0.011969
0.000000
0.007643
0.000000
0.020040
0.000000
0.000000
0.000000
0.016709
0.00000
0.00000
0.00000
Messick, T.E.
Chmiel, N.H.
Golinelli, M.P.
David, S.S.
Joshua-Tor, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
122.56
90.00
83.550
49.900
71.010
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
Fe4 S4
351.640
IRON/SULFUR CLUSTER
non-polymer
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
FE
N
319
N
FE
N
320
N
FE
N
321
N
FE
N
322
N
S
N
323
N
S
N
324
N
S
N
325
N
S
N
326
N
S
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
O
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
R
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
N
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
O
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
C
N
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
41
3931
3942
10.1021/bi012035x
11900536
Noncysteinyl coordination to the [4Fe-4S]2+ cluster of the DNA repair adenine glycosylase MutY introduced via site-directed mutagenesis. Structural characterization of an unusual histidinyl-coordinated cluster.
2002
10.2210/pdb1kqj/pdb
pdb_00001kqj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1999-05-07
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.1000
1.0
X26C
NSLS
1.1000
SYNCHROTRON
NSLS BEAMLINE X26C
25083.994
A/G-SPECIFIC ADENINE GLYCOSYLASE
3.2.2.-
Catalytic domain (RESIDUES 1-225)
C199H
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
351.640
IRON/SULFUR CLUSTER
1
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
232
nat
water
no
no
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGL
GYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKHSLCPLQNGCIAAANNSWALYPGKKPK
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGL
GYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKHSLCPLQNGCIAAANNSWALYPGKKPK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
MutY
562
Escherichia coli
562
Escherichia coli
JM101 MutY-
plasmid
pKKY
1
2.42
48.7
VAPOR DIFFUSION, HANGING DROP
8.0
ammonium sulfate, tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K
300
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2002-04-10
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Catalytic domain of MutY from Escherichia Coli
Catalytic domain of MutY from Escherichia Coli, D138N mutant complexed with adenine
Catalytic domain of MutY From Escherichia Coli D138N Mutant
RCSB
Y
RCSB
2002-01-06
REL
SO4
SULFATE ION
SF4
IRON/SULFUR CLUSTER
GOL
GLYCEROL
HOH
water
1MUY
PDB ENTRY 1MUY
PDB
experimental model
SO4
301
2
SO4
SO4
301
A
FS4
300
3
