0.013194
0.000000
0.000000
0.000000
0.011298
0.000000
0.000000
0.000000
0.012814
0.00000
0.00000
0.00000
Chandra, V.
Jasti, J.
Kaur, P.
Betzel, C.
Srinivasan, A.
Singh, T.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
75.790
88.510
78.040
C2 H4 O2
60.052
ACETIC ACID
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C29 H50 O2
430.706
VITAMIN E
2,5,7,8-TETRAMETHYL-2-(4,8,12-TRIMETHYLTRIDECYL)-6-CHROMANOL
non-polymer
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
H
N
9
N
N
N
10
S
C
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
O
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
N
N
23
S
C
N
24
N
C
N
25
N
O
N
26
N
C
N
27
N
C
N
28
N
C
N
29
N
N
N
30
N
C
N
31
N
N
N
32
N
N
N
33
N
O
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
C
N
55
N
O
N
56
N
N
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
C
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
R
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
S
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
N
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
Y
150
N
C
Y
151
N
N
Y
152
N
C
Y
153
N
C
Y
154
N
N
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
S
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
S
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
O
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
R
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
N
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
N
367
N
O
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
C
N
407
N
O
N
408
S
C
N
409
N
C
N
410
N
C
N
411
N
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
C
N
416
N
C
N
417
N
C
N
418
S
C
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
C
N
423
S
C
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
Y
147
N
sing
Y
148
N
doub
Y
149
N
doub
N
150
N
sing
Y
151
N
sing
N
152
N
sing
Y
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
doub
Y
256
N
sing
Y
257
N
sing
N
258
N
sing
Y
259
N
doub
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
Y
329
N
sing
Y
330
N
sing
N
331
N
sing
Y
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
Y
352
N
doub
Y
353
N
sing
Y
354
N
sing
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
N
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
320
215
222
10.1016/S0022-2836(02)00473-4
12079380
First Structural Evidence of a Specific Inhibition of Phospholipase A2 by alpha-Tocopherol (Vitamin E) and its
Implications in Inflammation: Crystal Structure of the Complex Formed Between Phospholipase A2 and
alpha-Tocopherol at 1.8 A Resolution
2002
To be Published
0353
First Structural Evidence of Antiinflammatory Action of Vitamin E (2,5,7,8-tetramethyl-2-(4',8',12'-trimethyltridecyl)-6-chromanol) Through its Binding to Phospholipase A2 Specifically: Crystal Structure of a Complex Formed between Phospholipase A2 and Vitamin E at 1.80 Resolution
To be Published
0353
Crystal Structure of a Complex Formed between Phospholipase A2 from Daboia russelli pulchella and a Designed Pentapeptide Phe-Leu-Ser-Tyr-Lys at 1.8 Resolution
To be Published
0353
First Structural Evidence of the Inhibition of Phospholipase A2 by Aristolochic Acid: Crystal Structure of a Complex Formed between Phospholipase A2 and Aristolochic Acid
To be Published
0353
Design of Specific Inhibitors of Phospholipase A2: Crystal Structure of a Complex Formed between Phospholipase A2 from Daboia russelli pulchella and a Designed Pentapeptide Leu-Ala-Ile-Tyr-Ser at 2.0 Resolution
DK
ACTA CRYSTALLOGR.,SECT.D
ABCRE6
0766
0907-4449
57
1793
1798
10.1107/S0907444901014524
Regulation of catalytic function by molecular association: structure of phospholipase A2 from Daboia russelli pulchella (DPLA2) at 1.9 A resolution.
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
296
1117
1126
10.1006/jmbi.2000.3537
Three-dimensional structure of a presynaptic neurotoxic phospholipase A2 from Daboia russelli
pulchella at 2.4 A resolution.
