0.019144
0.011053
0.000000
0.000000
0.022105
0.000000
0.000000
0.000000
0.029546
0.00000
0.00000
0.00000
Savchenko, A.
Zhang, R.
Joachimiak, A.
Edwards, A.
Akarina, T.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
3
90.00
90.00
120.00
52.237
52.237
33.846
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
54
162
165
10.1002/prot.10585
14705033
X-ray crystal structure of CutA from Thermotoga maritima at 1.4 A resolution.
2004
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2001-11-20
SBC-2
Si 111 channel
MAD
M
x-ray
1
0.9793
1.0
0.9791
1.0
0.95200
1.0
19-ID
APS
0.9793,0.9791,0.95200
SYNCHROTRON
APS BEAMLINE 19-ID
15021.697
Protein TM1056, cutA
1
man
polymer
18.015
water
125
nat
water
no
yes
MGSSHHHHHHSSGREALYF(MSE)GH(MSE)ILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKE
WAAIFKTTEEKEKELYEELRKLHPYETPAIFTLKVENILTEY(MSE)NWLRESVLGS
MGSSHHHHHHSSGREALYFMGHMILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTT
EEKEKELYEELRKLHPYETPAIFTLKVENILTEYMNWLRESVLGS
A
APC012
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermotoga
Escherichia
Escherichia coli
sample
2336
Thermotoga maritima
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
Protein was expressed as fusion with N-terminal tag MGSSHHHHHHSSGRENLYFQGHM and C-terminal fusion of GS
modified peT15b
1
1.77
30.70
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
software
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
1
0
2002-08-14
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-11
_software.classification
_software.name
SEQUENCE
The assignement of Ile94 was based on high resolution
electron density maps
Y
RCSB
Y
RCSB
2002-01-08
REL
HOH
water
TIP
200
2
HOH
HOH
200
A
TIP
201
2
HOH
HOH
201
A
TIP
202
2
HOH
HOH
202
A
TIP
203
2
HOH
HOH
203
A
TIP
204
2
HOH
HOH
204
A
TIP
205
2
HOH
HOH
205
A
TIP
206
2
HOH
HOH
206
A
TIP
207
2
HOH
HOH
207
A
TIP
208
2
HOH
HOH
208
A
TIP
209
2
HOH
HOH
209
A
TIP
210
2
HOH
HOH
210
A
TIP
211
2
HOH
HOH
211
A
TIP
212
2
HOH
HOH
212
A
TIP
213
2
HOH
HOH
213
A
TIP
214
2
HOH
HOH
214
A
TIP
215
2
HOH
HOH
215
A
TIP
216
2
HOH
HOH
216
A
TIP
217
2
HOH
HOH
217
A
TIP
218
2
HOH
HOH
218
A
TIP
219
2
HOH
HOH
219
A
TIP
220
2
HOH
HOH
220
A
TIP
221
2
HOH
HOH
221
A
TIP
222
2
HOH
HOH
222
A
TIP
223
2
HOH
HOH
223
A
