1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Fukushima, K.
Kikuchi, J.
Koshiba, S.
Kigawa, T.
Kuroda, Y.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
321
317
327
10.1016/S0022-2836(02)00588-0
12144788
Solution structure of the DFF-C domain of DFF45/ICAD. A structural basis for the regulation of apoptotic DNA fragmentation.
2002
10.2210/pdb1koy/pdb
pdb_00001koy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
7009.962
DNA fragmentation factor alpha subunit
C-TERMINAL DOMAIN
1
man
polymer
DFF-45, DFF-C
no
no
SHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT
SHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT
A
trt001000163.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2002-09-04
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
1IYR is NMR Structure ensemble of DFF-C Domain
5408 is CHEMICAL SHIFT data
Y
RCSB
Y
PDBJ
2001-12-25
REL
REL
structures with the lowest energy
10
1
6.50
298.00
K
simulated annealing
U-13C, 15N
structure solution
CNS
1.0
refinement
CNS
1.0
600
Bruker
DRX
SER
239
n
1
SER
239
A
HIS
240
n
2
HIS
240
A
ILE
241
n
3
ILE
241
A
LEU
242
n
4
LEU
242
A
THR
243
n
5
THR
243
A
ALA
244
n
6
ALA
244
A
LEU
245
n
7
LEU
245
A
ARG
246
n
8
ARG
246
A
GLU
247
n
9
GLU
247
A
LYS
248
n
10
LYS
248
A
GLN
249
n
11
GLN
249
A
ALA
250
n
12
ALA
250
A
PRO
251
n
13
PRO
251
A
GLU
252
n
14
GLU
252
A
LEU
253
n
15
LEU
253
A
SER
254
n
16
SER
254
A
LEU
255
n
17
LEU
255
A
SER
256
n
18
SER
256
A
SER
257
n
19
SER
257
A
GLN
258
n
20
GLN
258
A
ASP
259
n
21
ASP
259
A
LEU
260
n
22
LEU
260
A
GLU
261
n
23
GLU
261
A
LEU
262
n
24
LEU
262
A
VAL
263
n
25
VAL
263
A
THR
264
n
26
THR
264
A
LYS
265
n
27
LYS
265
A
GLU
266
n
28
GLU
266
A
ASP
267
n
29
ASP
267
A
PRO
268
n
30
PRO
268
A
LYS
269
n
31
LYS
269
A
ALA
270
n
32
ALA
270
A
LEU
271
n
33
LEU
271
A
ALA
272
n
34
ALA
272
A
VAL
273
n
35
VAL
273
A
ALA
274
n
36
ALA
274
A
LEU
275
n
37
LEU
275
A
ASN
276
n
38
ASN
276
A
TRP
277
n
39
TRP
277
A
ASP
278
n
40
ASP
278
A
ILE
279
n
41
ILE
279
A
LYS
280
n
42
LYS
280
A
LYS
281
n
43
LYS
281
A
THR
282
n
44
THR
282
A
GLU
283
n
45
GLU
283
A
THR
284
n
46
THR
284
A
VAL
285
n
47
VAL
285
A
GLN
286
n
48
GLN
286
A
GLU
287
n
49
GLU
287
A
ALA
288
n
50
ALA
288
A
CYS
289
n
51
CYS
289
A
GLU
290
n
52
GLU
290
A
ARG
291
n
53
ARG
291
A
GLU
292
n
54
GLU
292
A
LEU
293
n
55
LEU
293
A
ALA
294
n
56
ALA
294
A
LEU
295
n
57
LEU
295
A
ARG
296
n
58
ARG
296
A
LEU
297
n
59
LEU
297
A
GLN
298
n
60
GLN
298
A
GLN
299
n
61
GLN
299
A
THR
300
n
62
THR
300
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
ASP
THR
278
282
1.57
1
A
GLU
247
-122.82
-79.01
1
A
PRO
251
-89.04
33.07
1
A
GLU
252
-111.25
-70.45
1
A
SER
256
-105.31
-159.94
1
A
ASN
276
-31.55
88.04
NMR structure of DFF-C domain
1
N
N
A
SER
239
A
SER
1
HELX_P
A
ARG
246
A
ARG
8
1
1
8
A
SER
256
A
SER
18
HELX_P
A
LYS
265
A
LYS
27
1
2
10
A
ASP
267
A
ASP
29
HELX_P
A
LEU
275
A
LEU
37
1
3
9
A
ASP
278
A
ASP
40
HELX_P
A
GLN
299
A
GLN
61
1
4
22
APOPTOSIS
DFF, Apoptosis, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics
DFFA_HUMAN
UNP
1
239
O00273
SHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT
239
300
1KOY
239
300
O00273
A
1
1
62