 84 A ILE 85 n 85 ILE 85 A VAL 86 n 86 VAL 86 A CYS 87 n 87 CYS 87 A SER 88 n 88 SER 88 A ALA 89 n 89 ALA 89 A LEU 90 n 90 LEU 90 A LYS 91 n 91 LYS 91 A LYS 92 n 92 LYS 92 A HIS 93 n 93 HIS 93 A TYR 94 n 94 TYR 94 A ARG 95 n 95 ARG 95 A ASP 96 n 96 ASP 96 A LEU 97 n 97 LEU 97 A LEU 98 n 98 LEU 98 A ARG 99 n 99 ARG 99 A GLU 100 n 100 GLU 100 A GLY 101 n 101 GLY 101 A ASN 102 n 102 ASN 102 A PRO 103 n 103 PRO 103 A ASN 104 n 104 ASN 104 A LEU 105 n 105 LEU 105 A SER 106 n 106 SER 106 A PHE 107 n 107 PHE 107 A ILE 108 n 108 ILE 108 A TYR 109 n 109 TYR 109 A LEU 110 n 110 LEU 110 A LYS 111 n 111 LYS 111 A GLY 112 n 112 GLY 112 A ASP 113 n 113 ASP 113 A PHE 114 n 114 PHE 114 A ASP 115 n 115 ASP 115 A VAL 116 n 116 VAL 116 A ILE 117 n 117 ILE 117 A GLU 118 n 118 GLU 118 A SER 119 n 119 SER 119 A ARG 120 n 120 ARG 120 A LEU 121 n 121 LEU 121 A LYS 122 n 122 LYS 122 A ALA 123 n 123 ALA 123 A ARG 124 n 124 ARG 124 A LYS 125 n 125 LYS 125 A GLY 126 n 126 GLY 126 A HIS 127 n 127 HIS 127 A PHE 128 n 128 PHE 128 A PHE 129 n 129 PHE 129 A LYS 130 n 130 LYS 130 A THR 131 n 131 THR 131 A GLN 132 n 132 GLN 132 A MET 133 n 133 MET 133 A LEU 134 n 134 LEU 134 A VAL 135 n 135 VAL 135 A THR 136 n 136 THR 136 A GLN 137 n 137 GLN 137 A PHE 138 n 138 PHE 138 A GLU 139 n 139 GLU 139 A THR 140 n 140 THR 140 A LEU 141 n 141 LEU 141 A GLN 142 n 142 GLN 142 A GLU 143 n 143 GLU 143 A PRO 144 n 144 PRO 144 A GLY 145 n 145 GLY 145 A ALA 146 n 146 ALA 146 A ASP 147 n 147 ASP 147 A GLU 148 n 148 GLU 148 A THR 149 n 149 THR 149 A ASP 150 n 150 ASP 150 A VAL 151 n 151 VAL 151 A LEU 152 n 152 LEU 152 A VAL 153 n 153 VAL 153 A VAL 154 n 154 VAL 154 A ASP 155 n 155 ASP 155 A ILE 156 n 156 ILE 156 A ASP 157 n 157 ASP 157 A GLN 158 n 158 GLN 158 A PRO 159 n 159 PRO 159 A LEU 160 n 160 LEU 160 A GLU 161 n 161 GLU 161 A GLY 162 n 162 GLY 162 A VAL 163 n 163 VAL 163 A VAL 164 n 164 VAL 164 A ALA 165 n 165 ALA 165 A SER 166 n 166 SER 166 A THR 167 n 167 THR 167 A ILE 168 n 168 ILE 168 A GLU 169 n 169 GLU 169 A VAL 170 n 170 VAL 170 A ILE 171 n 171 ILE 171 A LYS 172 n 172 LYS 172 A LYS 173 n 173 LYS 173 A GLY 174 n 174 GLY 174 A n 175 175 A n 1 1 B n 2 2 B THR 3 n 3 THR 3 B THR 4 n 4 THR 4 B ASN 5 n 5 ASN 5 B HIS 6 n 6 HIS 6 B ASP 7 n 7 ASP 7 B HIS 8 n 8 HIS 8 B HIS 9 n 9 HIS 9 B ILE 10 n 10 ILE 10 B TYR 11 n 11 TYR 11 B VAL 12 n 12 VAL 12 B LEU 13 n 13 LEU 13 B MET 14 n 14 MET 14 B GLY 15 n 15 GLY 15 B VAL 16 n 16 VAL 16 B SER 17 n 17 SER 17 B GLY 18 n 18 GLY 18 B SER 19 n 19 SER 19 B GLY 20 n 20 GLY 20 B LYS 21 n 21 LYS 21 B SER 22 n 22 SER 22 B ALA 23 n 23 ALA 23 B VAL 24 n 24 VAL 24 B ALA 25 n 25 ALA 25 B SER 26 n 26 SER 26 