.020822 .000000 .000000 .000000 .020822 .000000 .000000 .000000 .007668 .00000 .00000 .00000 Dormitzer, P.R. Sun, Z.-Y.J. Wagner, G. Harrison, S.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 48.027 48.027 130.404 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C12 H21 N O9 323.296 n 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid 2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID D-saccharide C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N C N 138 N O N 139 N C N 140 N O N 141 N C N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C Y 156 N C Y 157 N N Y 158 N C Y 159 N C Y 160 N N N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N O N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 S C N 180 N C N 181 N C N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C N 202 N C N 203 N C N 204 N C N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 N C N 224 N C N 225 N C N 226 N C N 227 N N N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N S N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N C N 265 R C N 266 N C N 267 S C N 268 R C N 269 R C N 270 R C N 271 R C N 272 N C N 273 N C N 274 N C N 275 N C N 276 N N N 277 N O N 278 N O N 279 N O N 280 N O N 281 N O N 282 N O N 283 N O N 284 N O N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C N 335 N C N 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N N N 348 S C N 349 N C N 350 N O N 351 N C N 352 N O N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N S N 362 N O N 363 N O N 364 N O N 365 N O N 366 N N N 367 S C N 368 N C N 369 N O N 370 R C N 371 N O N 372 N C N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C Y 388 N C Y 389 N C Y 390 N C Y 391 N N Y 392 N C Y 393 N C Y 394 N C Y 395 N C Y 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C Y 420 N C N 421 N O N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C N 439 N C N 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing Y 377 N doub Y 378 N sing Y 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N sing Y 386 N doub N 387 N sing Y 388 N doub N 389 N sing Y 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub N 410 N sing Y 411 N doub N 412 N sing Y 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N doub N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing UK Embo J. EMJODG 0897 0261-4189 21 885 897 10.1093/emboj/21.5.885 11867517 The Rhesus Rotavirus VP4 Sialic Acid Binding Domain has a Galectin Fold with a Novel Carbohydrate Binding Site 2002 US J.Virol. JOVIAM 0825 0022-538X 75 7339 7350 10.1128/JVI.75.16.7339-7350.2001 Proteolysis of Monomeric Recombinant Rotavirus VP4 Yields an Oligomeric VP5* Core 2001 10.2210/pdb1kqr/pdb pdb_00001kqr 1.000000 .000000 .000000 .000000 1.000000 .000000 .000000 .000000 1.000000 .00000 .00000 .00000 100 1 mirror CCD 2001-03-02 ADSC QUANTUM 4 bent G3(III) single crystal SINGLE WAVELENGTH M x-ray 1 1.0 1.0 14-BM-C APS 1.0 SYNCHROTRON APS BEAMLINE 14-BM-C 20220.279 