SF4
SF4
300
A
CRY
302
4
GOL
GOL
302
A
CRY
303
4
GOL
GOL
303
A
CRY
304
4
GOL
GOL
304
A
WAT
401
5
HOH
HOH
401
A
WAT
402
5
HOH
HOH
402
A
WAT
403
5
HOH
HOH
403
A
WAT
404
5
HOH
HOH
404
A
WAT
405
5
HOH
HOH
405
A
WAT
406
5
HOH
HOH
406
A
WAT
407
5
HOH
HOH
407
A
WAT
408
5
HOH
HOH
408
A
WAT
409
5
HOH
HOH
409
A
WAT
410
5
HOH
HOH
410
A
WAT
411
5
HOH
HOH
411
A
WAT
412
5
HOH
HOH
412
A
WAT
413
5
HOH
HOH
413
A
WAT
414
5
HOH
HOH
414
A
WAT
415
5
HOH
HOH
415
A
WAT
416
5
HOH
HOH
416
A
WAT
417
5
HOH
HOH
417
A
WAT
418
5
HOH
HOH
418
A
WAT
419
5
HOH
HOH
419
A
WAT
420
5
HOH
HOH
420
A
WAT
421
5
HOH
HOH
421
A
WAT
422
5
HOH
HOH
422
A
WAT
423
5
HOH
HOH
423
A
WAT
424
5
HOH
HOH
424
A
WAT
425
5
HOH
HOH
425
A
WAT
426
5
HOH
HOH
426
A
WAT
427
5
HOH
HOH
427
A
WAT
428
5
HOH
HOH
428
A
WAT
429
5
HOH
HOH
429
A
WAT
430
5
HOH
HOH
430
A
WAT
431
5
HOH
HOH
431
A
WAT
432
5
HOH
HOH
432
A
WAT
433
5
HOH
HOH
433
A
WAT
434
5
HOH
HOH
434
A
WAT
435
5
HOH
HOH
435
A
WAT
436
5
HOH
HOH
436
A
WAT
437
5
HOH
HOH
437
A
WAT
438
5
HOH
HOH
438
A
WAT
439
5
HOH
HOH
439
A
WAT
440
5
HOH
HOH
440
A
WAT
441
5
HOH
HOH
441
A
WAT
442
5
HOH
HOH
442
A
WAT
443
5
HOH
HOH
443
A
WAT
444
5
HOH
HOH
444
A
WAT
445
5
HOH
HOH
445
A
WAT
446
5
HOH
HOH
446
A
WAT
447
5
HOH
HOH
447
A
WAT
448
5
HOH
HOH
448
A
WAT
449
5
HOH
HOH
449
A
WAT
450
5
HOH
HOH
450
A
WAT
451
5
HOH
HOH
451
A
WAT
452
5
HOH
HOH
452
A
WAT
453
5
HOH
HOH
453
A
WAT
454
5
HOH
HOH
454
A
WAT
455
5
HOH
HOH
455
A
WAT
456
5
HOH
HOH
456
A
WAT
457
5
HOH
HOH
457
A
WAT
458
5
HOH
HOH
458
A
WAT
459
5
HOH
HOH
459
A
WAT
460
5
HOH
HOH
460
A
WAT
461
5
HOH
HOH
461
A
WAT
462
5
HOH
HOH
462
A
WAT
463
5
HOH
HOH
463
A
WAT
464
5
HOH
HOH
464
A
WAT
465
5
HOH
HOH
465
A
WAT
466
5
HOH
HOH
466
A
WAT
467
5
HOH
HOH
467
A
WAT
468
5
HOH
HOH
468
A
WAT
469
5
HOH
HOH
469
A
WAT
470
5
HOH
HOH
470
A
WAT
471
5
HOH
HOH
471
A
WAT
472
5
HOH
HOH
472
A
WAT
473
5
HOH
HOH
473
A
WAT
474
5
HOH
HOH
474
A
WAT
475
5
HOH
HOH
475
A
WAT
476
5
HOH
HOH
476
A
WAT
477
5
HOH
HOH
477
A
WAT
478
5
HOH
HOH
478
A
WAT
479
5
HOH
HOH
479
A
WAT
480
5
HOH
HOH
480
A
WAT
481
5
HOH
HOH
481
A
WAT
482
5
HOH
HOH
482
A
WAT
483
5
HOH
HOH
483
A
WAT
484
5
HOH
HOH
484
A
WAT
485
5
HOH
HOH
485
A
WAT
486
5
HOH
HOH
486
A
WAT
487
5
HOH
HOH
487
A
WAT
488
5
HOH
HOH
488
A
WAT
489
5
HOH
HOH
489
A
WAT
490
5
HOH
HOH
490
A
WAT
491
5
HOH
HOH
491
A
WAT
492
5
HOH
HOH
492
A
WAT
493
5
HOH
HOH
493
A
WAT
494
5
HOH
HOH
494
A
WAT
495
5
HOH
HOH
495
A
WAT
496
5
HOH
HOH
496
A
WAT
497
5
HOH
HOH
497
A
WAT
498
5
HOH
HOH
498
A
WAT
499
5
HOH
HOH
499
A
WAT
500
5
HOH
HOH
500
A
WAT
501
5
HOH
HOH
501
A
WAT
502
5
HOH
HOH
502
A
WAT
503
5
HOH
HOH