2000
10.2210/pdb1kpm/pdb
pdb_00001kpm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
180.0
1
MIRRORS
IMAGE PLATE
1999-06-20
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
X11
EMBL/DESY, HAMBURG
0.98
0.98
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
13629.767
Phospholipase A2
3.1.1.4
2
nat
polymer
430.706
VITAMIN E
1
syn
non-polymer
60.052
ACETIC ACID
4
syn
non-polymer
18.015
water
306
nat
water
no
no
SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTS
CENRICECDKAAAICFRQNLNTYSKKYMLYPDFLCKGELKC
SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTS
CENRICECDKAAAICFRQNLNTYSKKYMLYPDFLCKGELKC
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Daboia
sample
97228
Daboia russellii pulchella
venom
Daboia russellii
pulchella
1
2.34
47.4
VAPOR DIFFUSION, HANGING DROP
6.50
20mM Sodium cacodylate, 1.4M Ammonium sulfate, 4mM Calcium chloride, 3% dioxane, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-07-10
1
1
2008-04-27
1
2
2011-07-13
1
3
2011-11-16
1
4
2017-10-11
1
5
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
2002-07-10
SPRSDE
1fe7 is the Structure of DPLA2 complexed with Vitamin E
1fb2 is the Structure of DPLA2 at 1.95
1cl5 is the Structure of DPLA2 at 2.45
1jq8 is the Structure of DPLA2 complexed with pentapeptide LAIYS
1jq9 is the Structure of DPLA2 complexed with pentapeptide FLSYK
1fv0 is the Structure of DPLA2 complexed with aristolochic acid
RCSB
Y
RCSB
2002-01-01
REL
VIT
VITAMIN E
ACY
ACETIC ACID
HOH
water
1CL5
PDB
experimental model
VIT
401
2
VIT
VIT
401
A
ACY
504
3
ACY
ACY
504
A
ACY
501
3
ACY
ACY
501
B
ACY
502
3
ACY
ACY
502
B
ACY
503
3
ACY
ACY
503
B
HOH
1
4
HOH
HOH
505
A
HOH
5
4
HOH
HOH
506
A
HOH
6
4
HOH
HOH
507
A
HOH
7
4
HOH
HOH
508
A
HOH
10
4
HOH
HOH
509
A
HOH
12
4
HOH
HOH
510
A
HOH
14
4
HOH
HOH
511
A
HOH
19
4
HOH
HOH
512
A
HOH
20
4
HOH
HOH
513
A
HOH
28
4
HOH
HOH
514
A
HOH
31
4
HOH
HOH
515
A
HOH
34
4
HOH
HOH
516
A
HOH
36
4
HOH
HOH
517
A
HOH
39
4
HOH
HOH
518
A
HOH
40
4
HOH
HOH
519
A
HOH
42
4
HOH
HOH
520
A
HOH
45
4
HOH
HOH
521
A
HOH
46
4
HOH
HOH
522
A
HOH
51
4
HOH
HOH
523
A
HOH
56
4
HOH
HOH
524
A
HOH
57
4
HOH
HOH
525
A
HOH
59
4
HOH
HOH
526
A
HOH
61
4
HOH
HOH
527
A
HOH
63
4
HOH
HOH
528
A
HOH
67
4
HOH
HOH
529
A
HOH
70
4
HOH
HOH
530
A
HOH
73
4
HOH
HOH
531
A
HOH
74
4
HOH
HOH
532
A
HOH
75
4
HOH
HOH
533
A
HOH
76
4
HOH
HOH
534
A
HOH
77
4
HOH
HOH
535
A
HOH
79
4
HOH
HOH
536
A
HOH
80
4
HOH
HOH
537
A
HOH
84
4
HOH
HOH
538
A
HOH
85
4
HOH
HOH
539
A
HOH
87
4
HOH
HOH
540
A
HOH
88
4
HOH
HOH
541
A
HOH
89
4
HOH
HOH
542
A
HOH
91
4
HOH
HOH
543
A
HOH
96
4
HOH
HOH
544
A
HOH
97
4
HOH
HOH
545
A
HOH
101
4
HOH
HOH
546
A
HOH
106
4
HOH
HOH
547
A
HOH
108
4
HOH
HOH
548
A
HOH
109
4