VP4 sialic acid binding domain (residues 62-224) 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 323.296 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 190 nat water no no GSPEFPGRENLYFQGREPVLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQ EQITIANASQTQWKFIDVVKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDF YIIPREEESTCTEYINNGL GSPEFPGRENLYFQGREPVLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQ EQITIANASQTQWKFIDVVKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDF YIIPREEESTCTEYINNGL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rotavirus Rotavirus A Escherichia Escherichia coli sample segment 4 10969 Rhesus rotavirus 469008 Escherichia coli BL21(DE3) BL21 DE3 plasmid pGex-VP8(62-224) 2 1.84 25.2 VAPOR DIFFUSION, HANGING DROP 6.5 ammonium sulfate, PEG 400, NaCl, NaPO4, Pipes, Tris, 2-O-methyl-alpha-D-N-acetyl neuraminic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K 303 chem_comp entity pdbx_chem_comp_identifier pdbx_database_remark pdbx_entity_nonpoly struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Advisory Data collection Database references Derived calculations Structure summary Data collection Database references Structure summary 1 0 2002-03-27 1 1 2008-04-27 1 2 2011-07-13 1 3 2020-07-29 1 4 2024-02-14 _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_database_remark.text _pdbx_entity_nonpoly.name _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession 2-O-methyl-5-N-acetyl-a-D-neuraminic acid NMR solution structures of the rhesus rotavirus VP4 sialic acid binding domain without ligand The 8 to 16 residue amino terminal linker and residues E62 to V64 of VP4 are disordered and are not included in the model. Alternate conformations are modeled for residues Q70, M82, I106, S118, T124, Q125, I141, V143, S151, Y155, G156, P157, Q159, K163, V167, N171, N178, E180, K187, E212, S214, and N222. The G156-P157 peptide bond has alternate cis and trans conformations. The model contains two apparent close contacts: the N222 side chain with HOH 2187 and the G156 carbonyl with HOH 2190. In each case, the residue has alternate conformations, and the water molecule has partial occupancy, so that clashes are avoided. The electron density for the K187 side chain is ambiguous beyond CB. A well-defined volume of high electron density near K187 is modeled with NZ of K187 conformation B. The low B-factor of this atom (2.63) indicates that, in another conformation, this density is occupied by another atom, possibly an ion, which has not been modeled. sheet determination method: author RCSB Y RCSB 2002-01-07 REL REL SO4 SULFATE ION MNA 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid GOL GLYCEROL HOH water SO4 3000 2 SO4 SO4 3000 A MNA 1000 3 MNA MNA 1000 A GOL 4000 4 GOL GOL 4000 A HOH 2000 5 HOH HOH 2000 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A HOH 2019 5 HOH HOH 2019 A HOH 2020 5 HOH HOH 2020 A HOH 2021 5 HOH HOH 2021 A HOH 