503
A
WAT
504
5
HOH
HOH
504
A
WAT
505
5
HOH
HOH
505
A
WAT
506
5
HOH
HOH
506
A
WAT
507
5
HOH
HOH
507
A
WAT
508
5
HOH
HOH
508
A
WAT
509
5
HOH
HOH
509
A
WAT
510
5
HOH
HOH
510
A
WAT
511
5
HOH
HOH
511
A
WAT
512
5
HOH
HOH
512
A
WAT
513
5
HOH
HOH
513
A
WAT
514
5
HOH
HOH
514
A
WAT
515
5
HOH
HOH
515
A
WAT
516
5
HOH
HOH
516
A
WAT
517
5
HOH
HOH
517
A
WAT
518
5
HOH
HOH
518
A
WAT
519
5
HOH
HOH
519
A
WAT
520
5
HOH
HOH
520
A
WAT
521
5
HOH
HOH
521
A
WAT
522
5
HOH
HOH
522
A
WAT
523
5
HOH
HOH
523
A
WAT
524
5
HOH
HOH
524
A
WAT
525
5
HOH
HOH
525
A
WAT
526
5
HOH
HOH
526
A
WAT
527
5
HOH
HOH
527
A
WAT
528
5
HOH
HOH
528
A
WAT
529
5
HOH
HOH
529
A
WAT
530
5
HOH
HOH
530
A
WAT
531
5
HOH
HOH
531
A
WAT
532
5
HOH
HOH
532
A
WAT
533
5
HOH
HOH
533
A
WAT
534
5
HOH
HOH
534
A
WAT
535
5
HOH
HOH
535
A
WAT
536
5
HOH
HOH
536
A
WAT
537
5
HOH
HOH
537
A
WAT
538
5
HOH
HOH
538
A
WAT
539
5
HOH
HOH
539
A
WAT
540
5
HOH
HOH
540
A
WAT
541
5
HOH
HOH
541
A
WAT
542
5
HOH
HOH
542
A
WAT
543
5
HOH
HOH
543
A
WAT
544
5
HOH
HOH
544
A
WAT
545
5
HOH
HOH
545
A
WAT
546
5
HOH
HOH
546
A
WAT
547
5
HOH
HOH
547
A
WAT
548
5
HOH
HOH
548
A
WAT
549
5
HOH
HOH
549
A
WAT
550
5
HOH
HOH
550
A
WAT
551
5
HOH
HOH
551
A
WAT
552
5
HOH
HOH
552
A
WAT
553
5
HOH
HOH
553
A
WAT
554
5
HOH
HOH
554
A
WAT
555
5
HOH
HOH
555
A
WAT
556
5
HOH
HOH
556
A
WAT
557
5
HOH
HOH
557
A
WAT
558
5
HOH
HOH
558
A
WAT
559
5
HOH
HOH
559
A
WAT
560
5
HOH
HOH
560
A
WAT
561
5
HOH
HOH
561
A
WAT
562
5
HOH
HOH
562
A
WAT
563
5
HOH
HOH
563
A
WAT
564
5
HOH
HOH
564
A
WAT
565
5
HOH
HOH
565
A
WAT
566
5
HOH
HOH
566
A
WAT
567
5
HOH
HOH
567
A
WAT
568
5
HOH
HOH
568
A
WAT
569
5
HOH
HOH
569
A
WAT
570
5
HOH
HOH
570
A
WAT
571
5
HOH
HOH
571
A
WAT
572
5
HOH
HOH
572
A
WAT
573
5
HOH
HOH
573
A
WAT
574
5
HOH
HOH
574
A
WAT
575
5
HOH
HOH
575
A
WAT
576
5
HOH
HOH
576
A
WAT
577
5
HOH
HOH
577
A
WAT
578
5
HOH
HOH
578
A
WAT
579
5
HOH
HOH
579
A
WAT
580
5
HOH
HOH
580
A
WAT
581
5
HOH
HOH
581
A
WAT
582
5
HOH
HOH
582
A
WAT
583
5
HOH
HOH
583
A
WAT
584
5
HOH
HOH
584
A
WAT
585
5
HOH
HOH
585
A
WAT
586
5
HOH
HOH
586
A
WAT
587
5
HOH
HOH
587
A
WAT
588
5
HOH
HOH
588
A
WAT
589
5
HOH
HOH
589
A
WAT
590
5
HOH
HOH
590
A
WAT
591
5
HOH
HOH
591
A
WAT
592
5
HOH
HOH
592
A
WAT
593
5
HOH
HOH
593
A
WAT
594
5
HOH
HOH
594
A
WAT
595
5
HOH
HOH
595
A
WAT
596
5
HOH
HOH
596
A
WAT
597
5
HOH
HOH
597
A
WAT
598
5
HOH
HOH
598
A
WAT
599
5
HOH
HOH
599
A
WAT
600
5
HOH
HOH
600
A
WAT
601
5
HOH
HOH
601
A
WAT
602
5
HOH
HOH
602
A
WAT
603
5
HOH
HOH
603
A
WAT
604
5
HOH
HOH
604
A
WAT
605
5
HOH
HOH
605
A
WAT
606
5
HOH
HOH
606
A
WAT
607
5
HOH
HOH
607
A
WAT
608
5
HOH
HOH
608
A
WAT
609
5
HOH
HOH
609
A