B GLU 27 n 27 GLU 27 B VAL 28 n 28 VAL 28 B ALA 29 n 29 ALA 29 B HIS 30 n 30 HIS 30 B GLN 31 n 31 GLN 31 B LEU 32 n 32 LEU 32 B HIS 33 n 33 HIS 33 B ALA 34 n 34 ALA 34 B ALA 35 n 35 ALA 35 B PHE 36 n 36 PHE 36 B LEU 37 n 37 LEU 37 B ASP 38 n 38 ASP 38 B GLY 39 n 39 GLY 39 B ASP 40 n 40 ASP 40 B PHE 41 n 41 PHE 41 B LEU 42 n 42 LEU 42 B HIS 43 n 43 HIS 43 B PRO 44 n 44 PRO 44 B ARG 45 n 45 ARG 45 B ARG 46 n 46 ARG 46 B ASN 47 n 47 ASN 47 B ILE 48 n 48 ILE 48 B GLU 49 n 49 GLU 49 B LYS 50 n 50 LYS 50 B MET 51 n 51 MET 51 B ALA 52 n 52 ALA 52 B SER 53 n 53 SER 53 B GLY 54 n 54 GLY 54 B GLU 55 n 55 GLU 55 B PRO 56 n 56 PRO 56 B LEU 57 n 57 LEU 57 B ASN 58 n 58 ASN 58 B ASP 59 n 59 ASP 59 B ASP 60 n 60 ASP 60 B ASP 61 n 61 ASP 61 B ARG 62 n 62 ARG 62 B LYS 63 n 63 LYS 63 B PRO 64 n 64 PRO 64 B TRP 65 n 65 TRP 65 B LEU 66 n 66 LEU 66 B GLN 67 n 67 GLN 67 B ALA 68 n 68 ALA 68 B LEU 69 n 69 LEU 69 B ASN 70 n 70 ASN 70 B ASP 71 n 71 ASP 71 B ALA 72 n 72 ALA 72 B ALA 73 n 73 ALA 73 B PHE 74 n 74 PHE 74 B ALA 75 n 75 ALA 75 B MET 76 n 76 MET 76 B GLN 77 n 77 GLN 77 B ARG 78 n 78 ARG 78 B THR 79 n 79 THR 79 B ASN 80 n 80 ASN 80 B LYS 81 n 81 LYS 81 B VAL 82 n 82 VAL 82 B SER 83 n 83 SER 83 B LEU 84 n 84 LEU 84 B ILE 85 n 85 ILE 85 B VAL 86 n 86 VAL 86 B CYS 87 n 87 CYS 87 B SER 88 n 88 SER 88 B ALA 89 n 89 ALA 89 B LEU 90 n 90 LEU 90 B LYS 91 n 91 LYS 91 B LYS 92 n 92 LYS 92 B HIS 93 n 93 HIS 93 B TYR 94 n 94 TYR 94 B ARG 95 n 95 ARG 95 B ASP 96 n 96 ASP 96 B LEU 97 n 97 LEU 97 B LEU 98 n 98 LEU 98 B ARG 99 n 99 ARG 99 B GLU 100 n 100 GLU 100 B GLY 101 n 101 GLY 101 B ASN 102 n 102 ASN 102 B PRO 103 n 103 PRO 103 B ASN 104 n 104 ASN 104 B LEU 105 n 105 LEU 105 B SER 106 n 106 SER 106 B PHE 107 n 107 PHE 107 B ILE 108 n 108 ILE 108 B TYR 109 n 109 TYR 109 B LEU 110 n 110 LEU 110 B LYS 111 n 111 LYS 111 B GLY 112 n 112 GLY 112 B ASP 113 n 113 ASP 113 B PHE 114 n 114 PHE 114 B ASP 115 n 115 ASP 115 B VAL 116 n 116 VAL 116 B ILE 117 n 117 ILE 117 B GLU 118 n 118 GLU 118 B SER 119 n 119 SER 119 B ARG 120 n 120 ARG 120 B LEU 121 n 121 LEU 121 B LYS 122 n 122 LYS 122 B n 123 123 B n 124 124 B n 125 125 B n 126 126 B HIS 127 n 127 HIS 127 B PHE 128 n 128 PHE 128 B PHE 129 n 129 PHE 129 B LYS 130 n 130 LYS 130 B THR 131 n 131 THR 131 B GLN 132 n 132 GLN 132 B MET 133 n 133 MET 133 B LEU 134 n 134 LEU 134 B VAL 135 n 135 VAL 135 B THR 136 n 136 THR 136 B GLN 137 n 137 GLN 137 B PHE 138 n 138 PHE 138 B GLU 139 n 139 GLU 139 B THR 140 n 140 THR 140 B LEU 141 n 141 LEU 141 B GLN 142 n 142 GLN 142 B GLU 143 n 143 GLU 143 B PRO 144 n 144 PRO 144 B GLY 145 n 145 GLY 145 B ALA 146 n 146 ALA 146 B ASP 147 n 147 