1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rosengren, K.J.
Wilson, D.
Daly, N.L.
Alewood, P.F.
Craik, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
41
3294
3301
10.1021/bi011932y
11876637
Solution structures of the cis- and trans-Pro30 isomers of a novel 38-residue toxin
from the venom of Hadronyche Infensa sp. that contains a cystine-knot motif within
its four disulfide bonds
2002
10.2210/pdb1kqi/pdb
pdb_00001kqi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4230.953
ACTX-Hi:OB4219
1
nat
polymer
no
no
KCLAEAADCSPWSGDSCCKPYLCSCIFFYPCSCRPKGW
KCLAEAADCSPWSGDSCCKPYLCSCIFFYPCSCRPKGW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Hadronyche infensa found at Orchid Beach, Fraser Island, Australia
Hadronyche
sample
153481
Hadronyche infensa
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-02-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
NMR solution structure of the cis Pro30 isomer of ACTX-Hi:OB4219
RCSB
Y
RCSB
2002-01-06
REL
REL
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations, structures with the lowest energy
50
20
DQF-COSY
NOESY
TOCSY
E-COSY
NOESY
TOCSY
0 mM
5.0
ambient
298
K
0 mM
5.0
ambient
293
K
0 mM
5.0
ambient
303
K
Initial structures were generated by torsion angle dynamics.
These were then refined and minimized in a water shell using
Cartesian dynamics and restrained powell minimization according
to ARIA and CNS protocols.
Torsion angle dynamics.
Refinement and energy minimization in a water shell using Cartesian dynamics and powell minimization.
1
lowest energy
3mg ACTX-Hi:OB4219
0.5 ml 80% H2O/10% D2O/10% CH3CN
3mg ACTX-Hi:OB4219
0.5 ml 90% D2O/10% CH3CN
Bruker
processing
XwinNMR
2.6
Eccles, C., Guntert, P., Billeter, M., Wuthrich, K.
data analysis
XEASY
1.3.7
Guntert, P., Mumenthaler, C., Wuthrich, K.
structure solution
DYANA
1.5
Brunger, A.T. et al.
structure solution
CNS
1.0
Linge, J.P., O'Donoghue, S.I., Nilges, M.N.
refinement
ARIA
1.0
750
Bruker
DMX
500
Bruker
AMX
LYS
1
n
1
LYS
1
A
CYS
2
n
2
CYS
2
A
LEU
3
n
3
LEU
3
A
ALA
4
n
4
ALA
4
A
GLU
5
n
5
GLU
5
A
ALA
6
n
6
ALA
6
A
ALA
7
n
7
ALA
7
A
ASP
8
n
8
ASP
8
A
CYS
9
n
9
CYS
9
A
SER
10
n
10
SER
10
A
PRO
11
n
11
PRO
11
A
TRP
12
n
12
TRP
12
A
SER
13
n
13
SER
13
A
GLY
14
n
14
GLY
14
A
ASP
15
n
15
ASP
15
A
SER
16
n
16
SER
16
A
CYS
17
n
17
CYS
17
A
CYS
18
n
18
CYS
18
A
LYS
19
n