2022 5 HOH HOH 2022 A HOH 2023 5 HOH HOH 2023 A HOH 2024 5 HOH HOH 2024 A HOH 2025 5 HOH HOH 2025 A HOH 2027 5 HOH HOH 2027 A HOH 2028 5 HOH HOH 2028 A HOH 2029 5 HOH HOH 2029 A HOH 2030 5 HOH HOH 2030 A HOH 2031 5 HOH HOH 2031 A HOH 2032 5 HOH HOH 2032 A HOH 2033 5 HOH HOH 2033 A HOH 2034 5 HOH HOH 2034 A HOH 2035 5 HOH HOH 2035 A HOH 2036 5 HOH HOH 2036 A HOH 2037 5 HOH HOH 2037 A HOH 2038 5 HOH HOH 2038 A HOH 2039 5 HOH HOH 2039 A HOH 2040 5 HOH HOH 2040 A HOH 2041 5 HOH HOH 2041 A HOH 2042 5 HOH HOH 2042 A HOH 2043 5 HOH HOH 2043 A HOH 2044 5 HOH HOH 2044 A HOH 2045 5 HOH HOH 2045 A HOH 2046 5 HOH HOH 2046 A HOH 2047 5 HOH HOH 2047 A HOH 2048 5 HOH HOH 2048 A HOH 2049 5 HOH HOH 2049 A HOH 2050 5 HOH HOH 2050 A HOH 2051 5 HOH HOH 2051 A HOH 2052 5 HOH HOH 2052 A HOH 2053 5 HOH HOH 2053 A HOH 2054 5 HOH HOH 2054 A HOH 2055 5 HOH HOH 2055 A HOH 2056 5 HOH HOH 2056 A HOH 2057 5 HOH HOH 2057 A HOH 2058 5 HOH HOH 2058 A HOH 2059 5 HOH HOH 2059 A HOH 2060 5 HOH HOH 2060 A HOH 2061 5 HOH HOH 2061 A HOH 2062 5 HOH HOH 2062 A HOH 2063 5 HOH HOH 2063 A HOH 2064 5 HOH HOH 2064 A HOH 2065 5 HOH HOH 2065 A HOH 2066 5 HOH HOH 2066 A HOH 2067 5 HOH HOH 2067 A HOH 2068 5 HOH HOH 2068 A HOH 2069 5 HOH HOH 2069 A HOH 2070 5 HOH HOH 2070 A HOH 2071 5 HOH HOH 2071 A HOH 2072 5 HOH HOH 2072 A HOH 2073 5 HOH HOH 2073 A HOH 2074 5 HOH HOH 2074 A HOH 2075 5 HOH HOH 2075 A HOH 2076 5 HOH HOH 2076 A HOH 2077 5 HOH HOH 2077 A HOH 2078 5 HOH HOH 2078 A HOH 2079 5 HOH HOH 2079 A HOH 2080 5 HOH HOH 2080 A HOH 2081 5 HOH HOH 2081 A HOH 2082 5 HOH HOH 2082 A HOH 2083 5 HOH HOH 2083 A HOH 2084 5 HOH HOH 2084 A HOH 2085 5 HOH HOH 2085 A HOH 2086 5 HOH HOH 2086 A HOH 2087 5 HOH HOH 2087 A HOH 2088 5 HOH HOH 2088 A HOH 2089 5 HOH HOH 2089 A HOH 2090 5 HOH HOH 2090 A HOH 2091 5 HOH HOH 2091 A HOH 2092 5 HOH HOH 2092 A HOH 2093 5 HOH HOH 2093 A HOH 2094 5 HOH HOH 2094 A HOH 2095 5 HOH HOH 2095 A HOH 2096 5 HOH HOH 2096 A HOH 2097 5 HOH HOH 2097 A HOH 2098 5 HOH HOH 2098 A HOH 2099 5 HOH HOH 2099 A HOH 2100 5 HOH HOH 2100 A HOH 2101 5 HOH HOH 2101 A HOH 2102 5 HOH HOH 2102 A HOH 2103 5 HOH HOH 2103 A HOH 2104 5 HOH HOH 2104 A HOH 2105 5 HOH HOH 2105 A HOH 2106 5 HOH HOH 2106 A HOH 2107 5 HOH HOH 2107 A HOH 2108 5 HOH HOH 2108 A HOH 2109 5 HOH HOH 2109 A HOH 2110 5 HOH HOH 2110 A HOH 2111 5 HOH HOH 2111 A HOH 2112 5 HOH HOH 2112 A HOH 2113 5 HOH HOH 2113 A HOH 2114 5 HOH HOH 2114 A HOH 2115 5 HOH HOH 2115 A HOH 2116 5 HOH HOH 2116 A HOH 2117 5 HOH HOH 2117 A HOH 2118 5 HOH HOH 2118 A HOH 2119 5 HOH HOH 2119 A HOH 2120 5 HOH HOH 2120 A HOH 2121 5 HOH HOH 2121 A HOH 2122 5 HOH HOH 2122 A HOH 2123 5 HOH HOH 2123 A HOH 2124 5 HOH HOH 2124 A HOH 2125 5 HOH HOH 2125 A HOH 2126 5 HOH HOH 2126 A HOH 2127 5 HOH HOH 2127 A HOH 2128 5 HOH HOH 2128 A HOH 2129 5 HOH HOH 2129 A HOH 2130 5 HOH HOH 2130 A HOH 2131 5 HOH HOH 2131 A HOH 2132 5 HOH HOH 2132 A HOH 2133 5 HOH HOH 2133 A HOH 2134 5 HOH HOH 2134 A HOH 2135 5 HOH HOH 2135 A HOH 2136 5 HOH HOH 