1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Commans, S. Dardel, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 253 100 113 10.1006/jmbi.1995.0539 7473706 Solution structure of the anticodon-binding domain of Escherichia coli lysyl-tRNA synthetase and studies of its interaction with tRNA(Lys). 1995 UK Nucleic Acids Res. NARHAD 0389 0305-1048 18 305 Homology of Lyss and Lysu, the Two Escherichia Coli Genes Encoding Distinct Lysyl-tRNA Synthetase Species 1990 10.2210/pdb1krs/pdb pdb_00001krs 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13544.372 LYSYL-TRNA SYNTHETASE (PRODUCT OF LYSS GENE) 6.1.1.6 1 man polymer no no AEQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVY NEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKA AEQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVY NEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia JM101TR Escherichia sample PTRC99A (IPTG-INDUCIBLE LAC PROMOTER) LYSS CODONS 40 - 149 562 Escherichia coli LYSS CODONS 40 - 149 562 Escherichia coli LAC PTRC-ND database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1995-09-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details Y BNL 1995-06-09 REL 1 BRUNGER refinement X-PLOR 3.1 n 1 30 A n 2 31 A n 3 32 A n 4 33 A n 5 34 A n 6 35 A n 7 36 A n 8 37 A n 9 38 A n 10 39 A PHE 40 n 11 PHE 40 A ARG 41 n 12 ARG 41 A ARG 42 n 13 ARG 42 A ASP 43 n 14 ASP 43 A HIS 44 n 15 HIS 44 A THR 45 n 16 THR 45 A SER 46 n 17 SER 46 A ASP 47 n 18 ASP 47 A GLN 48 n 19 GLN 48 A LEU 49 n 20 LEU 49 A HIS 50 n 21 HIS 50 A ALA 51 n 22 ALA 51 A GLU 52 n 23 GLU 52 A PHE 53 n 24 PHE 53 A ASP 54 n 25 ASP 54 A GLY 55 n 26 GLY 55 A LYS 56 n 27 LYS 56 A GLU 57 n 28 GLU 57 A ASN 58 n 29 ASN 58 A GLU 59 n 30 GLU 59 A GLU 60 n 31 GLU 60 A LEU 61 n 32 LEU 61 A GLU 62 n 33 GLU 62 A ALA 63 n 34 ALA 63 A LEU 64 n 35 LEU 64 A ASN 65 n 36 ASN 65 A ILE 66 n 37 ILE 66 A GLU 67 n 38 GLU 67 A VAL 68 n 39 VAL 68 A ALA 69 n 40 ALA 69 A VAL 70 n 41 VAL 70 A ALA 71 n 42 ALA 71 A GLY 72 n 43 GLY 72 A ARG 73 n 44 ARG 73 A MET 74 n 45 MET 74 A MET 75 n 46 MET 75 A THR 76 n 47 THR 76 A ARG 77 n 48 ARG 77 A ARG 78 n 49 ARG 78 A ILE 79 n 50 ILE 79 A MET 80 n 51 MET 80 A GLY 81 n 52 GLY 81 A LYS 82 n 53 LYS 82 A ALA 83 n 54 ALA 83 A SER 84 n 55 SER 84 A PHE 85 n 56 PHE 85 A VAL 86 n 57 VAL 86 A THR 87 n 58 THR 87 A LEU 88 n 59 LEU 88 A GLN 89 n 60 GLN 89 A ASP 90 n 61 ASP 90 A VAL 91 n 62 VAL 91 A GLY 92 n 63 GLY 92 A GLY 93 n 64 GLY 93 A ARG 94 n 65 ARG 94 A ILE 95 n 66 ILE 95 A GLN 96 n 67 GLN 96 A LEU 97 n 68 LEU 97 A TYR 98 n 69 TYR 98 A VAL 99 n 70 VAL 99 A ALA 100 n 71 ALA 100 A ARG 101 n 72 ARG 101 A ASP 102 n 73 ASP 102 A ASP 103 n 74 ASP 103 A LEU 104 n 75 LEU 104 A PRO 105 n 76 PRO 105 A GLU 106 n 77 GLU 106 A GLY 107 n 78 GLY 107 A VAL 108 n 79 VAL 108 A TYR 109 n 80 TYR 109 A ASN 110 n 81 ASN 110 A GLU 111 n 82 GLU 111 A GLN 112 n 83 GLN 112 A PHE 113 n 84 PHE 113 A LYS 114 n 85 LYS 