HOH
HOH
549
A
HOH
110
4
HOH
HOH
550
A
HOH
113
4
HOH
HOH
551
A
HOH
119
4
HOH
HOH
552
A
HOH
120
4
HOH
HOH
553
A
HOH
121
4
HOH
HOH
554
A
HOH
125
4
HOH
HOH
555
A
HOH
126
4
HOH
HOH
556
A
HOH
127
4
HOH
HOH
557
A
HOH
128
4
HOH
HOH
558
A
HOH
129
4
HOH
HOH
559
A
HOH
130
4
HOH
HOH
560
A
HOH
131
4
HOH
HOH
561
A
HOH
132
4
HOH
HOH
562
A
HOH
133
4
HOH
HOH
563
A
HOH
134
4
HOH
HOH
564
A
HOH
135
4
HOH
HOH
565
A
HOH
136
4
HOH
HOH
566
A
HOH
137
4
HOH
HOH
567
A
HOH
138
4
HOH
HOH
568
A
HOH
139
4
HOH
HOH
569
A
HOH
140
4
HOH
HOH
570
A
HOH
141
4
HOH
HOH
571
A
HOH
142
4
HOH
HOH
572
A
HOH
143
4
HOH
HOH
573
A
HOH
144
4
HOH
HOH
574
A
HOH
145
4
HOH
HOH
575
A
HOH
146
4
HOH
HOH
576
A
HOH
147
4
HOH
HOH
577
A
HOH
148
4
HOH
HOH
578
A
HOH
149
4
HOH
HOH
579
A
HOH
150
4
HOH
HOH
580
A
HOH
151
4
HOH
HOH
581
A
HOH
152
4
HOH
HOH
582
A
HOH
153
4
HOH
HOH
583
A
HOH
154
4
HOH
HOH
584
A
HOH
155
4
HOH
HOH
585
A
HOH
156
4
HOH
HOH
586
A
HOH
157
4
HOH
HOH
587
A
HOH
158
4
HOH
HOH
588
A
HOH
159
4
HOH
HOH
589
A
HOH
160
4
HOH
HOH
590
A
HOH
161
4
HOH
HOH
591
A
HOH
162
4
HOH
HOH
592
A
HOH
163
4
HOH
HOH
593
A
HOH
165
4
HOH
HOH
594
A
HOH
166
4
HOH
HOH
595
A
HOH
167
4
HOH
HOH
596
A
HOH
168
4
HOH
HOH
597
A
HOH
169
4
HOH
HOH
598
A
HOH
170
4
HOH
HOH
599
A
HOH
171
4
HOH
HOH
600
A
HOH
181
4
HOH
HOH
601
A
HOH
211
4
HOH
HOH
602
A
HOH
212
4
HOH
HOH
603
A
HOH
215
4
HOH
HOH
604
A
HOH
219
4
HOH
HOH
605
A
HOH
221
4
HOH
HOH
606
A
HOH
223
4
HOH
HOH
607
A
HOH
225
4
HOH
HOH
608
A
HOH
227
4
HOH
HOH
609
A
HOH
228
4
HOH
HOH
610
A
HOH
229
4
HOH
HOH
611
A
HOH
231
4
HOH
HOH
612
A
HOH
233
4
HOH
HOH
613
A
HOH
235
4
HOH
HOH
614
A
HOH
237
4
HOH
HOH
615
A
HOH
241
4
HOH
HOH
616
A
HOH
242
4
HOH
HOH
617
A
HOH
243
4
HOH
HOH
618
A
HOH
245
4
HOH
HOH
619
A
HOH
246
4
HOH
HOH
620
A
HOH
248
4
HOH
HOH
621
A
HOH
250
4
HOH
HOH
622
A
HOH
251
4
HOH
HOH
623
A
HOH
253
4
HOH
HOH
624
A
HOH
254
4
HOH
HOH
625
A
HOH
255
4
HOH
HOH
626
A
HOH
257
4
HOH
HOH
627
A
HOH
258
4
HOH
HOH
628
A
HOH
264
4
HOH
HOH
629
A
HOH
266
4
HOH
HOH
630
A
HOH
268
4
HOH
HOH
631
A
HOH
269
4
HOH
HOH
632
A
HOH
275
4
HOH
HOH
633
A
HOH
276
4
HOH
HOH
634
A
HOH
277
4
HOH
HOH
635
A
HOH
279
4
HOH
HOH
636
A
HOH
281
4
HOH
HOH
637
A
HOH
282
4
HOH
HOH
638
A
HOH
283
4
HOH
HOH
639
A
HOH
285
4
HOH
HOH
640
A
HOH
287
4
HOH
HOH
641
A
HOH
292
4
HOH
HOH
642
A
HOH
293
4
HOH
HOH
643
A
HOH
295
4
HOH
HOH
644
A
HOH
296
4
HOH
HOH
645
A
HOH
297
4
HOH
HOH
646
A
HOH
300
4
HOH
HOH
647
A
HOH
2
4
HOH
HOH
504
B
HOH
3
4
HOH
HOH
505
B
HOH
4
4
HOH
HOH
506
B
HOH
8
4
HOH
HOH
507
B
HOH
9
4
HOH
HOH
508
B
HOH
11
4
HOH
HOH
509
B
HOH
13
4
HOH
HOH
510
B
HOH
15
4
HOH
HOH
511
B
HOH
16
4
HOH
HOH
512
B
HOH
17
4
HOH
HOH
513
B
HOH
18
4
HOH
HOH
514
B
HOH
21
4
HOH
HOH
515
B
HOH
22
4