2136 A HOH 2137 5 HOH HOH 2137 A HOH 2138 5 HOH HOH 2138 A HOH 2139 5 HOH HOH 2139 A HOH 2140 5 HOH HOH 2140 A HOH 2141 5 HOH HOH 2141 A HOH 2142 5 HOH HOH 2142 A HOH 2143 5 HOH HOH 2143 A HOH 2144 5 HOH HOH 2144 A HOH 2145 5 HOH HOH 2145 A HOH 2146 5 HOH HOH 2146 A HOH 2147 5 HOH HOH 2147 A HOH 2148 5 HOH HOH 2148 A HOH 2149 5 HOH HOH 2149 A HOH 2150 5 HOH HOH 2150 A HOH 2151 5 HOH HOH 2151 A HOH 2152 5 HOH HOH 2152 A HOH 2153 5 HOH HOH 2153 A HOH 2154 5 HOH HOH 2154 A HOH 2155 5 HOH HOH 2155 A HOH 2156 5 HOH HOH 2156 A HOH 2157 5 HOH HOH 2157 A HOH 2158 5 HOH HOH 2158 A HOH 2159 5 HOH HOH 2159 A HOH 2160 5 HOH HOH 2160 A HOH 2161 5 HOH HOH 2161 A HOH 2162 5 HOH HOH 2162 A HOH 2163 5 HOH HOH 2163 A HOH 2164 5 HOH HOH 2164 A HOH 2165 5 HOH HOH 2165 A HOH 2166 5 HOH HOH 2166 A HOH 2167 5 HOH HOH 2167 A HOH 2168 5 HOH HOH 2168 A HOH 2169 5 HOH HOH 2169 A HOH 2170 5 HOH HOH 2170 A HOH 2171 5 HOH HOH 2171 A HOH 2172 5 HOH HOH 2172 A HOH 2173 5 HOH HOH 2173 A HOH 2174 5 HOH HOH 2174 A HOH 2175 5 HOH HOH 2175 A HOH 2176 5 HOH HOH 2176 A HOH 2177 5 HOH HOH 2177 A HOH 2178 5 HOH HOH 2178 A HOH 2179 5 HOH HOH 2179 A HOH 2180 5 HOH HOH 2180 A HOH 2181 5 HOH HOH 2181 A HOH 2182 5 HOH HOH 2182 A HOH 2183 5 HOH HOH 2183 A HOH 2184 5 HOH HOH 2184 A HOH 2185 5 HOH HOH 2185 A HOH 2186 5 HOH HOH 2186 A HOH 2187 5 HOH HOH 2187 A HOH 2188 5 HOH HOH 2188 A HOH 2189 5 HOH HOH 2189 A HOH 2190 5 HOH HOH 2190 A n 1 46 A n 2 47 A n 3 48 A n 4 49 A n 5 50 A n 6 51 A n 7 52 A n 8 53 A n 9 54 A n 10 55 A n 11 56 A n 12 57 A n 13 58 A n 14 59 A n 15 60 A n 16 61 A n 17 62 A n 18 63 A n 19 64 A LEU 65 n 20 LEU 65 A ASP 66 n 21 ASP 66 A GLY 67 n 22 GLY 67 A PRO 68 n 23 PRO 68 A TYR 69 n 24 TYR 69 A GLN 70 n 25 GLN 70 A PRO 71 n 26 PRO 71 A THR 72 n 27 THR 72 A THR 73 n 28 THR 73 A PHE 74 n 29 PHE 74 A ASN 75 n 30 ASN 75 A PRO 76 n 31 PRO 76 A PRO 77 n 32 PRO 77 A VAL 78 n 33 VAL 78 A ASP 79 n 34 ASP 79 A TYR 80 n 35 TYR 80 A TRP 81 n 36 TRP 81 A MET 82 n 37 MET 82 A LEU 83 n 38 LEU 83 A LEU 84 n 39 LEU 84 A ALA 85 n 40 ALA 85 A PRO 86 n 41 PRO 86 A THR 87 n 42 THR 87 A ALA 88 n 43 ALA 88 A ALA 89 n 44 ALA 89 A GLY 90 n 45 GLY 90 A VAL 91 n 46 VAL 91 A VAL 92 n 47 VAL 92 A VAL 93 n 48 VAL 93 A GLU 94 n 49 GLU 94 A GLY 95 n 50 GLY 95 A THR 96 n 51 THR 96 A ASN 97 n 52 ASN 97 A ASN 98 n 53 ASN 98 A THR 99 n 54 THR 99 A ASP 100 n 55 ASP 100 A ARG 101 n 56 ARG 101 A TRP 102 n 57 TRP 102 A LEU 103 n 58 LEU 103 A ALA 104 n 59 ALA 104 A THR 105 n 60 THR 105 A ILE 106 n 61 ILE 106 A LEU 107 n 62 LEU 107 A VAL 108 n 63 VAL 108 A GLU 109 n 64 GLU 109 A PRO 110 n 65 PRO 110 A ASN 111 n 66 ASN 111 A VAL 112 n 67 VAL 112 A THR 113 n 68 THR 113 A SER 114 n 69 SER 114 A GLU 115 n 70 GLU 115 A THR 116 n 71 THR 116 A ARG 117 n 72 ARG 117 A SER 118 n 73 SER 118 A TYR 119 n 74 TYR 119 A THR 120 n 75 THR 120 A LEU 121 n 76 LEU 121 A PHE 122 n 77 PHE 122 A GLY 123 n 78 GLY 123 A THR 124 n 79 THR 124 A GLN 125 n 80 GLN 125 A GLU 126 n 81 GLU 126 A GLN 127 