1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Banci, L. Bertini, I. Ciofi-Baffoni, S. D'Onofrio, M. Gonnelli, L. Marhuenda-Egea, F.C. Ruiz-Duenas, F.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cu 1 63.546 COPPER (I) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 317 415 429 10.1006/jmbi.2002.5430 11922674 Solution structure of the N-terminal domain of a potential copper-translocating P-type ATPase from Bacillus subtilis in the apo and Cu(I) loaded states. 2002 10.2210/pdb1kqk/pdb pdb_00001kqk 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 8832.031 POTENTIAL COPPER-TRANSPORTING ATPASE 3.6.3.4 N-terminal domain 1 man polymer 63.546 COPPER (I) ION 1 syn non-polymer P-type ATPase, CopA no no MTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDSIEGR MTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDSIEGR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus Escherichia sample yvgX 1423 Bacillus subtilis 562 Escherichia coli BL21 (DE3)pLysS plasmid pET21a database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-04-17 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1JWW contains the same protein in the apo form. RCSB Y RCSB 2002-01-07 REL CU1 COPPER (I) ION This structure was determined using standard 2D homonuclear and 3D heteronuclear techniques target function 300 30 HNHA 3D 15N NOESY-HSQC 2D NOESY 2D TOCSY 100mM phosphate buffer Na 7 ambient 298 K the structures are based on a total of 1502 restraints, 1415 are NOE-derived distance constraints, 87 dihedral angle restraints torsion angle dynamics 2mM Cu(I)CopA 15N; 100mM phosphate buffer Na; 90%H2O, 10%D2O 90% H2O/10% D2O Borgias, B.; Thomas, P.D.; James, T.L. iterative matrix relaxation CORMA Guentert, P.; Mumenthaler, C.; Wuthrich, K. structure solution DYANA 1.5 Bartels, C.; Xia, T.H.; Billeter, M.; Guentert, P.; Wuthrich, K. data analysis XEASY 3.2 Pearlman, D.A.; Case, D.A.; Caldwell, J.W.; Ross, W.S.; Cheatham, T.E.; Ferguson, D.M.; Seibel, G.L.; Singh, U.C.; Weiner, P.K.; Kollman, P.A. refinement Amber 5.0 collection XwinNMR 2.6 processing XwinNMR 2.6 700 Bruker AVANCE CU 81 2 CU1 CU1 81 A MET 1 n 1 MET 1 A THR 2 n 2 THR 2 A GLU 3 n 3 GLU 3 A LYS 4 n 4 LYS 4 A ALA 5 n 5 ALA 5 A GLU 6 n 6 GLU 6 A PHE 7 n 7 PHE 7 A ASP 8 n 8 ASP 8 A ILE 9 n 9 ILE 9 A GLU 10 n 10 GLU 10 A GLY 11 n 11 GLY 11 A MET 12 n 12 MET 12 A THR 13 n 13 THR 13 A CYS 14 n 14 CYS 14 A ALA 15 n 15 ALA 15 A ALA 16 n 16 ALA 16 A CYS 17 n 17 CYS 17 A ALA 18 n 18 ALA 18 A ASN 19 n 19 ASN 19 A ARG 20 n 