HOH
HOH
516
B
HOH
23
4
HOH
HOH
517
B
HOH
24
4
HOH
HOH
518
B
HOH
25
4
HOH
HOH
519
B
HOH
26
4
HOH
HOH
520
B
HOH
27
4
HOH
HOH
521
B
HOH
29
4
HOH
HOH
522
B
HOH
30
4
HOH
HOH
523
B
HOH
32
4
HOH
HOH
524
B
HOH
33
4
HOH
HOH
525
B
HOH
35
4
HOH
HOH
526
B
HOH
37
4
HOH
HOH
527
B
HOH
38
4
HOH
HOH
528
B
HOH
41
4
HOH
HOH
529
B
HOH
43
4
HOH
HOH
530
B
HOH
44
4
HOH
HOH
531
B
HOH
47
4
HOH
HOH
532
B
HOH
48
4
HOH
HOH
533
B
HOH
49
4
HOH
HOH
534
B
HOH
50
4
HOH
HOH
535
B
HOH
52
4
HOH
HOH
536
B
HOH
53
4
HOH
HOH
537
B
HOH
54
4
HOH
HOH
538
B
HOH
55
4
HOH
HOH
539
B
HOH
58
4
HOH
HOH
540
B
HOH
60
4
HOH
HOH
541
B
HOH
62
4
HOH
HOH
542
B
HOH
64
4
HOH
HOH
543
B
HOH
65
4
HOH
HOH
544
B
HOH
66
4
HOH
HOH
545
B
HOH
68
4
HOH
HOH
546
B
HOH
69
4
HOH
HOH
547
B
HOH
71
4
HOH
HOH
548
B
HOH
72
4
HOH
HOH
549
B
HOH
78
4
HOH
HOH
550
B
HOH
81
4
HOH
HOH
551
B
HOH
82
4
HOH
HOH
552
B
HOH
83
4
HOH
HOH
553
B
HOH
86
4
HOH
HOH
554
B
HOH
90
4
HOH
HOH
555
B
HOH
92
4
HOH
HOH
556
B
HOH
93
4
HOH
HOH
557
B
HOH
94
4
HOH
HOH
558
B
HOH
95
4
HOH
HOH
559
B
HOH
98
4
HOH
HOH
560
B
HOH
99
4
HOH
HOH
561
B
HOH
100
4
HOH
HOH
562
B
HOH
102
4
HOH
HOH
563
B
HOH
103
4
HOH
HOH
564
B
HOH
104
4
HOH
HOH
565
B
HOH
105
4
HOH
HOH
566
B
HOH
107
4
HOH
HOH
567
B
HOH
111
4
HOH
HOH
568
B
HOH
112
4
HOH
HOH
569
B
HOH
114
4
HOH
HOH
570
B
HOH
115
4
HOH
HOH
571
B
HOH
116
4
HOH
HOH
572
B
HOH
117
4
HOH
HOH
573
B
HOH
118
4
HOH
HOH
574
B
HOH
122
4
HOH
HOH
575
B
HOH
123
4
HOH
HOH
576
B
HOH
124
4
HOH
HOH
577
B
HOH
164
4
HOH
HOH
578
B
HOH
172
4
HOH
HOH
579
B
HOH
173
4
HOH
HOH
580
B
HOH
174
4
HOH
HOH
581
B
HOH
175
4
HOH
HOH
582
B
HOH
176
4
HOH
HOH
583
B
HOH
177
4
HOH
HOH
584
B
HOH
178
4
HOH
HOH
585
B
HOH
179
4
HOH
HOH
586
B
HOH
180
4
HOH
HOH
587
B
HOH
182
4
HOH
HOH
588
B
HOH
183
4
HOH
HOH
589
B
HOH
184
4
HOH
HOH
590
B
HOH
185
4
HOH
HOH
591
B
HOH
186
4
HOH
HOH
592
B
HOH
187
4
HOH
HOH
593
B
HOH
188
4
HOH
HOH
594
B
HOH
189
4
HOH
HOH
595
B
HOH
190
4
HOH
HOH
596
B
HOH
191
4
HOH
HOH
597
B
HOH
192
4
HOH
HOH
598
B
HOH
193
4
HOH
HOH
599
B
HOH
194
4
HOH
HOH
600
B
HOH
195
4
HOH
HOH
601
B
HOH
196
4
HOH
HOH
602
B
HOH
197
4
HOH
HOH
603
B
HOH
198
4
HOH
HOH
604
B
HOH
199
4
HOH
HOH
605
B
HOH
200
4
HOH
HOH
606
B
HOH
201
4
HOH
HOH
607
B
HOH
202
4
HOH
HOH
608
B
HOH
203
4
HOH
HOH
609
B
HOH
204
4
HOH
HOH
610
B
HOH
205
4
HOH
HOH
611
B
HOH
206
4
HOH
HOH
612
B
HOH
207
4
HOH
HOH
613
B
HOH
208
4
HOH
HOH
614
B
HOH
209
4
HOH
HOH
615
B
HOH
210
4
HOH
HOH
616
B
HOH
213
4
HOH
HOH
617
B
HOH
214
4
HOH
HOH
618
B
HOH
216
4
HOH
HOH
619
B
HOH
217
4
HOH
HOH
620
B
HOH
218
4
HOH
HOH
621
B
HOH
220
4
HOH
HOH
622
B
HOH
222
4
HOH
HOH
623
B
HOH
224
4
HOH
HOH
624
B
HOH
226
4
HOH
HOH
625
B
HOH
230
4
HOH
HOH
626
B
HOH
232
4
HOH
HOH
627
B
HOH
234
4
HOH