ASP 147 B GLU 148 n 148 GLU 148 B THR 149 n 149 THR 149 B ASP 150 n 150 ASP 150 B VAL 151 n 151 VAL 151 B LEU 152 n 152 LEU 152 B VAL 153 n 153 VAL 153 B VAL 154 n 154 VAL 154 B ASP 155 n 155 ASP 155 B ILE 156 n 156 ILE 156 B ASP 157 n 157 ASP 157 B GLN 158 n 158 GLN 158 B PRO 159 n 159 PRO 159 B LEU 160 n 160 LEU 160 B GLU 161 n 161 GLU 161 B GLY 162 n 162 GLY 162 B VAL 163 n 163 VAL 163 B VAL 164 n 164 VAL 164 B ALA 165 n 165 ALA 165 B SER 166 n 166 SER 166 B THR 167 n 167 THR 167 B ILE 168 n 168 ILE 168 B GLU 169 n 169 GLU 169 B VAL 170 n 170 VAL 170 B ILE 171 n 171 ILE 171 B LYS 172 n 172 LYS 172 B LYS 173 n 173 LYS 173 B GLY 174 n 174 GLY 174 B n 175 175 B author_defined_assembly 2 dimeric A SER 22 A OG SER 22 1_555 A MG 201 D MG MG 1_555 A 6PG 502 C O3P 6PG 1_555 153.4 A SER 22 A OG SER 22 1_555 A MG 201 D MG MG 1_555 A HOH 512 F O HOH 1_555 104.9 A 6PG 502 C O3P 6PG 1_555 A MG 201 D MG MG 1_555 A HOH 512 F O HOH 1_555 101.5 A SER 22 A OG SER 22 1_555 A MG 201 D MG MG 1_555 A HOH 513 F O HOH 1_555 101.5 A 6PG 502 C O3P 6PG 1_555 A MG 201 D MG MG 1_555 A HOH 513 F O HOH 1_555 71.2 A HOH 512 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 513 F O HOH 1_555 97.9 A SER 22 A OG SER 22 1_555 A MG 201 D MG MG 1_555 A HOH 514 F O HOH 1_555 120.6 A 6PG 502 C O3P 6PG 1_555 A MG 201 D MG MG 1_555 A HOH 514 F O HOH 1_555 71.7 A HOH 512 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 514 F O HOH 1_555 70.6 A HOH 513 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 514 F O HOH 1_555 137.8 A SER 22 A OG SER 22 1_555 A MG 201 D MG MG 1_555 A HOH 515 F O HOH 1_555 98.1 A 6PG 502 C O3P 6PG 1_555 A MG 201 D MG MG 1_555 A HOH 515 F O HOH 1_555 55.6 A HOH 512 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 515 F O HOH 1_555 152.1 A HOH 513 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 515 F O HOH 1_555 61.7 A HOH 514 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 515 F O HOH 1_555 110.6 A SER 22 A OG SER 22 1_555 A MG 201 D MG MG 1_555 A HOH 516 F O HOH 1_555 68.6 A 6PG 502 C O3P 6PG 1_555 A MG 201 D MG MG 1_555 A HOH 516 F O HOH 1_555 97.9 A HOH 512 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 516 F O HOH 1_555 126.9 A HOH 513 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 516 F O HOH 1_555 135.2 A HOH 514 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 516 F O HOH 1_555 69.6 A HOH 515 F O HOH 1_555 A MG 201 D MG MG 1_555 A HOH 516 F O HOH 1_555 76.