20 ARG 20 A ILE 21 n 21 ILE 21 A GLU 22 n 22 GLU 22 A LYS 23 n 23 LYS 23 A ARG 24 n 24 ARG 24 A LEU 25 n 25 LEU 25 A ASN 26 n 26 ASN 26 A LYS 27 n 27 LYS 27 A ILE 28 n 28 ILE 28 A GLU 29 n 29 GLU 29 A GLY 30 n 30 GLY 30 A VAL 31 n 31 VAL 31 A ALA 32 n 32 ALA 32 A ASN 33 n 33 ASN 33 A ALA 34 n 34 ALA 34 A PRO 35 n 35 PRO 35 A VAL 36 n 36 VAL 36 A ASN 37 n 37 ASN 37 A PHE 38 n 38 PHE 38 A ALA 39 n 39 ALA 39 A LEU 40 n 40 LEU 40 A GLU 41 n 41 GLU 41 A THR 42 n 42 THR 42 A VAL 43 n 43 VAL 43 A THR 44 n 44 THR 44 A VAL 45 n 45 VAL 45 A GLU 46 n 46 GLU 46 A TYR 47 n 47 TYR 47 A ASN 48 n 48 ASN 48 A PRO 49 n 49 PRO 49 A LYS 50 n 50 LYS 50 A GLU 51 n 51 GLU 51 A ALA 52 n 52 ALA 52 A SER 53 n 53 SER 53 A VAL 54 n 54 VAL 54 A SER 55 n 55 SER 55 A ASP 56 n 56 ASP 56 A LEU 57 n 57 LEU 57 A LYS 58 n 58 LYS 58 A GLU 59 n 59 GLU 59 A ALA 60 n 60 ALA 60 A VAL 61 n 61 VAL 61 A ASP 62 n 62 ASP 62 A LYS 63 n 63 LYS 63 A LEU 64 n 64 LEU 64 A GLY 65 n 65 GLY 65 A TYR 66 n 66 TYR 66 A LYS 67 n 67 LYS 67 A LEU 68 n 68 LEU 68 A LYS 69 n 69 LYS 69 A LEU 70 n 70 LEU 70 A LYS 71 n 71 LYS 71 A GLY 72 n 72 GLY 72 A GLU 73 n 73 GLU 73 A GLN 74 n 74 GLN 74 A ASP 75 n 75 ASP 75 A SER 76 n 76 SER 76 A ILE 77 n 77 ILE 77 A GLU 78 n 78 GLU 78 A GLY 79 n 79 GLY 79 A ARG 80 n 80 ARG 80 A author_defined_assembly 1 monomeric A CYS 14 A SG CYS 14 1_555 A CU1 81 B CU CU1 1_555 A CYS 17 A SG CYS 17 1_555 117.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 45 A O VAL 45 A N ALA 5 A N ALA 5 5 A A SG SG CYS CYS 14 17 1.82 10 A A SG SG CYS CYS 14 17 2.14 17 A A SG SG CYS CYS 14 17 2.00 19 A A SG SG CYS CYS 14 17 1.66 1 A ARG 20 0.114 SIDE CHAIN 4 A TYR 47 0.069 SIDE CHAIN 4 A TYR 66 0.104 SIDE CHAIN 5 A TYR 47 0.063 SIDE CHAIN 7 A TYR 66 0.107 SIDE CHAIN 9 A TYR 47 0.091 SIDE CHAIN 10 A TYR 47 0.104 SIDE CHAIN 12 A TYR 47 0.066 SIDE CHAIN 13 A TYR 47 0.084 SIDE CHAIN 14 A TYR 66 0.093 SIDE CHAIN 15 A TYR 66 0.086 SIDE CHAIN 15 A ARG 80 0.100 SIDE CHAIN 16 A TYR 47 0.088 SIDE CHAIN 18 A ARG 20 0.088 SIDE CHAIN 18 A TYR 47 0.110 SIDE CHAIN 18 A TYR 66 0.076 SIDE CHAIN 19 A TYR 47 0.072 SIDE CHAIN 19 A TYR 66 0.094 SIDE CHAIN 20 A TYR 47 0.062 SIDE CHAIN 22 A TYR 66 0.082 SIDE CHAIN 25 A TYR 47 0.091 SIDE CHAIN 25 A TYR 66 0.094 SIDE CHAIN 26 A TYR 47 0.068 SIDE CHAIN 26 A ARG 80 0.118 SIDE CHAIN 28 A TYR 47 0.069 SIDE CHAIN 29 A TYR 47 0.070 SIDE CHAIN 30 A TYR 47 0.070 SIDE CHAIN 26 -3.07 0.50 120.30 117.23 A A A NE CZ NH2 ARG ARG ARG 80 80 80 N 1 A THR 2 54.41 -177.11 1 A ALA 34 -179.23 61.13 1 A ALA 39 -159.64 -57.38 1 A LYS 50 -144.94 -60.08 1 A GLU 73 -166.16 31.94 1 A GLN 74 -159.11 54.38 1 A ILE 77 71.05 -68.24 1 A GLU 78 65.37 155.70 2 A MET 12 32.80 73.23 2 A ALA 34 -172.28 59.94 2 A ALA 39 -138.95 -55.93 2 A LYS 50 -136.30 -56.65 2 A LYS 71 -125.47 -146.92 2 A GLN 74 52.06 72.97 2 A ILE 77 -161.40 90.90 3 A MET 12 -82.63 45.08 3 A CYS 14 -156.10 -30.29 3 A ALA 15 74.88 -55.73 3 A ALA 34 -178.79 67.55 3 A ALA 39 -160.57 -60.96 3 A LYS 50 -154.67 -19.15 3 A LYS 71 -127.10 -51.73 3 A SER 76 -88.61 -73.40 3 A ILE 77 54.48 80.29 4 A MET 12 21.56 59.37 4 A ALA 34 -169.29 55.09 4 A ALA 39 -154.18 -49.95 4 A GLU 41 81.58 49.91 4 A LYS 50 -135.65 -55.63 4 A LYS 71 -124.49 -51.55 4 A GLU 73 -165.53 40.14 4 A GLN 74 -162.06 54.11 5 A ALA 34 -175.62 57.18 5 A ALA 39 -167.62 -55.74 5 A GLU 51 -141.25 -67.22 5 A LYS 71 -131.08 -51.07 5 A GLN 74 177.16 -47.29 5 A ASP 75 77.91 -59.88 5 A ILE 77 -131.45 -84.75 5 A GLU 78 -168.93 -97.78 6 A MET 12 33.56 64.53 6 A ALA 34 -169.65 56.91 6 A ALA 39 -159.16 -55.30 6 A GLU 51 -137.09 -61.38 6 A LYS 63 -69.46 10.11 6 A LYS 71 -121.24 -53.90 6 A GLN 74 68.19 123.25 6 A ILE 77 -45.73 105.87 7 A THR 2 66.77 172.14 7 A MET 12 30.71 57.56 7 A ALA 34 -167.55 54.23 7 A ALA 39 -179.36 -61.33 7 A GLU 41 60.55 68.76 7 A GLU 51 -130.62 -61.95 7 A LYS 71 -120.37 -72.34 7 A GLU 73 -173.89 50.02 7 A ASP 75 170.21 -64.12 7 A SER 76 -137.65 -44.75 8 A THR 2 57.54 -166.38 8 A CYS 14 -144.99 -89.03 8 A ALA 15 145.97 -56.21 8 A ALA 34 -176.65 61.68 8 A ALA 39 -159.91 -57.88 8 A PRO 49 -77.14 42.73 8 A LYS 50 -142.86 -3.62 8 A GLU 51 -130.47 -57.80 8 A ASP 75 6.28 78.45 8 A SER 76 -155.68 -61.99 9 A THR 2 -111.31 -108.68 9 A ALA 34 -168.05 57.45 9 A ALA 39 -164.54 -56.25 9 A GLU 41 71.15 55.60 9 A LYS 50 -150.35 -0.69 9 A GLU 51 -129.21 -74.12 9 A SER 76 -171.89 66.50 10 A ALA 34 -169.19 58.90 10 A ALA 39 -161.56 -54.58 10 A LYS 50 -150.12 18.65 10 A GLU 51 -146.14 -68.26 10 A LYS 71 -133.49 -34.54 10 A GLU 73 -156.60 45.75 10 A SER 76 -171.30 76.91 11 A GLU 3 -107.59 -165.64 11 A MET 12 33.63 67.97 11 A ALA 34 -167.76 54.37 11 A ALA 39 176.07 -41.79 11 A LYS 50 -157.34 -59.34 11 A LYS 71 -120.58 -53.86 11 A GLU 73 -161.74 37.54 11 A GLN 74 -150.96 47.93 11 A ILE 77 63.55 175.64 11 A GLU 78 65.42 -173.68 12 A ALA 34 -170.83 57.29 12 A ALA 39 -160.51 -54.11 12 A GLU 41 71.00 45.47 12 A LYS 50 -153.58 17.36 12 A GLU 51 -145.24 -59.62 12 A LYS 71 -122.00 -51.66 12 A GLN 74 -175.70 66.70 12 A ASP 75 30.55 64.73 12 A GLU 78 -64.74 93.59 13 A THR 2 -98.34 -122.86 13 A ALA 34 -140.58 56.06 13 A ALA 39 -165.19 -50.59 13 A LYS 50 -156.26 23.71 13 A GLU 51 -141.24 -63.93 13 A LYS 71 -125.80 -54.00 13 A GLU 73 66.12 -27.02 13 A GLN 74 -61.64 81.16 13 A ASP 75 -168.11 118.09 14 A THR 2 58.01 -179.86 14 A ALA 34 -169.81 58.25 14 A PHE 38 -101.90 65.57 14 A ALA 39 -161.33 -53.85 14 A GLU 51 -140.90 -56.38 14 A LYS 71 -129.34 -133.26 14 A GLU 73 71.99 -123.72 14 A ASP 75 39.08 54.17 14 A SER 76 -131.44 -56.35 14 A ILE 77 68.38 85.63 15 A THR 2 63.59 153.35 15 A MET 12 25.14 64.22 15 A ALA 34 -164.54 57.13 15 A ALA 39 -154.53 -51.53 15 A GLU 41 70.54 52.65 15 A LYS 50 -142.25 -58.92 15 A LYS 71 -132.23 -52.84 15 A GLU 73 -97.38 -66.35 15 A ASP 75 -179.90 -81.66 15 A SER 76 -167.62 -48.84 15 A ILE 77 25.83 67.57 16 A MET 12 30.00 70.23 16 A ALA 34 -175.11 59.53 16 A ALA 39 -151.14 -40.52 16 A PRO 49 -77.89 46.62 16 A LYS 50 -156.02 6.20 16 A GLU 51 -132.75 -73.99 16 A LYS 71 -132.11 -52.21 16 A GLU 73 -142.30 -73.03 16 A GLN 74 61.25 60.74 16 A ILE 77 38.65 69.90 17 A ALA 34 -161.92 55.82 17 A ALA 39 -159.80 -54.45 17 A GLU 41 77.41 51.19 17 A GLU 51 -125.16 -69.55 17 A GLU 73 -160.74 42.98 17 A GLN 74 -164.86 73.92 17 A ASP 75 -69.23 74.82 17 A SER 76 -161.63 -75.31 18 A MET 12 22.78 70.28 18 A ALA 34 -167.77 60.69 18 A ALA 39 -157.62 -53.59 18 A LYS 50 -151.74 -55.68 18 A ASP 75 21.34 79.29 18 A SER 76 -157.28 63.39 19 A GLU 3 -116.17 -164.50 19 A ALA 15 70.43 -60.37 19 A ALA 34 -174.43 58.63 19 A PHE 38 -63.88 83.70 19 A ALA 39 174.11 -49.49 19 A LYS 50 -148.96 -51.65 19 A LYS 71 -128.70 -56.16 19 A GLU 73 63.81 -78.21 19 A GLN 74 -156.19 -51.76 19 A ASP 75 37.07 78.29 19 A GLU 78 69.49 132.38 20 A ALA 34 -165.80 58.31 20 A ALA 39 -157.89 -54.44 20 A LYS 50 -150.19 11.71 20 A GLU 51 -148.46 -65.91 20 A LYS 63 -58.28 -9.09 20 A LYS 71 -141.41 32.42 20 A GLN 74 117.84 103.81 20 A ASP 75 -65.61 71.17 20 A SER 76 -164.26 53.80 20 A ILE 77 77.48 117.48 20 A GLU 78 -132.72 -68.36 21 A MET 12 -69.68 84.77 21 A ALA 34 -166.35 55.12 21 A ALA 39 -158.59 -51.46 21 A LYS 50 -150.40 17.32 21 A GLU 51 -145.31 -67.82 21 A GLN 74 82.67 71.88 21 A GLU 78 -174.87 -54.89 22 A THR 2 68.48 150.22 22 A MET 12 -24.39 91.31 22 A ALA 34 -169.06 55.84 22 A ALA 39 -163.92 -38.00 22 A LYS 50 -149.85 -52.81 22 A GLN 74 59.48 90.59 22 A SER 76 -155.87 74.09 23 A ALA 34 -165.21 54.14 23 A ALA 39 -161.82 -57.46 23 A LYS 50 -134.19 -57.86 23 A ASP 75 72.63 78.55 23 A SER 76 64.24 70.31 23 A ILE 77 38.41 -144.83 24 A MET 12 -27.52 91.18 24 A ALA 34 -170.62 65.14 