HOH
628
B
HOH
236
4
HOH
HOH
629
B
HOH
238
4
HOH
HOH
630
B
HOH
239
4
HOH
HOH
631
B
HOH
240
4
HOH
HOH
632
B
HOH
244
4
HOH
HOH
633
B
HOH
247
4
HOH
HOH
634
B
HOH
249
4
HOH
HOH
635
B
HOH
252
4
HOH
HOH
636
B
HOH
256
4
HOH
HOH
637
B
HOH
259
4
HOH
HOH
638
B
HOH
260
4
HOH
HOH
639
B
HOH
261
4
HOH
HOH
640
B
HOH
262
4
HOH
HOH
641
B
HOH
263
4
HOH
HOH
642
B
HOH
265
4
HOH
HOH
643
B
HOH
267
4
HOH
HOH
644
B
HOH
270
4
HOH
HOH
645
B
HOH
271
4
HOH
HOH
646
B
HOH
272
4
HOH
HOH
647
B
HOH
273
4
HOH
HOH
648
B
HOH
274
4
HOH
HOH
649
B
HOH
278
4
HOH
HOH
650
B
HOH
280
4
HOH
HOH
651
B
HOH
284
4
HOH
HOH
652
B
HOH
286
4
HOH
HOH
653
B
HOH
288
4
HOH
HOH
654
B
HOH
289
4
HOH
HOH
655
B
HOH
290
4
HOH
HOH
656
B
HOH
291
4
HOH
HOH
657
B
HOH
294
4
HOH
HOH
658
B
HOH
298
4
HOH
HOH
659
B
HOH
299
4
HOH
HOH
660
B
HOH
301
4
HOH
HOH
661
B
HOH
302
4
HOH
HOH
662
B
HOH
303
4
HOH
HOH
663
B
HOH
304
4
HOH
HOH
664
B
HOH
305
4
HOH
HOH
665
B
HOH
306
4
HOH
HOH
666
B
SER
1
n
1
SER
1
A
LEU
2
n
2
LEU
2
A
LEU
3
n
3
LEU
3
A
GLU
4
n
4
GLU
4
A
PHE
5
n
5
PHE
5
A
GLY
6
n
6
GLY
6
A
LYS
7
n
7
LYS
7
A
MET
8
n
8
MET
8
A
ILE
9
n
9
ILE
9
A
LEU
10
n
10
LEU
10
A
GLU
11
n
11
GLU
11
A
GLU
12
n
12
GLU
12
A
THR
13
n
13
THR
13
A
GLY
14
n
14
GLY
14
A
LYS
16
n
15
LYS
16
A
LEU
17
n
16
LEU
17
A
ALA
18
n
17
ALA
18
A
ILE
19
n
18
ILE
19
A
PRO
20
n
19
PRO
20
A
SER
21
n
20
SER
21
A
TYR
22
n
21
TYR
22
A
SER
23
n
22
SER
23
A
SER
24
n
23
SER
24
A
TYR
25
n
24
TYR
25
A
GLY
26
n
25
GLY
26
A
CYS
27
n
26
CYS
27
A
TYR
28
n
27
TYR
28
A
CYS
29
n
28
CYS
29
A
GLY
30
n
29
GLY
30
A
TRP
31
n
30
TRP
31
A
GLY
32
n
31
GLY
32
A
GLY
33
n
32
GLY
33
A
LYS
34
n
33
LYS
34
A
GLY
35
n
34
GLY
35
A
THR
36
n
35
THR
36
A
PRO
37
n
36
PRO
37
A
LYS
38
n
37
LYS
38
A
ASP
39
n
38
ASP
39
A
ALA
40
n
39
ALA
40
A
THR
41
n
40
THR
41
A
ASP
42
n
41
ASP
42
A
ARG
43
n
42
ARG
43
A
CYS
44
n
43
CYS
44
A
CYS
45
n
44
CYS
45
A
PHE
46
n
45
PHE
46
A
VAL
47
n
46
VAL
47
A
HIS
48
n
47
HIS
48
A
ASP
49
n
48
ASP
49
A
CYS
50
n
49
CYS
50
A
CYS
51
n
50
CYS
51
A
TYR
52
n
51
TYR
52
A
GLY
53
n
52
GLY
53
A
ASN
54
n
53
ASN
54
A
LEU
55
n
54
LEU
55
A
PRO
56
n
55
PRO
56
A
ASP
59
n
56
ASP
59
A
CYS
61
n
57
CYS
61
A
ASN
67
n
58
ASN
67
A
PRO
68
n
59
PRO
68
A
LYS
69
n
60
LYS
69
A
SER
70
n
61
SER
70
A
ASP
71
n
62
ASP
71
A
ARG
72
n
63
ARG
72
A
TYR
73
n
64
TYR
73
A
LYS
74
n
65
LYS
74
A
TYR
75
n
66
TYR
75
A
LYS
76
n
67
LYS
76
A
ARG
77
n
68
ARG
77
A
VAL
78
n
69
VAL
78
A
ASN
79
n
70
ASN
79
A
GLY
80
n
71
GLY
80
A
ALA
81
n
72
ALA
81
A
ILE
82
n
73
ILE
82
A
VAL
83
n
74
VAL
83
A
CYS
84
n
75
CYS
84
A
GLU
85
n
76
GLU
85
A
LYS
86
n
77
LYS
86
A
GLY
88
n
78
GLY
88
A
THR
89
n
79
THR
89
A
SER
90
n
80
SER
90
A
CYS
91
n
81
CYS
91
A
GLU
92
n
82
GLU
92
A
ASN
93
n
83
ASN
93
A
ARG
94