114 A LYS 115 n 86 LYS 115 A TRP 116 n 87 TRP 116 A ASP 117 n 88 ASP 117 A LEU 118 n 89 LEU 118 A GLY 119 n 90 GLY 119 A ASP 120 n 91 ASP 120 A ILE 121 n 92 ILE 121 A LEU 122 n 93 LEU 122 A GLY 123 n 94 GLY 123 A ALA 124 n 95 ALA 124 A LYS 125 n 96 LYS 125 A GLY 126 n 97 GLY 126 A LYS 127 n 98 LYS 127 A LEU 128 n 99 LEU 128 A PHE 129 n 100 PHE 129 A LYS 130 n 101 LYS 130 A THR 131 n 102 THR 131 A LYS 132 n 103 LYS 132 A THR 133 n 104 THR 133 A GLY 134 n 105 GLY 134 A GLU 135 n 106 GLU 135 A LEU 136 n 107 LEU 136 A SER 137 n 108 SER 137 A ILE 138 n 109 ILE 138 A HIS 139 n 110 HIS 139 A CYS 140 n 111 CYS 140 A THR 141 n 112 THR 141 A GLU 142 n 113 GLU 142 A LEU 143 n 114 LEU 143 A ARG 144 n 115 ARG 144 A LEU 145 n 116 LEU 145 A LEU 146 n 117 LEU 146 A THR 147 n 118 THR 147 A LYS 148 n 119 LYS 148 A ALA 149 n 120 ALA 149 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 93 A O GLY 64 A N ASP 90 A N ASP 61 A O THR 87 A O THR 58 A N THR 76 A N THR 47 A O GLY 123 A O GLY 94 A N ARG 144 A N ARG 115 1 A ALA 30 A ALA 1 1 Y 1 A GLU 31 A GLU 2 1 Y 1 A GLN 32 A GLN 3 1 Y 1 A GLY 33 A GLY 4 1 Y 1 A ILE 34 A ILE 5 1 Y 1 A ALA 35 A ALA 6 1 Y 1 A PHE 36 A PHE 7 1 Y 1 A PRO 37 A PRO 8 1 Y 1 A ASN 38 A ASN 9 1 Y 1 A ASP 39 A ASP 10 1 Y 1 A ARG 42 0.318 SIDE CHAIN 1 A ARG 73 0.301 SIDE CHAIN 1 A ARG 77 0.309 SIDE CHAIN 1 A ARG 78 0.302 SIDE CHAIN 1 A ARG 94 0.276 SIDE CHAIN 1 A ARG 101 0.314 SIDE CHAIN 1 A ARG 144 0.284 SIDE CHAIN 1 -22.68 2.70 111.00 88.32 A A A N CA C ASP ASP ASP 43 43 43 N 1 20.35 1.70 113.60 133.95 A A A CA CB CG HIS HIS HIS 44 44 44 N 1 -12.95 1.70 111.00 98.05 A A A CB CG CD2 LEU LEU LEU 49 49 49 N 1 -14.95 2.20 117.20 102.25 A A A CA C N GLU GLU GLU 59 59 60 Y 1 -9.56 1.50 110.90 101.34 A A A CA CB CG1 VAL VAL VAL 68 68 68 N 1 -19.06 2.20 117.20 98.14 A A A CA C N VAL VAL ALA 68 68 69 Y 1 -12.54 1.40 110.10 97.56 A A A N CA CB ALA ALA ALA 69 69 69 N 1 21.37 2.70 111.00 132.37 A A A N CA C ALA ALA ALA 69 69 69 N 1 -18.51 2.20 117.20 98.69 A A A CA C N ALA ALA VAL 69 69 70 Y 1 -10.81 1.40 112.40 101.59 A A A CA CB CG2 THR THR THR 76 76 76 N 1 -5.70 0.60 121.00 115.30 A A A CB CG CD2 TYR TYR TYR 98 98 98 N 1 4.52 0.60 121.00 125.52 A A A CB CG CD1 TYR TYR TYR 98 98 98 N 1 -8.86 1.40 110.10 101.24 A A A N CA CB ALA ALA ALA 100 100 100 N 1 -12.27 1.80 110.60 98.33 A A A N CA CB TYR TYR TYR 109 109 109 N 1 -19.34 2.20 113.40 94.06 A A A CA CB CG GLU GLU GLU 111 111 111 N 1 -14.50 1.80 110.60 96.10 A A A N CA CB GLN GLN GLN 112 112 112 N 1 -17.92 2.70 111.00 93.08 A A A N CA C GLN GLN GLN 112 112 112 N 1 -5.00 0.70 120.80 115.80 A A A CB CG CD2 PHE PHE PHE 113 113 113 N 1 4.73 0.70 120.80 125.53 A A A CB CG CD1 PHE PHE PHE 113 113 113 N 1 -18.66 1.90 113.70 95.04 A A A CA CB CG TRP TRP TRP 116 116 116 N 1 9.25 1.30 126.60 135.85 A A A CB CG CD2 TRP TRP TRP 116 116 116 N 1 -14.22 1.30 127.00 112.78 A A A CB CG CD1 TRP TRP TRP 116 116 116 N 1 -13.51 2.20 117.20 