24 A ALA 39 -144.77 -41.14 24 A LYS 50 -136.98 -51.77 24 A LYS 71 -138.21 -149.18 24 A GLN 74 62.44 106.31 24 A SER 76 -129.90 -52.42 24 A ILE 77 -147.28 51.69 25 A THR 2 52.55 -169.62 25 A ALA 34 -172.02 54.28 25 A ALA 39 -160.66 -55.50 25 A LYS 50 -155.47 11.26 25 A GLU 51 -133.71 -62.42 25 A ASP 75 17.59 59.51 25 A ILE 77 -1.99 -82.22 25 A GLU 78 -165.61 -64.33 26 A MET 12 29.57 78.13 26 A ALA 34 -171.89 62.66 26 A ALA 39 -146.33 -63.71 26 A GLU 41 70.38 56.80 26 A LYS 50 -150.74 -58.45 26 A GLN 74 -161.39 85.46 26 A ASP 75 -75.50 43.09 26 A SER 76 -172.61 91.56 26 A ILE 77 -161.67 -53.62 27 A MET 12 40.59 -90.99 27 A THR 13 78.23 -47.09 27 A ALA 34 -168.16 58.71 27 A ALA 39 -160.83 -60.61 27 A GLU 41 66.16 61.32 27 A LYS 50 -159.33 6.97 27 A GLU 51 -135.72 -61.45 27 A LYS 71 -124.01 -54.19 27 A GLU 73 -155.57 54.58 27 A SER 76 -177.87 87.50 27 A ILE 77 -118.50 78.05 28 A MET 12 66.71 -61.17 28 A THR 13 78.20 -57.58 28 A ALA 34 -167.39 54.43 28 A ALA 39 -164.11 -33.98 28 A LYS 50 -145.94 -1.85 28 A GLU 51 -134.28 -67.11 28 A GLU 73 -140.08 47.59 28 A ILE 77 72.02 111.24 29 A THR 2 169.15 179.48 29 A ALA 34 -176.96 61.88 29 A ALA 39 -158.23 -51.18 29 A LYS 50 -147.27 -54.40 29 A GLN 74 53.83 80.13 29 A ILE 77 56.31 77.34 30 A THR 2 169.15 179.48 30 A ALA 34 -176.96 61.88 30 A ALA 39 -158.23 -51.18 30 A LYS 50 -147.27 -54.40 30 A GLN 74 53.83 80.13 30 A ILE 77 56.31 77.34 Solution Structure of the N-terminal Domain of a Potential Copper-translocating P-type ATPase from Bacillus subtilis in the Cu(I)loaded State 1 N N 2 N N A ALA 15 A ALA 15 HELX_P A LYS 27 A LYS 27 1 1 13 A SER 53 A SER 53 HELX_P A LYS 63 A LYS 63 1 2 11 metalc 2.169 A CYS 14 A SG CYS 14 1_555 A CU1 81 B CU CU1 1_555 metalc 2.178 A CYS 17 A SG CYS 17 1_555 A CU1 81 B CU CU1 1_555 HYDROLASE CopA, folding, P-type ATPase, copper transporting protein, HYDROLASE COPA_BACSU UNP 1 73 O32220 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDS 73 147 1KQK 2 76 O32220 A 1 2 76 1 initiating methionine MET 1 1KQK A O32220 UNP 1 1 SEE REMARK 999 ILE 77 1KQK A O32220 UNP 77 1 SEE REMARK 999 GLU 78 1KQK A O32220 UNP 78 1 SEE REMARK 999 GLY 79 1KQK A O32220 UNP 79 1 SEE REMARK 999 ARG 80 1KQK A O32220 UNP 80 1 2 1 1 anti-parallel A GLU 3 A GLU 3 A GLU 10 A GLU 10 A GLY 30 A GLY 30 A ASN 33 A ASN 33 A VAL 36 A VAL 36 A ASN 37 A ASN 37 A GLU 41 A GLU 41 A ASN 48 A ASN 48 A LYS 67 A LYS 67 A GLU 73 A GLU 73 BINDING SITE FOR RESIDUE CU1 A 81 A CU1 81 Software 2 A CYS 14 A CYS 14 2 1_555 A CYS 17 A CYS 17 2 1_555