n
84
ARG
94
A
ILE
95
n
85
ILE
95
A
CYS
96
n
86
CYS
96
A
GLU
97
n
87
GLU
97
A
CYS
98
n
88
CYS
98
A
ASP
99
n
89
ASP
99
A
LYS
100
n
90
LYS
100
A
ALA
101
n
91
ALA
101
A
ALA
102
n
92
ALA
102
A
ALA
103
n
93
ALA
103
A
ILE
104
n
94
ILE
104
A
CYS
105
n
95
CYS
105
A
PHE
106
n
96
PHE
106
A
ARG
107
n
97
ARG
107
A
GLN
108
n
98
GLN
108
A
ASN
109
n
99
ASN
109
A
LEU
110
n
100
LEU
110
A
ASN
111
n
101
ASN
111
A
THR
112
n
102
THR
112
A
TYR
113
n
103
TYR
113
A
SER
114
n
104
SER
114
A
LYS
115
n
105
LYS
115
A
LYS
116
n
106
LYS
116
A
TYR
117
n
107
TYR
117
A
MET
118
n
108
MET
118
A
LEU
119
n
109
LEU
119
A
TYR
120
n
110
TYR
120
A
PRO
121
n
111
PRO
121
A
ASP
122
n
112
ASP
122
A
PHE
124
n
113
PHE
124
A
LEU
125
n
114
LEU
125
A
CYS
126
n
115
CYS
126
A
LYS
127
n
116
LYS
127
A
GLY
128
n
117
GLY
128
A
GLU
129
n
118
GLU
129
A
LEU
130
n
119
LEU
130
A
LYS
131
n
120
LYS
131
A
CYS
133
n
121
CYS
133
A
SER
1
n
1
SER
1
B
LEU
2
n
2
LEU
2
B
LEU
3
n
3
LEU
3
B
GLU
4
n
4
GLU
4
B
PHE
5
n
5
PHE
5
B
GLY
6
n
6
GLY
6
B
LYS
7
n
7
LYS
7
B
MET
8
n
8
MET
8
B
ILE
9
n
9
ILE
9
B
LEU
10
n
10
LEU
10
B
GLU
11
n
11
GLU
11
B
GLU
12
n
12
GLU
12
B
THR
13
n
13
THR
13
B
GLY
14
n
14
GLY
14
B
LYS
16
n
15
LYS
16
B
LEU
17
n
16
LEU
17
B
ALA
18
n
17
ALA
18
B
ILE
19
n
18
ILE
19
B
PRO
20
n
19
PRO
20
B
SER
21
n
20
SER
21
B
TYR
22
n
21
TYR
22
B
SER
23
n
22
SER
23
B
SER
24
n
23
SER
24
B
TYR
25
n
24
TYR
25
B
GLY
26
n
25
GLY
26
B
CYS
27
n
26
CYS
27
B
TYR
28
n
27
TYR
28
B
CYS
29
n
28
CYS
29
B
GLY
30
n
29
GLY
30
B
TRP
31
n
30
TRP
31
B
GLY
32
n
31
GLY
32
B
GLY
33
n
32
GLY
33
B
LYS
34
n
33
LYS
34
B
GLY
35
n
34
GLY
35
B
THR
36
n
35
THR
36
B
PRO
37
n
36
PRO
37
B
LYS
38
n
37
LYS
38
B
ASP
39
n
38
ASP
39
B
ALA
40
n
39
ALA
40
B
THR
41
n
40
THR
41
B
ASP
42
n
41
ASP
42
B
ARG
43
n
42
ARG
43
B
CYS
44
n
43
CYS
44
B
CYS
45
n
44
CYS
45
B
PHE
46
n
45
PHE
46
B
VAL
47
n
46
VAL
47
B
HIS
48
n
47
HIS
48
B
ASP
49
n
48
ASP
49
B
CYS
50
n
49
CYS
50
B
CYS
51
n
50
CYS
51
B
TYR
52
n
51
TYR
52
B
GLY
53
n
52
GLY
53
B
ASN
54
n
53
ASN
54
B
LEU
55
n
54
LEU
55
B
PRO
56
n
55
PRO
56
B
ASP
59
n
56
ASP
59
B
CYS
61
n
57
CYS
61
B
ASN
67
n
58
ASN
67
B
PRO
68
n
59
PRO
68
B
LYS
69
n
60
LYS
69
B
SER
70
n
61
SER
70
B
ASP
71
n
62
ASP
71
B
ARG
72
n
63
ARG
72
B
TYR
73
n
64
TYR
73
B
LYS
74
n
65
LYS
74
B
TYR
75
n
66
TYR
75
B
LYS
76
n
67
LYS
76
B
ARG
77
n
68
ARG
77
B
VAL
78
n
69
VAL
78
B
ASN
79
n
70
ASN
79
B
GLY
80
n
71
GLY
80
B
ALA
81
n
72
ALA
81
B
ILE
82
n
73
ILE
82
B
VAL
83
n
74
VAL
83
B
CYS
84
n
75
CYS
84
B
GLU
85
n
76
GLU
85
B
LYS
86
n
77
LYS
86
B
GLY
88
n
78
GLY
88
B
THR
89
n
79
THR
89
B
SER
90
n
80
SER
90
B
CYS
91
n
81
CYS
91
B
GLU
92
n
82
GLU
92
B
ASN
93
n
83
ASN
93
B
ARG
94
n
84
ARG
94
B
ILE
95
n
85
ILE
95
B
CYS
96
n
86