TIP
224
2
HOH
HOH
224
A
TIP
225
2
HOH
HOH
225
A
TIP
226
2
HOH
HOH
226
A
TIP
227
2
HOH
HOH
227
A
TIP
228
2
HOH
HOH
228
A
TIP
229
2
HOH
HOH
229
A
TIP
230
2
HOH
HOH
230
A
TIP
231
2
HOH
HOH
231
A
TIP
232
2
HOH
HOH
232
A
TIP
233
2
HOH
HOH
233
A
TIP
234
2
HOH
HOH
234
A
TIP
235
2
HOH
HOH
235
A
TIP
236
2
HOH
HOH
236
A
TIP
237
2
HOH
HOH
237
A
TIP
238
2
HOH
HOH
238
A
TIP
239
2
HOH
HOH
239
A
TIP
240
2
HOH
HOH
240
A
TIP
241
2
HOH
HOH
241
A
TIP
242
2
HOH
HOH
242
A
TIP
243
2
HOH
HOH
243
A
TIP
244
2
HOH
HOH
244
A
TIP
245
2
HOH
HOH
245
A
TIP
246
2
HOH
HOH
246
A
TIP
247
2
HOH
HOH
247
A
TIP
248
2
HOH
HOH
248
A
TIP
249
2
HOH
HOH
249
A
TIP
250
2
HOH
HOH
250
A
TIP
251
2
HOH
HOH
251
A
TIP
252
2
HOH
HOH
252
A
TIP
253
2
HOH
HOH
253
A
TIP
254
2
HOH
HOH
254
A
TIP
255
2
HOH
HOH
255
A
TIP
256
2
HOH
HOH
256
A
TIP
257
2
HOH
HOH
257
A
TIP
258
2
HOH
HOH
258
A
TIP
259
2
HOH
HOH
259
A
TIP
260
2
HOH
HOH
260
A
TIP
261
2
HOH
HOH
261
A
TIP
262
2
HOH
HOH
262
A
TIP
263
2
HOH
HOH
263
A
TIP
264
2
HOH
HOH
264
A
TIP
265
2
HOH
HOH
265
A
TIP
266
2
HOH
HOH
266
A
TIP
267
2
HOH
HOH
267
A
TIP
268
2
HOH
HOH
268
A
TIP
269
2
HOH
HOH
269
A
TIP
270
2
HOH
HOH
270
A
TIP
271
2
HOH
HOH
271
A
TIP
272
2
HOH
HOH
272
A
TIP
273
2
HOH
HOH
273
A
TIP
274
2
HOH
HOH
274
A
TIP
275
2
HOH
HOH
275
A
TIP
276
2
HOH
HOH
276
A
TIP
277
2
HOH
HOH
277
A
TIP
278
2
HOH
HOH
278
A
TIP
279
2
HOH
HOH
279
A
TIP
280
2
HOH
HOH
280
A
TIP
281
2
HOH
HOH
281
A
TIP
282
2
HOH
HOH
282
A
TIP
283
2
HOH
HOH
283
A
TIP
284
2
HOH
HOH
284
A
TIP
285
2
HOH
HOH
285
A
TIP
286
2
HOH
HOH
286
A
TIP
287
2
HOH
HOH
287
A
TIP
288
2
HOH
HOH
288
A
TIP
289
2
HOH
HOH
289
A
TIP
290
2
HOH
HOH
290
A
TIP
291
2
HOH
HOH
291
A
TIP
292
2
HOH
HOH
292
A
TIP
293
2
HOH
HOH
293
A
TIP
294
2
HOH
HOH
294
A
TIP
295
2
HOH
HOH
295
A
TIP
296
2
HOH
HOH
296
A
TIP
297
2
HOH
HOH
297
A
TIP
298
2
HOH
HOH
298
A
TIP
299
2
HOH
HOH
299
A
TIP
300
2
HOH
HOH
300
A
TIP
301
2
HOH
HOH
301
A
TIP
302
2
HOH
HOH
302
A
TIP
303
2
HOH
HOH
303
A
TIP
304
2
HOH
HOH
304
A
TIP
305
2
HOH
HOH
305
A
TIP
306
2
HOH
HOH
306
A
TIP
307
2
HOH
HOH
307
A
TIP
308
2
HOH
HOH
308
A
TIP
309
2
HOH
HOH
309
A
TIP
310
2
HOH
HOH
310
A
TIP
311
2
HOH
HOH
311
A
TIP
312
2
HOH
HOH
312
A
TIP
313
2
HOH
HOH
313
A
TIP
314
2
HOH
HOH
314
A
TIP
315
2
HOH
HOH
315
A
TIP
316
2
HOH
HOH
316
A
TIP