103.69 A A A CA C N TRP TRP ASP 116 116 117 Y 1 -13.81 2.20 117.20 103.39 A A A CA C N ASP ASP LEU 117 117 118 Y 1 -12.98 1.70 111.00 98.02 A A A CB CG CD2 LEU LEU LEU 118 118 118 N 1 -20.32 2.50 113.10 92.78 A A A N CA C GLY GLY GLY 123 123 123 N 1 -14.20 2.00 110.40 96.20 A A A N CA CB LEU LEU LEU 136 136 136 N 1 26.41 2.70 111.00 137.41 A A A N CA C LEU LEU LEU 136 136 136 N 1 12.50 1.70 111.00 123.50 A A A CB CG CD2 LEU LEU LEU 145 145 145 N 1 -13.02 2.00 110.40 97.38 A A A N CA CB LEU LEU LEU 146 146 146 N 1 -17.65 2.30 115.30 97.65 A A A CA CB CG LEU LEU LEU 146 146 146 N 1 10.83 1.70 111.00 121.83 A A A CB CG CD2 LEU LEU LEU 146 146 146 N 1 13.02 2.10 120.10 133.12 A A A CA C O LEU LEU LEU 146 146 146 N 1 -25.93 2.20 117.20 91.27 A A A CA C N LEU LEU THR 146 146 147 Y 1 12.91 1.60 122.70 135.61 A A A O C N LEU LEU THR 146 146 147 Y 1 A A CG ND1 HIS HIS 44 44 -0.095 0.015 1.369 1.274 N 1 A A CA CB ALA ALA 69 69 -0.258 0.021 1.520 1.262 N 1 A A CA CB ALA ALA 83 83 -0.173 0.021 1.520 1.347 N 1 A A CG CD2 TRP TRP 116 116 -0.106 0.017 1.432 1.326 N 1 A ARG 41 -107.83 -158.72 1 A HIS 44 -13.94 -100.17 1 A SER 46 98.06 89.75 1 A PHE 53 -38.44 -37.21 1 A LYS 56 -121.22 -167.97 1 A ASN 65 -15.51 143.37 1 A GLU 67 -111.00 66.28 1 A MET 74 -161.81 -149.62 1 A MET 75 179.19 9.90 1 A ARG 78 -141.03 51.96 1 A ILE 79 -47.60 153.85 1 A MET 80 -152.09 38.73 1 A LYS 82 -119.95 -151.03 1 A ALA 83 -3.21 114.12 1 A VAL 91 -24.48 -60.45 1 A PRO 105 -69.99 64.06 1 A VAL 108 -47.09 -19.51 1 A TYR 109 -74.68 -144.19 1 A ASN 110 -40.43 -17.96 1 A LEU 118 -28.98 -114.63 1 A LYS 130 -46.48 90.77 1 A GLU 135 -112.50 -112.42 1 A LEU 136 -21.12 7.29 1 A HIS 139 -117.03 77.95 1 A THR 141 -132.83 -31.66 1 A LEU 146 -78.61 -168.82 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 SOLUTION STRUCTURE OF THE ANTICODON BINDING DOMAIN OF ESCHERICHIA COLI LYSYL-TRNA SYNTHETASE AND STUDIES OF ITS INTERACTIONS WITH TRNA-LYS 1 Y N A GLN 48 A GLN 19 HELX_P A PHE 53 A PHE 24 1 1 6 A ASN 58 A ASN 29 HELX_P A ALA 63 A ALA 34 1 2 6 A GLN 112 A GLN 83 HELX_P A LYS 115 A LYS 86 1 3 4 AMINOACYL-TRNA SYNTHETASE AMINOACYL-TRNA SYNTHETASE SYK1_ECOLI UNP 1 1 P0A8N3 SEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMG KASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQ DQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPE LYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFG KPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLA RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDR MVMLFTNSHTIRDVILFPAMRPVK 26 148 1KRS 30 149 P0A8N3 A 1 1 120 1 ASN deletion 1KRS A P0A8N3 UNP 27 1 LEU deletion 1KRS A P0A8N3 UNP 28 1 ARG deletion 1KRS A P0A8N3 UNP 29 3 2 anti-parallel anti-parallel anti-parallel A GLY 93 A GLY 64 A VAL 99 A VAL 70 A SER 84 A SER 55 A ASP 90 A ASP 61 A ARG 73 A ARG 44 A ARG 77 A ARG 48 A LEU 122 A LEU 93 A PHE 129 A PHE 100 A SER 137 A SER 108 A LEU 145 A LEU 116 1 P 1