19
LYS
19
A
PRO
20
n
20
PRO
20
A
TYR
21
n
21
TYR
21
A
LEU
22
n
22
LEU
22
A
CYS
23
n
23
CYS
23
A
SER
24
n
24
SER
24
A
CYS
25
n
25
CYS
25
A
ILE
26
n
26
ILE
26
A
PHE
27
n
27
PHE
27
A
PHE
28
n
28
PHE
28
A
TYR
29
n
29
TYR
29
A
PRO
30
n
30
PRO
30
A
CYS
31
n
31
CYS
31
A
SER
32
n
32
SER
32
A
CYS
33
n
33
CYS
33
A
ARG
34
n
34
ARG
34
A
PRO
35
n
35
PRO
35
A
LYS
36
n
36
LYS
36
A
GLY
37
n
37
GLY
37
A
TRP
38
n
38
TRP
38
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
7
A
N
ALA
7
A
O
CYS
33
A
O
CYS
33
A
O
SER
32
A
O
SER
32
A
N
SER
24
A
N
SER
24
1
A
A
HZ2
OD1
LYS
ASP
1
15
1.54
2
A
A
HZ2
OD2
LYS
ASP
1
15
1.57
4
A
A
HZ1
OD2
LYS
ASP
1
15
1.59
5
A
A
HZ1
OD2
LYS
ASP
1
15
1.57
6
A
A
H3
OD2
LYS
ASP
1
15
1.60
7
A
A
HZ3
OD2
LYS
ASP
1
15
1.53
8
A
A
HZ3
OD1
LYS
ASP
1
15
1.58
12
A
A
H3
OD1
LYS
ASP
1
15
1.55
13
A
A
HZ2
OD2
LYS
ASP
1
15
1.55
14
A
A
HZ3
OD2
LYS
ASP
1
15
1.59
16
A
A
HZ1
OD2
LYS
ASP
1
15
1.52
16
A
A
H3
OD1
LYS
ASP
1
15
1.59
17
A
A
HZ3
OD2
LYS
ASP
1
15
1.58
19
A
A
H3
OD2
LYS
ASP
1
15
1.57
20
A
A
HD1
HA
TYR
PRO
21
35
1.23
20
A
A
HZ3
OD2
LYS
ASP
1
15
1.57
1
A
ALA
4
-78.90
-166.90
1
A
CYS
25
-119.97
52.29
1
A
CYS
31
-49.48
104.35
2
A
ALA
4
-79.09
-162.44
2
A
PRO
30
-68.59
-171.26
3
A
PRO
20
-99.00
52.31
3
A
ILE
26
-109.59
-168.02
3
A
CYS
31
-58.53
102.13
4
A
TRP
12
-128.41
-54.28
4
A
PRO
20
-95.45
40.06
4
A
CYS
31
-51.89
106.75
5
A
ALA
4
-79.27
-158.38
5
A
TRP
12
-137.17
-53.22
5
A
PRO
30
-64.72
-175.89
5
A
CYS
31
-52.65
105.60
6
A
ALA
4
-78.32
-164.95
6
A
ALA
6
70.35
35.52
6
A
CYS
25
-100.08
72.93
6
A
PRO
30
-66.23
-165.12
6
A
CYS
31
-62.43
99.17
7
A
ALA
4
-78.41
-166.04
7
A
PRO
20
-98.08
38.67
7
A
CYS
31
-51.31
103.16
8
A
ALA
4
-78.15
-168.62
8
A
SER
13
-173.21
148.57
8
A
CYS
25
-101.79
68.97
8
A
PRO
30
-65.15
-174.59
8
A
CYS
31
-59.38
99.91
9
A
ALA
4
-78.48
-168.56
9
A
TRP
12
-136.53
-34.20
9
A
SER
13
-77.77
44.79
9
A
CYS
25
-143.25
53.92
9
A
CYS
31
-48.64
97.93
10
A
ALA
4
-78.31
-163.41
10
A
CYS
25
-143.30
58.43
10
A
CYS
31
-52.32
99.25
11
A
SER
13
-174.18
148.14
11
A
CYS
31
-57.61
95.52
12
A
ALA
4
-78.79
-162.18
12
A
SER
13
-174.09
149.35
12
A
PRO
20
-104.64
40.98
12
A
CYS
25
-118.99
59.04
12
A
PHE
27
-67.01
-81.62
12
A
PHE
28
-79.86
36.06
13
A
ALA
4
-78.41
-168.09
13
A
SER
13
-175.47
139.09
13
A
PRO
20
-101.00
44.53
13
A
CYS
31
-50.33
108.55
14
A
ALA
4
-78.01
-165.88
14
A
SER
13
-175.36
143.93