317
2
HOH
HOH
317
A
TIP
318
2
HOH
HOH
318
A
TIP
319
2
HOH
HOH
319
A
TIP
320
2
HOH
HOH
320
A
TIP
321
2
HOH
HOH
321
A
TIP
322
2
HOH
HOH
322
A
TIP
323
2
HOH
HOH
323
A
TIP
324
2
HOH
HOH
324
A
n
1
-15
A
n
2
-14
A
n
3
-13
A
n
4
-12
A
n
5
-11
A
n
6
-10
A
n
7
-9
A
n
8
-8
A
n
9
-7
A
n
10
-6
A
n
11
-5
A
n
12
-4
A
n
13
-3
A
n
14
-2
A
n
15
-1
A
ALA
0
n
16
ALA
0
A
LEU
1
n
17
LEU
1
A
TYR
2
n
18
TYR
2
A
PHE
3
n
19
PHE
3
A
MSE
4
n
20
MSE
4
A
GLY
5
n
21
GLY
5
A
HIS
6
n
22
HIS
6
A
MSE
7
n
23
MSE
7
A
ILE
8
n
24
ILE
8
A
LEU
9
n
25
LEU
9
A
VAL
10
n
26
VAL
10
A
TYR
11
n
27
TYR
11
A
SER
12
n
28
SER
12
A
THR
13
n
29
THR
13
A
PHE
14
n
30
PHE
14
A
PRO
15
n
31
PRO
15
A
ASN
16
n
32
ASN
16
A
GLU
17
n
33
GLU
17
A
GLU
18
n
34
GLU
18
A
LYS
19
n
35
LYS
19
A
ALA
20
n
36
ALA
20
A
LEU
21
n
37
LEU
21
A
GLU
22
n
38
GLU
22
A
ILE
23
n
39
ILE
23
A
GLY
24
n
40
GLY
24
A
ARG
25
n
41
ARG
25
A
LYS
26
n
42
LYS
26
A
LEU
27
n
43
LEU
27
A
LEU
28
n
44
LEU
28
A
GLU
29
n
45
GLU
29
A
LYS
30
n
46
LYS
30
A
ARG
31
n
47
ARG
31
A
LEU
32
n
48
LEU
32
A
ILE
33
n
49
ILE
33
A
ALA
34
n
50
ALA
34
A
CYS
35
n
51
CYS
35
A
PHE
36
n
52
PHE
36
A
ASN
37
n
53
ASN
37
A
ALA
38
n
54
ALA
38
A
PHE
39
n
55
PHE
39
A
GLU
40
n
56
GLU
40
A
ILE
41
n
57
ILE
41
A
ARG
42
n
58
ARG
42
A
SER
43
n
59
SER
43
A
GLY
44
n
60
GLY
44
A
TYR
45
n
61
TYR
45
A
TRP
46
n
62
TRP
46
A
TRP
47
n
63
TRP
47
A
LYS
48
n
64
LYS
48
A
GLY
49
n
65
GLY
49
A
GLU
50
n
66
GLU
50
A
ILE
51
n
67
ILE
51
A
VAL
52
n
68
VAL
52
A
GLN
53
n
69
GLN
53
A
ASP
54
n
70
ASP
54
A
LYS
55
n
71
LYS
55
A
GLU
56
n
72
GLU
56
A
TRP
57
n
73
TRP
57
A
ALA
58
n
74
ALA
58
A
ALA
59
n
75
ALA
59
A
ILE
60
n
76
ILE
60
A
PHE
61
n
77
PHE
61
A
LYS
62
n
78
LYS
62
A
THR
63
n
79
THR
63
A
THR
64
n
80
THR
64
A
GLU
65
n
81
GLU
65
A
GLU
66
n
82
GLU
66
A
LYS
67
n
83
LYS
67
A
GLU
68
n
84
GLU
68
A
LYS
69
n
85
LYS
69
A
GLU
70
n
86
GLU
70
A
LEU
71
n
87
LEU
71
A
TYR
72
n
88
TYR
72
A
GLU
73
n
89
GLU
73
A
GLU
74
n
90
GLU
74
A
LEU
75
n
91
LEU
75
A
ARG
76
n
92
ARG
76
A
LYS
77
n
93
LYS
77
A
LEU
78
n
94
LEU
78
A
HIS
79
n
95
HIS
79
A
PRO
80
n
96
PRO
80
A
TYR
81
n
97
TYR
81
A
GLU
82
n
98
GLU
82
A
THR
83
n
99
THR
83
A
PRO
84
n
100
PRO
84
A
ALA
85
n
101
ALA
85
A
ILE
86
n
102
ILE
86
A
PHE
87
n
103
PHE
87
A
THR
88
n
104
THR
88
A
LEU
89
n
105
LEU
89
A
LYS
90
n
106
LYS
90
A
VAL