WAT
610
5
HOH
HOH
610
A
WAT
611
5
HOH
HOH
611
A
WAT
612
5
HOH
HOH
612
A
WAT
613
5
HOH
HOH
613
A
WAT
614
5
HOH
HOH
614
A
WAT
615
5
HOH
HOH
615
A
WAT
616
5
HOH
HOH
616
A
WAT
617
5
HOH
HOH
617
A
WAT
618
5
HOH
HOH
618
A
WAT
619
5
HOH
HOH
619
A
WAT
620
5
HOH
HOH
620
A
WAT
621
5
HOH
HOH
621
A
WAT
622
5
HOH
HOH
622
A
WAT
623
5
HOH
HOH
623
A
WAT
624
5
HOH
HOH
624
A
WAT
625
5
HOH
HOH
625
A
WAT
626
5
HOH
HOH
626
A
WAT
627
5
HOH
HOH
627
A
WAT
628
5
HOH
HOH
628
A
WAT
629
5
HOH
HOH
629
A
WAT
630
5
HOH
HOH
630
A
WAT
631
5
HOH
HOH
631
A
WAT
632
5
HOH
HOH
632
A
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ALA
3
n
3
ALA
3
A
SER
4
n
4
SER
4
A
GLN
5
n
5
GLN
5
A
PHE
6
n
6
PHE
6
A
SER
7
n
7
SER
7
A
ALA
8
n
8
ALA
8
A
GLN
9
n
9
GLN
9
A
VAL
10
n
10
VAL
10
A
LEU
11
n
11
LEU
11
A
ASP
12
n
12
ASP
12
A
TRP
13
n
13
TRP
13
A
TYR
14
n
14
TYR
14
A
ASP
15
n
15
ASP
15
A
LYS
16
n
16
LYS
16
A
TYR
17
n
17
TYR
17
A
GLY
18
n
18
GLY
18
A
ARG
19
n
19
ARG
19
A
LYS
20
n
20
LYS
20
A
THR
21
n
21
THR
21
A
LEU
22
n
22
LEU
22
A
PRO
23
n
23
PRO
23
A
TRP
24
n
24
TRP
24
A
GLN
25
n
25
GLN
25
A
ILE
26
n
26
ILE
26
A
ASP
27
n
27
ASP
27
A
LYS
28
n
28
LYS
28
A
THR
29
n
29
THR
29
A
PRO
30
n
30
PRO
30
A
TYR
31
n
31
TYR
31
A
LYS
32
n
32
LYS
32
A
VAL
33
n
33
VAL
33
A
TRP
34
n
34
TRP
34
A
LEU
35
n
35
LEU
35
A
SER
36
n
36
SER
36
A
GLU
37
n
37
GLU
37
A
VAL
38
n
38
VAL
38
A
MET
39
n
39
MET
39
A
LEU
40
n
40
LEU
40
A
GLN
41
n
41
GLN
41
A
GLN
42
n
42
GLN
42
A
THR
43
n
43
THR
43
A
GLN
44
n
44
GLN
44
A
VAL
45
n
45
VAL
45
A
ALA
46
n
46
ALA
46
A
THR
47
n
47
THR
47
A
VAL
48
n
48
VAL
48
A
ILE
49
n
49
ILE
49
A
PRO
50
n
50
PRO
50
A
TYR
51
n
51
TYR
51
A
PHE
52
n
52
PHE
52
A
GLU
53
n
53
GLU
53
A
ARG
54
n
54
ARG
54
A
PHE
55
n
55
PHE
55
A
MET
56
n
56
MET
56
A
ALA
57
n
57
ALA
57
A
ARG
58
n
58
ARG
58
A
PHE
59
n
59
PHE
59
A
PRO
60
n
60
PRO
60
A
THR
61
n
61
THR
61
A
VAL
62
n
62
VAL
62
A
THR
63
n
63
THR
63
A
ASP
64
n
64
ASP
64
A
LEU
65
n
65
LEU
65
A
ALA
66
n
66
ALA
66
A
ASN
67
n
67
ASN
67
A
ALA
68
n
68
ALA
68
A
PRO
69
n
69
PRO
69
A
LEU
70
n
70
LEU
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
VAL
73
n
73
VAL
73
A
LEU
74
n
74
LEU
74
A
HIS
75
n
75
HIS
75
A
LEU
76
n
76
LEU
76
A
TRP
77
n
77
TRP
77
A
THR
78
n
78
THR
78
A
GLY
79
n
79
GLY
79
A
LEU
80
n
80
LEU
80
A
GLY
81
n
81
GLY
81
A
TYR
82
n
82
TYR
82
A
TYR
83
n
83
TYR
83
A
ALA
84
n
84
ALA
84
A
ARG
85
n
85
ARG
85
A
ALA
86
n
86
ALA
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
HIS
90
n
90
HIS
90
A
LYS
91
n
91
LYS
91
A
ALA
92
n
92
ALA
92
A
ALA
93
n
93
ALA
93
A
GLN
94
n
94
GLN
94
A
GLN
95
n
95
GLN
95
A
VAL
96
n
96
VAL
96
A