14
A
CYS
25
-103.96
58.41
14
A
CYS
31
-54.84
100.80
15
A
ALA
4
-78.62
-166.78
15
A
TRP
12
-137.54
-51.44
15
A
CYS
25
-103.10
76.60
15
A
PRO
30
-67.17
-158.92
15
A
CYS
31
-68.28
77.38
16
A
ALA
4
-78.77
-163.48
16
A
CYS
25
-110.13
54.89
16
A
CYS
31
-50.92
96.51
17
A
ALA
4
-78.65
-166.65
17
A
SER
13
-177.79
138.55
17
A
PRO
20
-97.82
32.28
17
A
PRO
30
-67.20
-167.95
17
A
PRO
35
-47.62
163.95
18
A
ALA
4
-79.43
-155.52
18
A
PRO
20
-102.66
44.82
18
A
CYS
31
-52.41
105.38
19
A
ALA
4
-78.16
-169.75
19
A
SER
13
-176.59
140.67
19
A
PRO
20
-103.55
43.33
19
A
TYR
21
-73.37
-164.33
19
A
CYS
25
-112.05
77.77
19
A
PRO
30
-64.83
-166.99
19
A
CYS
31
-58.32
103.72
20
A
ALA
4
-78.43
-166.37
20
A
SER
13
-178.17
126.29
20
A
CYS
25
-113.17
65.78
20
A
PRO
30
-67.19
-160.75
20
A
CYS
31
-59.14
98.51
NMR Solution Structure of the trans Pro30 Isomer of ACTX-Hi:OB4219
1
N
N
disulf
2.029
A
CYS
2
A
SG
CYS
2
1_555
A
CYS
18
A
SG
CYS
18
1_555
disulf
2.031
A
CYS
9
A
SG
CYS
9
1_555
A
CYS
23
A
SG
CYS
23
1_555
disulf
2.029
A
CYS
17
A
SG
CYS
17
1_555
A
CYS
33
A
SG
CYS
33
1_555
disulf
2.033
A
CYS
25
A
SG
CYS
25
1_555
A
CYS
31
A
SG
CYS
31
1_555
TOXIN
Hadronyche infensa, funnel web, spider venom, cis-trans isomerisation, disulfide rich, cystine knot, solution structure, NMR spectroscopy, TOXIN
A
LYS
19
A
LYS
19
1
A
PRO
20
A
PRO
20
1.06
A
LYS
19
A
LYS
19
2
A
PRO
20
A
PRO
20
1.45
A
LYS
19
A
LYS
19
3
A
PRO
20
A
PRO
20
1.13
A
LYS
19
A
LYS
19
4
A
PRO
20
A
PRO
20
1.46
A
LYS
19
A
LYS
19
5
A
PRO
20
A
PRO
20
0.94
A
LYS
19
A
LYS
19
6
A
PRO
20
A
PRO
20
1.31
A
LYS
19
A
LYS
19
7
A
PRO
20
A
PRO
20
1.25
A
LYS
19
A
LYS
19
8
A
PRO
20
A
PRO
20
1.11
A
LYS
19
A
LYS
19
9
A
PRO
20
A
PRO
20
1.05
A
LYS
19
A
LYS
19
10
A
PRO
20
A
PRO
20
0.94
A
LYS
19
A
LYS
19
11
A
PRO
20
A
PRO
20
1.22
A
LYS
19
A
LYS
19
12
A
PRO
20
A
PRO
20
1.29
A
LYS
19
A
LYS
19
13
A
PRO
20
A
PRO
20
1.49
A
LYS
19
A
LYS
19
14
A
PRO
20
A
PRO
20
1.32
A
LYS
19
A
LYS
19
15
A
PRO
20
A
PRO
20
1.08
A
LYS
19
A
LYS
19
16
A
PRO
20
A
PRO
20
1.38
A
LYS
19
A
LYS
19
17
A
PRO
20
A
PRO
20
1.22
A
LYS
19
A
LYS
19
18
A
PRO
20
A
PRO
20
1.33
A
LYS
19
A
LYS
19
19
A
PRO
20
A
PRO
20
1.19
A
LYS
19
A
LYS
19
20
A
PRO
20
A
PRO
20
1.37
1KQI
PDB
1
1KQI
1
38
1KQI
1
38
1KQI
A
1
1
38
3
anti-parallel
anti-parallel
A
ALA
7
A
ALA
7
A
ASP
8
A
ASP
8
A
SER
32
A
SER
32
A
ARG
34
A
ARG
34
A
LEU
22
A
LEU
22
A
SER
24
A
SER
24