CYS
96
B
GLU
97
n
87
GLU
97
B
CYS
98
n
88
CYS
98
B
ASP
99
n
89
ASP
99
B
LYS
100
n
90
LYS
100
B
ALA
101
n
91
ALA
101
B
ALA
102
n
92
ALA
102
B
ALA
103
n
93
ALA
103
B
ILE
104
n
94
ILE
104
B
CYS
105
n
95
CYS
105
B
PHE
106
n
96
PHE
106
B
ARG
107
n
97
ARG
107
B
GLN
108
n
98
GLN
108
B
ASN
109
n
99
ASN
109
B
LEU
110
n
100
LEU
110
B
ASN
111
n
101
ASN
111
B
THR
112
n
102
THR
112
B
TYR
113
n
103
TYR
113
B
SER
114
n
104
SER
114
B
LYS
115
n
105
LYS
115
B
LYS
116
n
106
LYS
116
B
TYR
117
n
107
TYR
117
B
MET
118
n
108
MET
118
B
LEU
119
n
109
LEU
119
B
TYR
120
n
110
TYR
120
B
PRO
121
n
111
PRO
121
B
ASP
122
n
112
ASP
122
B
PHE
124
n
113
PHE
124
B
LEU
125
n
114
LEU
125
B
CYS
126
n
115
CYS
126
B
LYS
127
n
116
LYS
127
B
GLY
128
n
117
GLY
128
B
GLU
129
n
118
GLU
129
B
LEU
130
n
119
LEU
130
B
LYS
131
n
120
LYS
131
B
CYS
133
n
121
CYS
133
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
76
A
N
LYS
67
A
O
VAL
83
A
O
VAL
74
B
N
LYS
76
B
N
LYS
67
B
O
VAL
83
B
O
VAL
74
1
A
HOH
596
H
HOH
1
B
HOH
577
I
HOH
1
B
HOH
589
I
HOH
1
B
HOH
598
I
HOH
1
B
HOH
658
I
HOH
1
A
C18
VIT
401
WRONG HAND
1
A
C23
VIT
401
WRONG HAND
1
A
A
C
N
GLY
TRP
30
31
1.16
1
22.54
2.00
110.40
132.94
A
A
A
CB
CA
C
TRP
TRP
TRP
31
31
31
N
1
-18.29
1.80
110.60
92.31
A
A
A
N
CA
CB
TRP
TRP
TRP
31
31
31
N
1
41.12
1.90
113.70
154.82
A
A
A
CA
CB
CG
TRP
TRP
TRP
31
31
31
N
1
-22.99
2.60
111.60
88.61
A
A
A
CB
CG
CD
LYS
LYS
LYS
127
127
127
N
1
49.06
3.00
111.90
160.96
A
A
A
CG
CD
CE
LYS
LYS
LYS
127
127
127
N
1
A
A
C
N
GLY
TRP
30
31
-0.174
0.023
1.336
1.162
Y
1
A
A
CA
CB
TRP
TRP
31
31
-0.330
0.022
1.535
1.205
N
1
A
A
CG
CD
LYS
LYS
127
127
-0.229
0.034
1.520
1.291
N
1
A
A
CD
CE
LYS
LYS
127
127
-0.244
0.025
1.508
1.264
N
1
A
SER
24
-147.18
19.47
1
A
ASP
39
-163.17
-168.99
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
VIT.PARAM
VIT.TOP
PAR.PARAM
TOP.TOP
29.7
Used weighted full matrix least squares procedure
0.228
0.007
0.197
0.197
0.197
1.80
20.0
1139
23652
23652
4.8
95.8
RANDOM
0.000000
0.000000
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
1CL5
ENGH & HUBER
FLAT MODEL
70.6763
0.422816
0.25
0.21
5.00
0.15
0.11
1.80
20.0
322
2241
31
0
1888
0.024
2.8
22.5
4.01
0.90
1.50
1.50
2.00
1.36
2.00
2.10
2.50
0.263
0.019
0.226
1.91
189
3803
1609
6
4.7
98.8
21.9
1.800
20.00
1KPM
23652
23652
0
0.000
0.04
0.038
1
9.9300
6.600
95.8
0.185
1.80
1.84
2.1
1609
0.084
2.40
99.0
data collection
MAR345
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
0.9
First Structural Evidence of a Specific Inhibition of Phospholipase A2 by Vitamin E and its Implications in Inflammation: Crystal Structure of the Complex Formed between Phospholipase A2 and Vitamin E at 1.8 A Resolution.