ALA
97
n
97
ALA
97
A
THR
98
n
98
THR
98
A
LEU
99
n
99
LEU
99
A
HIS
100
n
100
HIS
100
A
GLY
101
n
101
GLY
101
A
GLY
102
n
102
GLY
102
A
LYS
103
n
103
LYS
103
A
PHE
104
n
104
PHE
104
A
PRO
105
n
105
PRO
105
A
GLU
106
n
106
GLU
106
A
THR
107
n
107
THR
107
A
PHE
108
n
108
PHE
108
A
GLU
109
n
109
GLU
109
A
GLU
110
n
110
GLU
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
ALA
113
n
113
ALA
113
A
LEU
114
n
114
LEU
114
A
PRO
115
n
115
PRO
115
A
GLY
116
n
116
GLY
116
A
VAL
117
n
117
VAL
117
A
GLY
118
n
118
GLY
118
A
ARG
119
n
119
ARG
119
A
SER
120
n
120
SER
120
A
THR
121
n
121
THR
121
A
ALA
122
n
122
ALA
122
A
GLY
123
n
123
GLY
123
A
ALA
124
n
124
ALA
124
A
ILE
125
n
125
ILE
125
A
LEU
126
n
126
LEU
126
A
SER
127
n
127
SER
127
A
LEU
128
n
128
LEU
128
A
SER
129
n
129
SER
129
A
LEU
130
n
130
LEU
130
A
GLY
131
n
131
GLY
131
A
LYS
132
n
132
LYS
132
A
HIS
133
n
133
HIS
133
A
PHE
134
n
134
PHE
134
A
PRO
135
n
135
PRO
135
A
ILE
136
n
136
ILE
136
A
LEU
137
n
137
LEU
137
A
ASP
138
n
138
ASP
138
A
GLY
139
n
139
GLY
139
A
ASN
140
n
140
ASN
140
A
VAL
141
n
141
VAL
141
A
LYS
142
n
142
LYS
142
A
ARG
143
n
143
ARG
143
A
VAL
144
n
144
VAL
144
A
LEU
145
n
145
LEU
145
A
ALA
146
n
146
ALA
146
A
ARG
147
n
147
ARG
147
A
CYS
148
n
148
CYS
148
A
TYR
149
n
149
TYR
149
A
ALA
150
n
150
ALA
150
A
VAL
151
n
151
VAL
151
A
SER
152
n
152
SER
152
A
GLY
153
n
153
GLY
153
A
TRP
154
n
154
TRP
154
A
PRO
155
n
155
PRO
155
A
GLY
156
n
156
GLY
156
A
LYS
157
n
157
LYS
157
A
LYS
158
n
158
LYS
158
A
GLU
159
n
159
GLU
159
A
VAL
160
n
160
VAL
160
A
GLU
161
n
161
GLU
161
A
ASN
162
n
162
ASN
162
A
LYS
163
n
163
LYS
163
A
LEU
164
n
164
LEU
164
A
TRP
165
n
165
TRP
165
A
SER
166
n
166
SER
166
A
LEU
167
n
167
LEU
167
A
SER
168
n
168
SER
168
A
GLU
169
n
169
GLU
169
A
GLN
170
n
170
GLN
170
A
VAL
171
n
171
VAL
171
A
THR
172
n
172
THR
172
A
PRO
173
n
173
PRO
173
A
ALA
174
n
174
ALA
174
A
VAL
175
n
175
VAL
175
A
GLY
176
n
176
GLY
176
A
VAL
177
n
177
VAL
177
A
GLU
178
n
178
GLU
178
A
ARG
179
n
179
ARG
179
A
PHE
180
n
180
PHE
180
A
ASN
181
n
181
ASN
181
A
GLN
182
n
182
GLN
182
A
ALA
183
n
183
ALA
183
A
MET
184
n
184
MET
184
A
MET
185
n
185
MET
185
A
ASP
186
n
186
ASP
186
A
LEU
187
n
187
LEU
187
A
GLY
188
n
188
GLY
188
A
ALA
189
n
189
ALA
189
A
MET
190
n
190
MET
190
A
ILE
191
n
191
ILE
191
A
CYS
192
n
192
CYS
192
A
THR
193
n
193
THR
193
A
ARG
194
n
194
ARG
194
A
SER
195
n
195
SER
195
A
LYS
196
n
196
LYS
196
A
PRO
197
n
197
PRO
197
A
LYS
198
n
198
LYS
198
A
HIS
199
n
199
HIS
199
A
SER
200
n
200
SER
200
A
LEU
201
n
201
LEU
201
A
CYS
202
n
202
CYS
202
A
PRO
203
n
203
PRO