91
n
107
VAL
91
A
GLU
92
n
108
GLU
92
A
ASN
93
n
109
ASN
93
A
ILE
94
n
110
ILE
94
A
LEU
95
n
111
LEU
95
A
THR
96
n
112
THR
96
A
GLU
97
n
113
GLU
97
A
TYR
98
n
114
TYR
98
A
MSE
99
n
115
MSE
99
A
ASN
100
n
116
ASN
100
A
TRP
101
n
117
TRP
101
A
LEU
102
n
118
LEU
102
A
ARG
103
n
119
ARG
103
A
GLU
104
n
120
GLU
104
A
SER
105
n
121
SER
105
A
VAL
106
n
122
VAL
106
A
LEU
107
n
123
LEU
107
A
GLY
108
n
124
GLY
108
A
SER
109
n
125
SER
109
A
author_and_software_defined_assembly
PQS
3
trimeric
A
MSE
4
SELENOMETHIONINE
A
MSE
20
MET
A
MSE
7
SELENOMETHIONINE
A
MSE
23
MET
A
MSE
99
SELENOMETHIONINE
A
MSE
115
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_775
-y+2,x-y+2,z
crystal symmetry operation
52.2370000000
90.4771380350
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_575
-x+y,-x+2,z
crystal symmetry operation
-52.2370000000
90.4771380350
0.0000000000
A
N
PHE
3
A
N
PHE
19
A
O
ILE
94
A
O
ILE
110
A
N
PHE
39
A
N
PHE
55
A
O
ALA
58
A
O
ALA
74
A
O
PHE
61
A
O
PHE
77
A
N
VAL
10
A
N
VAL
26
A
N
TYR
11
A
N
TYR
27
A
O
PHE
87
A
O
PHE
103
1
A
MET
-15
A
MET
1
1
Y
1
A
GLY
-14
A
GLY
2
1
Y
1
A
SER
-13
A
SER
3
1
Y
1
A
SER
-12
A
SER
4
1
Y
1
A
HIS
-11
A
HIS
5
1
Y
1
A
HIS
-10
A
HIS
6
1
Y
1
A
HIS
-9
A
HIS
7
1
Y
1
A
HIS
-8
A
HIS
8
1
Y
1
A
HIS
-7
A
HIS
9
1
Y
1
A
HIS
-6
A
HIS
10
1
Y
1
A
SER
-5
A
SER
11
1
Y
1
A
SER
-4
A
SER
12
1
Y
1
A
GLY
-3
A
GLY
13
1
Y
1
A
ARG
-2
A
ARG
14
1
Y
1
A
GLU
-1
A
GLU
15
1
Y
1
A
A
O
O
HOH
HOH
276
276
1.83
1_555
2_675
1
A
HIS
6
-140.27
45.00
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
15.3
-0.67
0.00
0.00
-0.67
0.00
1.34
0.241
0.006
0.218
0.218
1.40
20.68
1571
20453
19451
5.2
74.1
RANDOM
485887.96
485887.96
0.000000
1
RESTRAINED
THROUGHOUT
2.0
MAD
FLAT MODEL
49.9317
0.389531
0.19
0.17
5.00
0.10
1.40
20.68
125
1055
0
0
930
0.006
1.2
21.8
0.66
0.232
0.018
0.22
1.49
145
2482
6
5.5
38.5
12.6
1.4
50
1KR4
20453
19451
4.0
2.0
0.056
1
24.25
5.49
95.1
0.416
1.40
1.45
1.66
1829
1
4.875
87.7
data scaling
d*TREK
data reduction
HKL-2000
refinement
CNS
data reduction
d*TREK
data scaling
HKL-2000
phasing
CNS
Protein of TM1056 from Thermotoga maritima,
cutA
Structure Genomics, Protein TM1056, cutA
1
N
N
2
N
N
A
ASN
16
A
ASN
32
HELX_P
A
LYS
30
A
LYS
46
1
1
15
A
LYS
67
A
LYS
83
HELX_P
A
HIS
79
A
HIS
95
1