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
The two protein chains (A and B) represent the two molecules in the asymmetric unit, with the A molecule containing the inhibitor vitamin E
A
SER
1
A
SER
1
HELX_P
A
GLY
14
A
GLY
14
1
1
14
A
LEU
17
A
LEU
16
HELX_P
A
TYR
22
A
TYR
21
1
2
6
A
ASP
39
A
ASP
38
HELX_P
A
ASN
54
A
ASN
53
1
3
16
A
THR
89
A
THR
79
HELX_P
A
ASN
109
A
ASN
99
1
4
21
A
LEU
110
A
LEU
100
HELX_P
A
TYR
113
A
TYR
103
5
5
4
A
SER
114
A
SER
104
HELX_P
A
MET
118
A
MET
108
5
6
5
A
PRO
121
A
PRO
111
HELX_P
A
CYS
126
A
CYS
115
5
7
5
B
SER
1
B
SER
1
HELX_P
B
GLY
14
B
GLY
14
1
8
14
B
LEU
17
B
LEU
16
HELX_P
B
TYR
22
B
TYR
21
1
9
6
B
ASP
39
B
ASP
38
HELX_P
B
ASN
54
B
ASN
53
1
10
16
B
THR
89
B
THR
79
HELX_P
B
ASN
109
B
ASN
99
1
11
21
B
LEU
110
B
LEU
100
HELX_P
B
TYR
113
B
TYR
103
5
12
4
B
SER
114
B
SER
104
HELX_P
B
MET
118
B
MET
108
5
13
5
B
PRO
121
B
PRO
111
HELX_P
B
CYS
126
B
CYS
115
5
14
5
disulf
2.023
A
CYS
27
A
SG
CYS
26
1_555
A
CYS
126
A
SG
CYS
115
1_555
disulf
2.033
A
CYS
29
A
SG
CYS
28
1_555
A
CYS
45
A
SG
CYS
44
1_555
disulf
2.033
A
CYS
44
A
SG
CYS
43
1_555
A
CYS
105
A
SG
CYS
95
1_555
disulf
2.027
A
CYS
50
A
SG
CYS
49
1_555
A
CYS
133
A
SG
CYS
121
1_555
disulf
2.024
A
CYS
51
A
SG
CYS
50
1_555
A
CYS
98
A
SG
CYS
88
1_555
disulf
2.031
A
CYS
61
A
SG
CYS
57
1_555
A
CYS
91
A
SG
CYS
81
1_555
disulf
2.030
A
CYS
84
A
SG
CYS
75
1_555
A
CYS
96
A
SG
CYS
86
1_555
disulf
2.027
B
CYS
27
B
SG
CYS
26
1_555
B
CYS
126
B
SG
CYS
115
1_555
disulf
2.036
B
CYS
29
B
SG
CYS
28
1_555
B
CYS
45
B
SG
CYS
44
1_555
disulf
2.026
B
CYS
44
B
SG
CYS
43
1_555
B
CYS
105
B
SG
CYS
95
1_555
disulf
2.029
B
CYS
50
B
SG
CYS
49
1_555
B
CYS
133
B
SG
CYS
121
1_555
disulf
2.033
B
CYS
51
B
SG
CYS
50
1_555
B
CYS
98
B
SG
CYS
88
1_555
disulf
2.028
B
CYS
61
B
SG
CYS
57
1_555
B
CYS
91
B
SG
CYS
81
1_555
disulf
2.027
B
CYS
84
B
SG
CYS
75
1_555
B
CYS
96
B
SG
CYS
86
1_555
HYDROLASE
phospholipase A2, Daboia russelli pulchella, neurotoxic, inflammation, HYDROLASE
A
ILE
19
A
ILE
18
1
A
PRO
20
A
PRO
19
0.69
B
ILE
19
B
ILE
18
1
B
PRO
20
B
PRO
19
0.63
PA28_DABRP
UNP
1
1
P59071
SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCC
1
50
1KPM
1
51
P59071
A
1
1
50
1
50
1KPM
1
51
P59071
B
1
1
50
2
2
anti-parallel
anti-parallel
A
TYR
75
A
TYR
66
A
VAL
78
A
VAL
69
A
ALA
81
A
ALA
72
A
CYS
84
A
CYS
75
B
TYR
75
B
TYR
66
B
VAL
78
B
VAL
69
B
ALA
81
B
ALA
72
B
CYS
84
B
CYS
75
BINDING SITE FOR RESIDUE VIT A 401
A
VIT
401
Software
17
BINDING SITE FOR RESIDUE ACY B 501
B
ACY
501
Software
4
BINDING SITE FOR RESIDUE ACY B 502
B
ACY
502
Software
5
BINDING SITE FOR RESIDUE ACY B 503
B
ACY
503
Software
3
BINDING SITE FOR RESIDUE ACY A 504
A
ACY
504
Software
3
A
LEU
2
A
LEU
2
17
1_555
A
LEU
3
A
LEU
3
17
1_555
A
GLY
6
A
GLY
6
17
1_555
A
LYS
7
A
LYS
7
17
1_555
A
ALA
18
A
ALA
17
17
1_555
A
ILE
19
A
ILE
18
17
1_555
A
TYR
22
A
TYR
21
17
1_555
A
SER
23
A
SER
22
17
1_555
A
TYR
28
A
TYR
27
17
1_555
A
CYS
45
A
CYS
44
17
1_555
A
HIS
48
A
HIS
47
17
1_555
A
ASP
49
A
ASP
48
17
1_555
A
LYS
69
A
LYS
60
17
1_555
A
HOH
508
H
HOH
17
1_555
A
HOH
517
H
HOH
17
1_555
B
ASN
54
B
ASN
53
17
1_555
B
CYS
133
B
CYS
121
17
1_555
A
PRO
121
A
PRO
111
4
4_566
B
GLU
11
B
GLU
11
4
1_555
B
ARG
77
B
ARG
68
4
1_555
B
ARG
107
B
ARG
97
4
1_555
A
PRO
121
A
PRO
111
5
4_566
A
PHE
124
A
PHE
113
5
4_566
B
ARG
107
B
ARG
97
5
1_555
B
GLN
108
B
GLN
98
5
4_566
B
HOH
540
I
HOH
5
4_566
B
THR
89
B
THR
79
3
1_555
B
SER
90
B
SER
80
3
1_555
B
HOH
596
I
HOH
3
1_555
A
ARG
43
A
ARG
42
3
1_555
A
HOH
537
H
HOH
3
1_555
A
HOH
641
H
HOH
3
1_555
20
C 2 2 21