203
A
LEU
204
n
204
LEU
204
A
GLN
205
n
205
GLN
205
A
ASN
206
n
206
ASN
206
A
GLY
207
n
207
GLY
207
A
CYS
208
n
208
CYS
208
A
ILE
209
n
209
ILE
209
A
ALA
210
n
210
ALA
210
A
ALA
211
n
211
ALA
211
A
ALA
212
n
212
ALA
212
A
ASN
213
n
213
ASN
213
A
ASN
214
n
214
ASN
214
A
SER
215
n
215
SER
215
A
TRP
216
n
216
TRP
216
A
ALA
217
n
217
ALA
217
A
LEU
218
n
218
LEU
218
A
TYR
219
n
219
TYR
219
A
PRO
220
n
220
PRO
220
A
GLY
221
n
221
GLY
221
A
LYS
222
n
222
LYS
222
A
LYS
223
n
223
LYS
223
A
PRO
224
n
224
PRO
224
A
LYS
225
n
225
LYS
225
A
author_defined_assembly
1
monomeric
A
CYS
192
A
SG
CYS
192
1_555
A
SF4
300
C
FE2
SF4
1_555
A
SF4
300
C
S1
SF4
1_555
121.9
A
CYS
192
A
SG
CYS
192
1_555
A
SF4
300
C
FE2
SF4
1_555
A
SF4
300
C
S3
SF4
1_555
109.0
A
SF4
300
C
S1
SF4
1_555
A
SF4
300
C
FE2
SF4
1_555
A
SF4
300
C
S3
SF4
1_555
105.6
A
CYS
192
A
SG
CYS
192
1_555
A
SF4
300
C
FE2
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
108.6
A
SF4
300
C
S1
SF4
1_555
A
SF4
300
C
FE2
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
106.3
A
SF4
300
C
S3
SF4
1_555
A
SF4
300
C
FE2
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
104.1
A
HIS
199
A
ND1
HIS
199
1_555
A
SF4
300
C
FE3
SF4
1_555
A
SF4
300
C
S1
SF4
1_555
108.9
A
HIS
199
A
ND1
HIS
199
1_555
A
SF4
300
C
FE3
SF4
1_555
A
SF4
300
C
S2
SF4
1_555
113.2
A
SF4
300
C
S1
SF4
1_555
A
SF4
300
C
FE3
SF4
1_555
A
SF4
300
C
S2
SF4
1_555
108.1
A
HIS
199
A
ND1
HIS
199
1_555
A
SF4
300
C
FE3
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
126.3
A
SF4
300
C
S1
SF4
1_555
A
SF4
300
C
FE3
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
98.9
A
SF4
300
C
S2
SF4
1_555
A
SF4
300
C
FE3
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
99.6
A
CYS
202
A
SG
CYS
202
1_555
A
SF4
300
C
FE1
SF4
1_555
A
SF4
300
C
S2
SF4
1_555
118.1
A
CYS
202
A
SG
CYS
202
1_555
A
SF4
300
C
FE1
SF4
1_555
A
SF4
300
C
S3
SF4
1_555
111.2
A
SF4
300
C
S2
SF4
1_555
A
SF4
300
C
FE1
SF4
1_555
A
SF4
300
C
S3
SF4
1_555
107.1
A
CYS
202
A
SG
CYS
202
1_555
A
SF4
300
C
FE1
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
109.7
A
SF4
300
C
S2
SF4
1_555
A
SF4
300
C
FE1
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
105.6
A
SF4
300
C
S3
SF4
1_555
A
SF4
300
C
FE1
SF4
1_555
A
SF4
300
C
S4
SF4
1_555
104.1
A
CYS
208
A
SG
CYS
208
1_555
A
SF4
300
C
FE4
SF4
1_555
A
SF4
300
C
S1
SF4
1_555
111.6
A
CYS
208
A
SG
CYS
208
1_555
A
SF4
300
C
FE4
SF4
1_555
A
SF4
300
C
S2
SF4
1_555
113.3
A
SF4
300
C
S1
SF4
1_555
A
SF4
300
C
FE4
SF4
1_555
A
SF4
300
C
S2
SF4
1_555
109.2
A
CYS
208
A
SG
CYS
208
1_555
A
SF4
300
C
FE4
SF4
1_555
A
SF4