n 82 GLN 127 A ILE 128 n 83 ILE 128 A THR 129 n 84 THR 129 A ILE 130 n 85 ILE 130 A ALA 131 n 86 ALA 131 A ASN 132 n 87 ASN 132 A ALA 133 n 88 ALA 133 A SER 134 n 89 SER 134 A GLN 135 n 90 GLN 135 A THR 136 n 91 THR 136 A GLN 137 n 92 GLN 137 A TRP 138 n 93 TRP 138 A LYS 139 n 94 LYS 139 A PHE 140 n 95 PHE 140 A ILE 141 n 96 ILE 141 A ASP 142 n 97 ASP 142 A VAL 143 n 98 VAL 143 A VAL 144 n 99 VAL 144 A LYS 145 n 100 LYS 145 A THR 146 n 101 THR 146 A THR 147 n 102 THR 147 A GLN 148 n 103 GLN 148 A ASN 149 n 104 ASN 149 A GLY 150 n 105 GLY 150 A SER 151 n 106 SER 151 A TYR 152 n 107 TYR 152 A SER 153 n 108 SER 153 A GLN 154 n 109 GLN 154 A TYR 155 n 110 TYR 155 A GLY 156 n 111 GLY 156 A PRO 157 n 112 PRO 157 A LEU 158 n 113 LEU 158 A GLN 159 n 114 GLN 159 A SER 160 n 115 SER 160 A THR 161 n 116 THR 161 A PRO 162 n 117 PRO 162 A LYS 163 n 118 LYS 163 A LEU 164 n 119 LEU 164 A TYR 165 n 120 TYR 165 A ALA 166 n 121 ALA 166 A VAL 167 n 122 VAL 167 A MET 168 n 123 MET 168 A LYS 169 n 124 LYS 169 A HIS 170 n 125 HIS 170 A ASN 171 n 126 ASN 171 A GLY 172 n 127 GLY 172 A LYS 173 n 128 LYS 173 A ILE 174 n 129 ILE 174 A TYR 175 n 130 TYR 175 A THR 176 n 131 THR 176 A TYR 177 n 132 TYR 177 A ASN 178 n 133 ASN 178 A GLY 179 n 134 GLY 179 A GLU 180 n 135 GLU 180 A THR 181 n 136 THR 181 A PRO 182 n 137 PRO 182 A ASN 183 n 138 ASN 183 A VAL 184 n 139 VAL 184 A THR 185 n 140 THR 185 A THR 186 n 141 THR 186 A LYS 187 n 142 LYS 187 A TYR 188 n 143 TYR 188 A TYR 189 n 144 TYR 189 A SER 190 n 145 SER 190 A THR 191 n 146 THR 191 A THR 192 n 147 THR 192 A ASN 193 n 148 ASN 193 A TYR 194 n 149 TYR 194 A ASP 195 n 150 ASP 195 A SER 196 n 151 SER 196 A VAL 197 n 152 VAL 197 A ASN 198 n 153 ASN 198 A MET 199 n 154 MET 199 A THR 200 n 155 THR 200 A ALA 201 n 156 ALA 201 A PHE 202 n 157 PHE 202 A CYS 203 n 158 CYS 203 A ASP 204 n 159 ASP 204 A PHE 205 n 160 PHE 205 A TYR 206 n 161 TYR 206 A ILE 207 n 162 ILE 207 A ILE 208 n 163 ILE 208 A PRO 209 n 164 PRO 209 A ARG 210 n 165 ARG 210 A GLU 211 n 166 GLU 211 A GLU 212 n 167 GLU 212 A GLU 213 n 168 GLU 213 A SER 214 n 169 SER 214 A THR 215 n 170 THR 215 A CYS 216 n 171 CYS 216 A THR 217 n 172 THR 217 A GLU 218 n 173 GLU 218 A TYR 219 n 174 TYR 219 A ILE 220 n 175 ILE 220 A ASN 221 n 176 ASN 221 A ASN 222 n 177 ASN 222 A GLY 223 n 178 GLY 223 A LEU 224 n 179 LEU 224 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 72 A N THR 27 A O ALA 201 A O ALA 156 A O THR 200 A O THR 155 A N GLU 94 A N GLU 49 A N GLY 90 A N GLY 45 A O LEU 107 A O LEU 62 A N VAL 108 A N VAL 63 A O LYS 139 A O LYS 94 A N PHE 140 A N PHE 95 A O LEU 158 A O LEU 113 A O ASP 204 A O ASP 159 A N ALA 85 A N ALA 40 A N LEU 84 A N LEU 39 A O TYR 165 A O TYR 120 A O MET 168 A O MET 123 A N TYR 175 A N TYR 130 A O ILE 174 A O ILE 129 A N TYR 189 A N TYR 144 A N GLU 115 A N GLU 70 A O ILE 130 A O ILE 85 1 A HOH 2167 E HOH 1 A HOH 2188 E HOH 1 A GLY 46 A GLY 1 1 Y 1 A SER 47 A SER 2 1 Y 1 A PRO 48 A PRO 3 1 Y 1 A GLU 49 A