2
13
A
THR
96
A
THR
112
HELX_P
A
VAL
106
A
VAL
122
1
3
11
covale
1.329
A
PHE
3
A
C
PHE
19
1_555
A
MSE
4
A
N
MSE
20
1_555
covale
1.329
A
MSE
4
A
C
MSE
20
1_555
A
GLY
5
A
N
GLY
21
1_555
covale
1.329
A
HIS
6
A
C
HIS
22
1_555
A
MSE
7
A
N
MSE
23
1_555
covale
1.325
A
MSE
7
A
C
MSE
23
1_555
A
ILE
8
A
N
ILE
24
1_555
covale
1.332
A
TYR
98
A
C
TYR
114
1_555
A
MSE
99
A
N
MSE
115
1_555
covale
1.329
A
MSE
99
A
C
MSE
115
1_555
A
ASN
100
A
N
ASN
116
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
cutA, structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION
CUTA_THEMA
UNP
1
1
Q9X0E6
MILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTTEEKEKELYEELRKLHPYETPAI
FTLKVENVLTEYMNWLRESVL
1
101
1KR4
7
107
Q9X0E6
A
1
23
123
1
EXPRESSION TAG
MET
-15
1KR4
A
Q9X0E6
UNP
1
1
EXPRESSION TAG
GLY
-14
1KR4
A
Q9X0E6
UNP
2
1
EXPRESSION TAG
SER
-13
1KR4
A
Q9X0E6
UNP
3
1
EXPRESSION TAG
SER
-12
1KR4
A
Q9X0E6
UNP
4
1
EXPRESSION TAG
HIS
-11
1KR4
A
Q9X0E6
UNP
5
1
EXPRESSION TAG
HIS
-10
1KR4
A
Q9X0E6
UNP
6
1
EXPRESSION TAG
HIS
-9
1KR4
A
Q9X0E6
UNP
7
1
EXPRESSION TAG
HIS
-8
1KR4
A
Q9X0E6
UNP
8
1
EXPRESSION TAG
HIS
-7
1KR4
A
Q9X0E6
UNP
9
1
EXPRESSION TAG
HIS
-6
1KR4
A
Q9X0E6
UNP
10
1
EXPRESSION TAG
SER
-5
1KR4
A
Q9X0E6
UNP
11
1
EXPRESSION TAG
SER
-4
1KR4
A
Q9X0E6
UNP
12
1
EXPRESSION TAG
GLY
-3
1KR4
A
Q9X0E6
UNP
13
1
EXPRESSION TAG
ARG
-2
1KR4
A
Q9X0E6
UNP
14
1
EXPRESSION TAG
GLU
-1
1KR4
A
Q9X0E6
UNP
15
1
EXPRESSION TAG
ALA
0
1KR4
A
Q9X0E6
UNP
16
1
EXPRESSION TAG
LEU
1
1KR4
A
Q9X0E6
UNP
17
1
EXPRESSION TAG
TYR
2
1KR4
A
Q9X0E6
UNP
18
1
EXPRESSION TAG
PHE
3
1KR4
A
Q9X0E6
UNP
19
1
EXPRESSION TAG
MSE
4
1KR4
A
Q9X0E6
UNP
20
1
EXPRESSION TAG
GLY
5
1KR4
A
Q9X0E6
UNP
21
1
EXPRESSION TAG
HIS
6
1KR4
A
Q9X0E6
UNP
22
1
MET
MODIFIED RESIDUE
MSE
7
1KR4
A
Q9X0E6
UNP
1
23
1
VAL
SEE REMARK 999
ILE
94
1KR4
A
Q9X0E6
UNP
88
110
1
MET
MODIFIED RESIDUE
MSE
99
1KR4
A
Q9X0E6
UNP
93
115
1
CLONING ARTIFACT
GLY
108
1KR4
A
Q9X0E6
UNP
124
1
CLONING ARTIFACT
SER
109
1KR4
A
Q9X0E6
UNP
125
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
2
A
TYR
18
A
PHE
3
A
PHE
19
A
ILE
94
A
ILE
110
A
LEU
95
A
LEU
111
A
CYS
35
A
CYS
51
A
TRP
47
A
TRP
63
A
GLU
50
A
GLU
66
A
THR
64
A
THR
80
A
MSE
7
A
MSE
23
A
PHE
14
A
PHE
30
A
ILE
86
A
ILE
102
A
LEU
89
A
LEU
105
143
P 3