300
C
S3
SF4
1_555
120.7
A
SF4
300
C
S1
SF4
1_555
A
SF4
300
C
FE4
SF4
1_555
A
SF4
300
C
S3
SF4
1_555
99.8
A
SF4
300
C
S2
SF4
1_555
A
SF4
300
C
FE4
SF4
1_555
A
SF4
300
C
S3
SF4
1_555
100.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CD
GLN
2
A
CD
GLN
2
0
Y
1
A
NE2
GLN
2
A
NE2
GLN
2
0
Y
1
A
OE1
GLN
5
A
OE1
GLN
5
0
Y
1
A
OD2
ASP
12
A
OD2
ASP
12
0
Y
1
A
CG
ASP
15
A
CG
ASP
15
0
Y
1
A
OD1
ASP
15
A
OD1
ASP
15
0
Y
1
A
OD2
ASP
15
A
OD2
ASP
15
0
Y
1
A
CD
LYS
16
A
CD
LYS
16
0
Y
1
A
CE
LYS
16
A
CE
LYS
16
0
Y
1
A
NZ
LYS
16
A
NZ
LYS
16
0
Y
1
A
OD2
ASP
27
A
OD2
ASP
27
0
Y
1
A
NE2
GLN
41
A
NE2
GLN
41
0
Y
1
A
OE1
GLN
42
A
OE1
GLN
42
0
Y
1
A
CD
GLN
44
A
CD
GLN
44
0
Y
1
A
NE2
GLN
44
A
NE2
GLN
44
0
Y
1
A
CD
GLU
53
A
CD
GLU
53
0
Y
1
A
CD
GLU
72
A
CD
GLU
72
0
Y
1
A
CD
GLU
109
A
CD
GLU
109
0
Y
1
A
OD1
ASN
140
A
OD1
ASN
140
0
Y
1
A
C
GLY
156
A
C
GLY
156
0
Y
1
A
CD
LYS
157
A
CD
LYS
157
0
Y
1
A
CE
LYS
157
A
CE
LYS
157
0
Y
1
A
NZ
LYS
157
A
NZ
LYS
157
0
Y
1
A
CD
LYS
158
A
CD
LYS
158
0
Y
1
A
CE
LYS
158
A
CE
LYS
158
0
Y
1
A
NZ
LYS
158
A
NZ
LYS
158
0
Y
1
A
CD
GLU
159
A
CD
GLU
159
0
Y
1
A
OE1
GLU
159
A
OE1
GLU
159
0
Y
1
A
OE2
GLU
159
A
OE2
GLU
159
0
Y
1
A
OE2
GLU
161
A
OE2
GLU
161
0
Y
1
A
CG
ASN
162
A
CG
ASN
162
0
Y
1
A
OG
SER
166
A
OG
SER
166
0
Y
1
A
CD
GLU
169
A
CD
GLU
169
0
Y
1
A
NE
ARG
194
A
NE
ARG
194
0
Y
1
A
CZ
ARG
194
A
CZ
ARG
194
0
Y
1
A
NH1
ARG
194
A
NH1
ARG
194
0
Y
1
A
NH2
ARG
194
A
NH2
ARG
194
0
Y
1
A
CD
LYS
196
A
CD
LYS
196
0
Y
1
A
CE
LYS
196
A
CE
LYS
196
0
Y
1
A
NZ
LYS
196
A
NZ
LYS
196
0
Y
1
A
CE
LYS
198
A
CE
LYS
198
0
Y
1
A
NZ
LYS
198
A
NZ
LYS
198
0
Y
1
A
OD1
ASN
214
A
OD1
ASN
214
0
Y
1
A
ND2
ASN
214
A
ND2
ASN
214
0
Y
1
A
CD
LYS
222
A
CD
LYS
222
0
Y
1
A
CE
LYS
222
A
CE
LYS
222
0
Y
1
A
NZ
LYS
222
A
NZ
LYS
222
0
Y
1
A
CD
LYS
223
A
CD
LYS
223
0
Y
1
A
CE
LYS
223
A
CE
LYS
223
0
Y
1
A
NZ
LYS
223
A
NZ
LYS
223
0
Y
1
A
LEU
137
-155.59
70.29
1
A
PRO
155
-58.52
-9.24
1
A
ILE
191
-109.31
-63.09
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER_REP.TOP
ION.PARAM
ION.TOP
FS4.PARAM
FS4.TOP
CRY.PARAM
CRY.TOP
15.7
-0.50
0.00
0.58
-0.97
0.00
1.46
0.208
0.006
0.191
1.70
29.65
1331
27232
27232
4.9
99.9
RANDOM
1177284.61
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1MUY
Engh & Huber
FLAT MODEL
74.4346
0.396963
0.20
0.18
5.00
0.10
0.11
1.70
29.65
232
2028
31
0
1765
0.006
1.1
19.7
0.85
0.241
0.015
0.231
1.81
242
4251
6
5.4
99.4
15.3
1.7
29.65
1KQJ
27245
27245
0
-3
0.086
1
17.60
4.300
99.9
1.70
1.76
2.600
0.505
1
4.05
99.40
model building
X-PLOR
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
Crystal Structure of a Mutant of MutY Catalytic Domain