GLU 4 1 Y 1 A PHE 50 A PHE 5 1 Y 1 A PRO 51 A PRO 6 1 Y 1 A GLY 52 A GLY 7 1 Y 1 A ARG 53 A ARG 8 1 Y 1 A GLU 54 A GLU 9 1 Y 1 A ASN 55 A ASN 10 1 Y 1 A LEU 56 A LEU 11 1 Y 1 A TYR 57 A TYR 12 1 Y 1 A PHE 58 A PHE 13 1 Y 1 A GLN 59 A GLN 14 1 Y 1 A GLY 60 A GLY 15 1 Y 1 A ARG 61 A ARG 16 1 Y 1 A GLU 62 A GLU 17 1 Y 1 A PRO 63 A PRO 18 1 Y 1 A VAL 64 A VAL 19 1 Y 1 A THR 99 -128.88 -68.59 1 A SER 114 -31.97 122.09 1 A PRO 182 -93.69 32.80 14.5 0.1810000 0.1690000 1.4 25 1530 30898 30898 5 99.5 Random 10000 1 THROUGHOUT 0.0 SIR Engh & Huber 0.15 0.14 5.0 0.07 0.07 1.4 25 190 1496 33 0 1273 0.015 1.86 27.1 1.25 1.294 1.5 1.852 2.0 2.521 2.0 3.292 2.5 0.2200000 0.2040000 1.45 142 2895 3037 10 5 99.5 12.8 1.4 30 1KQR 31002 31002 0.0 0.0 0.0500000 1 37.4 8.25 99.5 0.2510000 1.4 1.43 5.51 1993 1 5.71 98.3 refinement CNS data reduction DENZO data scaling HKL-2000 phasing CNS Crystal Structure of the Rhesus Rotavirus VP4 Sialic Acid Binding Domain in Complex with 2-O-methyl-alpha-D-N-acetyl neuraminic acid 1 N N 2 N N 3 N N 4 N N 5 N N A ASN 193 A ASN 148 HELX_P A VAL 197 A VAL 152 5 1 5 A GLU 212 A GLU 167 HELX_P A GLY 223 A GLY 178 1 2 12 VIRAL PROTEIN rotavirus, VP4, VP8*, spike protein, outer capsid, sialic acid, hemagglutinin, cell attachment, neutralization antigen, lectin, galectin fold, Viral protein A GLY 67 A GLY 22 1 A PRO 68 A PRO 23 0.30 A GLY 156 A GLY 111 1 A PRO 157 A PRO 112 -0.17 A THR 181 A THR 136 1 A PRO 182 A PRO 137 1.20 VP4_ROTRH UNP 1 62 P12473 EPVLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFI DVVKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYIN NGL 62 224 1KQR 62 224 P12473 A 1 17 179 1 cloning artifact GLY 46 1KQR A P12473 UNP 1 1 cloning artifact SER 47 1KQR A P12473 UNP 2 1 cloning artifact PRO 48 1KQR A P12473 UNP 3 1 cloning artifact GLU 49 1KQR A P12473 UNP 4 1 cloning artifact PHE 50 1KQR A P12473 UNP 5 1 cloning artifact PRO 51 1KQR A P12473 UNP 6 1 cloning artifact GLY 52 1KQR A P12473 UNP 7 1 cloning artifact ARG 53 1KQR A P12473 UNP 8 1 cloning artifact GLU 54 1KQR A P12473 UNP 9 1 cloning artifact ASN 55 1KQR A P12473 UNP 10 1 cloning artifact LEU 56 1KQR A P12473 UNP 11 1 cloning artifact TYR 57 1KQR A P12473 UNP 12 1 cloning artifact PHE 58 1KQR A P12473 UNP 13 1 cloning artifact GLN 59 1KQR A P12473 UNP 14 1 cloning artifact GLY 60 1KQR A P12473 UNP 15 1 cloning artifact ARG 61 1KQR A P12473 UNP 16 6 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 72 A THR 27 A ASN 75 A ASN 30 A MET 199 A MET 154 A PHE 202 A PHE 157 A GLY 90 A GLY 45 A ASN 97 A ASN 52 A ARG 101 A ARG 56 A VAL 108 A VAL 63 A TRP 138 A TRP 93 A LYS 145 A LYS 100 A SER 153 A SER 108 A SER 160 A SER 115 A ASP 204 A ASP 159 A ILE 208 A ILE 163 A TYR 80 A TYR 35 A ALA 85 A ALA 40 A LEU 164 A LEU 119 A HIS 170 A HIS 125 A LYS 173 A LYS 128 A THR 181 A THR 136 A THR 185 A THR 140 A THR 191 A THR 146 A SER 114 A SER 69 A LEU 121 A LEU 76 A THR 124 A THR 79 A ALA 131 A ALA 86 92 P 41 21 2