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 35 A N ALA 35 A O LEU 84 A O LEU 84 A O SER 83 A O SER 83 A N TYR 11 A N TYR 11 A N VAL 12 A N VAL 12 A O SER 106 A O SER 106 A N TYR 109 A N TYR 109 A O LEU 152 A O LEU 152 B N ALA 35 B N ALA 35 B O LEU 84 B O LEU 84 B O SER 83 B O SER 83 B N TYR 11 B N TYR 11 B N VAL 12 B N VAL 12 B O ILE 108 B O ILE 108 B N TYR 109 B N TYR 109 B O VAL 154 B O VAL 154 1 B CG LYS 122 B CG LYS 122 0 Y 1 B CD LYS 122 B CD LYS 122 0 Y 1 B CE LYS 122 B CE LYS 122 0 Y 1 B NZ LYS 122 B NZ LYS 122 0 Y 1 B CG HIS 127 B CG HIS 127 0 Y 1 B ND1 HIS 127 B ND1 HIS 127 0 Y 1 B CD2 HIS 127 B CD2 HIS 127 0 Y 1 B CE1 HIS 127 B CE1 HIS 127 0 Y 1 B NE2 HIS 127 B NE2 HIS 127 0 Y 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A LYS 175 A LYS 175 1 Y 1 B MET 1 B MET 1 1 Y 1 B SER 2 B SER 2 1 Y 1 B ALA 123 B ALA 123 1 Y 1 B ARG 124 B ARG 124 1 Y 1 B LYS 125 B LYS 125 1 Y 1 B GLY 126 B GLY 126 1 Y 1 B LYS 175 B LYS 175 1 Y 1 B B O2P O 6PG HOH 503 511 1.76 1 B B O O HOH HOH 511 512 1.79 1 A A O2P O 6PG HOH 502 514 1.84 1 A A O O HOH HOH 511 519 1.90 1 A A O O HOH HOH 514 517 1.92 1 B B O O PHE HOH 129 508 2.00 1 B B O O HOH HOH 511 513 2.11 1 B B O2P O 6PG HOH 503 512 2.15 1 A A O2P O 6PG HOH 502 517 2.16 1 B B NZ OD2 LYS ASP 92 96 2.19 1 6.79 0.90 118.30 125.09 A A A CB CG OD2 ASP ASP ASP 59 59 59 N 1 7.26 0.90 118.30 125.56 A A A CB CG OD2 ASP ASP ASP 96 96 96 N 1 5.67 0.90 118.30 123.97 A A A CB CG OD2 ASP ASP ASP 157 157 157 N 1 5.76 0.90 118.30 124.06 B B B CB CG OD2 ASP ASP ASP 40 40 40 N 1 B B CB CG HIS HIS 127 127 -0.342 0.016 1.492 1.150 N 1 A VAL 16 -45.01 165.80 1 A ALA 29 -55.22 -74.67 1 A ASN 104 -97.89 31.53 1 A ILE 156 -68.12 3.97 1 A ASP 157 -90.07 42.25 1 B HIS 6 -58.81 4.50 1 B LEU 32 -141.11 12.90 1 B ALA 89 33.94 62.17 1 B GLU 100 -59.61 109.25 1 B PHE 128 161.30 153.54 1 B ASP 157 -69.91 52.75 1 B PRO 159 -59.59 -173.25 51.127 5.65 0.00 0.51 -0.31 0.00 -4.99 0.926 0.884 0.3090000 0.2538600 0.2566500 2.40 25.00 773 14889 14889 4.9 98.07 14.537 0.339 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.508 0.318 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.40 25.00 34 2742 35 0 2673 0.015 0.021 2748 1.937 1.962 3716 3.967 3.000 337 19.288 15.000 490 0.109 0.200 423 0.006 0.020 2061 0.294 0.300 1375 0.253 0.500 236 0.238 0.300 29 0.221 0.500 6 0.750 1.500 1690 1.385 2.000 2717 2.009 3.000 1058 3.195 4.500 999 0.5170000 0.3820000 2.409 41 878 20 51.3 2.4 48.80 1KO8 14896 14896 0 0 0.0940000 1 4.5 4.1 99.4 2.4 2.53 99.4 phasing AMoRE refinement REFMAC 5.0 data reduction MOSFLM data scaling CCP4 (SCALA) Crystal structure of gluconate kinase 1 N N 1 N N 2 N N 3 N N 2 N N 4 N N 4 N N The biological assembly is a dimer A GLY 20 A GLY 20 HELX_P A GLN 31 A GLN 31 1 1 12 A ASP 40 A ASP 40 HELX_P A HIS 43 A HIS 43 5 2 4 A PRO 44 A PRO 