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
A
GLN
2
A
GLN
2
HELX_P
A
GLY
18
A
GLY
18
1
1
17
A
LEU
22
A
LEU
22
HELX_P
A
ILE
26
A
ILE
26
5
2
5
A
THR
29
A
THR
29
HELX_P
A
GLN
41
A
GLN
41
1
3
13
A
GLN
44
A
GLN
44
HELX_P
A
PHE
59
A
PHE
59
1
4
16
A
THR
61
A
THR
61
HELX_P
A
ALA
68
A
ALA
68
1
5
8
A
PRO
69
A
PRO
69
HELX_P
A
THR
78
A
THR
78
1
6
10
A
TYR
83
A
TYR
83
HELX_P
A
HIS
100
A
HIS
100
1
7
18
A
THR
107
A
THR
107
HELX_P
A
ALA
113
A
ALA
113
1
8
7
A
GLY
118
A
GLY
118
HELX_P
A
GLY
131
A
GLY
131
1
9
14
A
ASP
138
A
ASP
138
HELX_P
A
TYR
149
A
TYR
149
1
10
12
A
LYS
157
A
LYS
157
HELX_P
A
THR
172
A
THR
172
1
11
16
A
GLY
176
A
GLY
176
HELX_P
A
ILE
191
A
ILE
191
1
12
16
A
LYS
198
A
LYS
198
HELX_P
A
CYS
202
A
CYS
202
5
13
5
A
CYS
208
A
CYS
208
HELX_P
A
ASN
214
A
ASN
214
1
14
7
A
SER
215
A
SER
215
HELX_P
A
TYR
219
A
TYR
219
5
15
5
metalc
2.425
A
CYS
192
A
SG
CYS
192
1_555
A
SF4
300
C
FE2
SF4
1_555
metalc
2.192
A
HIS
199
A
ND1
HIS
199
1_555
A
SF4
300
C
FE3
SF4
1_555
metalc
2.393
A
CYS
202
A
SG
CYS
202
1_555
A
SF4
300
C
FE1
SF4
1_555
metalc
2.370
A
CYS
208
A
SG
CYS
208
1_555
A
SF4
300
C
FE4
SF4
1_555
HYDROLASE
all alpha-helix, two lobes, N-terminus contains Helix-hinge-Helix (HhH) and C-terminal domain contains iron sulfur cluster, HYDROLASE
A
TYR
219
A
TYR
219
1
A
PRO
220
A
PRO
220
-0.46
MUTY_ECOLI
UNP
1
1
P17802
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGL
GYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK
1
225
1KQJ
1
225
P17802
A
1
1
225
1
CYS
engineered mutation
HIS
199
1KQJ
A
P17802
UNP
199
199
BINDING SITE FOR RESIDUE SO4 A 301
A
SO4
301
Software
4
BINDING SITE FOR RESIDUE SF4 A 300
A
SF4
300
Software
4
BINDING SITE FOR RESIDUE GOL A 302
A
GOL
302
Software
8
BINDING SITE FOR RESIDUE GOL A 303
A
GOL
303
Software
7
BINDING SITE FOR RESIDUE GOL A 304
A
GOL
304
Software
4
A
PRO
69
A
PRO
69
4
1_555
A
LEU
70
A
LEU
70
4
1_555
A
HOH
427
G
HOH
4
1_555
A
HOH
603
G
HOH
4
3_445
A
CYS
192
A
CYS
192
4
1_555
A
HIS
199
A
HIS
199
4
1_555
A
CYS
202
A
CYS
202
4
1_555
A
CYS
208
A
CYS
208
4
1_555
A
GLN
42
A
GLN
42
8
4_546
A
THR
43
A
THR
43
8
4_546
A
ARG
58
A
ARG
58
8
1_555
A
ASP
64
A
ASP
64
8
1_555
A
GLY
79
A
GLY
79
8
4_546
A
LEU
80
A
LEU
80
8
4_546
A
GLY
81
A
GLY
81
8
4_546
A
HOH
538
G
HOH
8
4_546
A
TYR
31
A
TYR
31
7
1_555
A
THR
61
A
THR
61
7
1_555
A
VAL
62
A
VAL
62
7
1_555
A
LYS
103
A
LYS
103
7
1_555
A
PHE
104
A
PHE
104
7
1_555
A
HOH
444
G
HOH
7
1_555
A
HOH
466
G
HOH
7
1_555
A
ARG
87
A
ARG
87
4
1_555
A
ASN
88
A
ASN
88
4
1_555
A
LYS
91
A
LYS
91
4
1_555
A
HOH
467
G
HOH
4
1_555
5
C 1 2 1