44 HELX_P A ALA 52 A ALA 52 1 3 9 A ASN 58 A ASN 58 HELX_P A ASN 80 A ASN 80 1 4 23 A LYS 91 A LYS 91 HELX_P A GLU 100 A GLU 100 1 5 10 A ASP 113 A ASP 113 HELX_P A LYS 122 A LYS 122 1 6 10 A LYS 130 A LYS 130 HELX_P A LEU 141 A LEU 141 1 7 12 A PRO 159 A PRO 159 HELX_P A GLY 174 A GLY 174 1 8 16 B GLY 20 B GLY 20 HELX_P B GLN 31 B GLN 31 1 9 12 B ASP 40 B ASP 40 HELX_P B HIS 43 B HIS 43 5 10 4 B PRO 44 B PRO 44 HELX_P B SER 53 B SER 53 1 11 10 B ASN 58 B ASN 58 HELX_P B ASN 80 B ASN 80 1 12 23 B LYS 91 B LYS 91 HELX_P B GLU 100 B GLU 100 1 13 10 B ASP 113 B ASP 113 HELX_P B LYS 122 B LYS 122 1 14 10 B LYS 130 B LYS 130 HELX_P B LEU 141 B LEU 141 1 15 12 B PRO 159 B PRO 159 HELX_P B GLY 174 B GLY 174 1 16 16 metalc 2.248 A SER 22 A OG SER 22 1_555 A MG 201 D MG MG 1_555 metalc 2.041 A MG 201 D MG MG 1_555 A 6PG 502 C O3P 6PG 1_555 metalc 2.003 A MG 201 D MG MG 1_555 A HOH 512 F O HOH 1_555 metalc 2.395 A MG 201 D MG MG 1_555 A HOH 513 F O HOH 1_555 metalc 3.111 A MG 201 D MG MG 1_555 A HOH 514 F O HOH 1_555 metalc 2.962 A MG 201 D MG MG 1_555 A HOH 515 F O HOH 1_555 metalc 1.670 A MG 201 D MG MG 1_555 A HOH 516 F O HOH 1_555 TRANSFERASE alfa/beta, TRANSFERASE GNTK_ECOLI UNP 1 P46859 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN KVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL EGVVASTIEVIKKGK 0 174 1KO8 1 175 P46859 A 1 1 175 0 174 1KO8 1 175 P46859 B 1 1 175 5 5 parallel parallel parallel parallel parallel parallel parallel parallel A ALA 35 A ALA 35 A ASP 38 A ASP 38 A VAL 82 A VAL 82 A VAL 86 A VAL 86 A HIS 9 A HIS 9 A MET 14 A MET 14 A LEU 105 A LEU 105 A LYS 111 A LYS 111 A VAL 151 A VAL 151 A ASP 155 A ASP 155 B ALA 35 B ALA 35 B ASP 38 B ASP 38 B VAL 82 B VAL 82 B VAL 86 B VAL 86 B HIS 9 B HIS 9 B MET 14 B MET 14 B LEU 105 B LEU 105 B LYS 111 B LYS 111 B VAL 151 B VAL 151 B ASP 155 B ASP 155 BINDING SITE FOR RESIDUE 6PG A 502 A 6PG 502 Software 11 BINDING SITE FOR RESIDUE 6PG B 503 B 6PG 503 Software 7 BINDING SITE FOR RESIDUE MG A 201 A MG 201 Software 6 A SER 17 A SER 17 11 1_555 A GLY 18 A GLY 18 11 1_555 A ASP 40 A ASP 40 11 1_555 A LEU 121 A LEU 121 11 1_555 A HIS 127 A HIS 127 11 1_555 A MG 201 D MG 11 1_555 A HOH 513 F HOH 11 1_555 A HOH 514 F HOH 11 1_555 A HOH 515 F HOH 11 1_555 A HOH 516 F HOH 11 1_555 A HOH 517 F HOH 11 1_555 B SER 17 B SER 17 7 1_555 B GLY 18 B GLY 18 7 1_555 B LYS 21 B LYS 21 7 1_555 B HOH 510 G HOH 7 1_555 B HOH 511 G HOH 7 1_555 B HOH 512 G HOH 7 1_555 B HOH 513 G HOH 7 1_555 A SER 22 A SER 22 6 1_555 A 6PG 502 C 6PG 6 1_555 A HOH 512 F HOH 6 1_555 A HOH 513 F HOH 6 1_555 A HOH 515 F HOH 6 1_555 A HOH 516 F HOH 6 1_555 4 P 1 21 1