0.007628 0.000000 0.000000 0.000000 0.007628 0.000000 0.000000 0.000000 0.013892 0.00000 0.00000 0.00000 Khademi, S. Zhang, D. Swanson, S.M. Wartenberg, A. Witte, C. Meyer, E.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 131.088 131.088 71.985 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Pd 2 106.420 PALLADIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 58 660 667 10.1107/S0907444902003360 11914491 Determination of the structure of an endoglucanase from Aspergillus niger and its mode of inhibition by palladium chloride. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.0 1 mirrors IMAGE PLATE 1994-10-01 MAC Science DIP-2030K Osmic, Model 140-000023 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 24283.145 Endoglucanase A 3.2.1.4 Aspergillus niger Endoglucanase 1 nat polymer 106.420 PALLADIUM ION 3 syn non-polymer 18.015 water 34 nat water no no QTMCSQYDSASSPPYSVNQNLWGEYQGTGSQCVYVDKLSSSGASWHTEWTWSGGEGTVKSYSNSGVTFNKKLVSDVSSIP TSVEWKQDNTNVNADVAYDLFTAANVDHATSSGDYELMIWLARYGNIQPIGKQIATATVGGKSWEVWYGSTTQAGAEQRT YSFVSESPINSYSGDINAFFSYLTQNQGFPASSQYLINLQFGTEAFTGGPATFTVDNWTASVN QTMCSQYDSASSPPYSVNQNLWGEYQGTGSQCVYVDKLSSSGASWHTEWTWSGGEGTVKSYSNSGVTFNKKLVSDVSSIP TSVEWKQDNTNVNADVAYDLFTAANVDHATSSGDYELMIWLARYGNIQPIGKQIATATVGGKSWEVWYGSTTQAGAEQRT YSFVSESPINSYSGDINAFFSYLTQNQGFPASSQYLINLQFGTEAFTGGPATFTVDNWTASVN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Aspergillus sample 5061 Aspergillus niger CBS 554.65 1 3.18 61.36 VAPOR DIFFUSION, HANGING DROP 4.8 PEG 4000, Sodium Acetate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 repository Initial release Version format compliance Version format compliance Structure summary 1 0 2003-01-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-02-01 Structure of Aspergillus niger Endoglucanase HELIX AUTHOR PROVIDED HELIX RECORDS SHEET AUTHOR PROVIDED SHEET RECORDS RCSB Y RCSB 2002-01-10 REL REL PD PALLADIUM ION HOH water PD 224 2 PD PD 224 A PD 225 2 PD PD 225 A PD 226 2 PD PD 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A GLN 1 n 1 GLN 1 A THR 2 n 2 THR 2 A MET 3 n 3 MET 3 A CYS 4 n 4 CYS 4 A SER 5 n 5 SER 5 A GLN 6 n 6 GLN 6 A TYR 7 n 7 TYR 7 A ASP 8 n 8 ASP 8 A SER 9 n 9 SER 9 A ALA 10 n 10 ALA 10 A SER 11 n 11 SER 11 A SER 12 n 12 SER 12 A PRO 13 n 13 PRO 13 A PRO 14 n 14 PRO 14 A TYR 15 n 15 TYR 15 A SER 16 n 16 SER 16 A VAL 17 n 17 VAL 17 A ASN 18 n 18 ASN 18 A GLN 19 n 19 GLN 19 A ASN 20 n 20 ASN 20 A LEU 21 n 21 LEU 21 A TRP 22 n 22 TRP 22 A GLY 23 n 23 GLY 23 A GLU 24 n 24 GLU 24 A TYR 25 n 25 TYR 25 A GLN 26 n 26 GLN 26 A GLY 27 n 27 GLY 27 A THR 28 n 28 THR 28 A GLY 29 n 29 GLY 29 A SER 30 n 30 SER 30 A GLN 31 n 31 GLN 31 A CYS 32 n 32 CYS 32 A VAL 33 n 33 VAL 33 A TYR 34 n 34 TYR 34 A VAL 35 n 35 VAL 35 A ASP 36 n 36 ASP 36 A LYS 37 n 37 LYS 37 A LEU 38 n 38 LEU 38 A SER 39 n 39 SER 39 A SER 40 n 40 SER 40 A SER 41 n 41 SER 41 A GLY 42 n 42 GLY 42 A ALA 43 n 43 ALA 43 A SER 44 n 44 SER 44 A TRP 45 n 45 TRP 45 A HIS 46 n 46 HIS 46 A THR 47 n 47 THR 47 A GLU 48 n 48 GLU 48 A TRP 49 n 49 TRP 49 A THR 50 n 50 THR 50 A TRP 51 n 51 TRP 51 A SER 52 n 52 SER 52 A GLY 53 n 53 GLY 53 A GLY 54 n 54 GLY 54 A GLU 55 n 55 GLU 55 A GLY 56 n 56 GLY 56 A THR 57 n 57 THR 57 A VAL 58 n 58 VAL 58 A LYS 59 n 59 LYS 59 A SER 60 n 60 SER 60 A TYR 61 n 61 TYR 61 A SER 62 n 62 SER 62 A ASN 63 n 63 ASN 63 A SER 64 n 64 SER 64 A GLY 65 n 65 GLY 65 A VAL 66 n 66 VAL 66 A THR 67 n 67 THR 67 A PHE 68 n 68 PHE 68 A ASN 69 n 69 ASN 69 A LYS 70 n 70 LYS 70 A LYS 71 n 71 LYS 71 A LEU 72 n 72 LEU 72 A VAL 73 n 73 VAL 73 A SER 74 n 74 SER 74 A ASP 75 n 75 ASP 75 A VAL 76 n 76 VAL 76 A SER 77 n 77 SER 77 A SER 78 n 78 SER 78 A ILE 79 n 79 ILE 79 A PRO 80 n 80 PRO 80 A THR 81 n 81 THR 81 A SER 82 n 82 SER 82 A VAL 83 n 83 VAL 83 A GLU 84 n 84 GLU 84 A TRP 85 n 85 TRP 85 A LYS 86 n 86 LYS 86 A GLN 87 n 87 GLN 87 A ASP 88 n 88 ASP 88 A ASN 89 n 89 ASN 89 A THR 90 n 90 THR 90 A ASN 91 n 91 ASN 91 A VAL 92 n 92 VAL 92 A ASN 93 n 93 ASN 93 A ALA 94 n 94 ALA 94 A ASP 95 n 95 ASP 95 A VAL 96 n 96 VAL 96 A ALA 97 n 97 ALA 97 A TYR 98 n 98 TYR 98 A ASP 99 n 99 ASP 99 A LEU 100 n 100 LEU 100 A PHE 101 n 101 PHE 101 A THR 102 n 102 THR 102 A ALA 103 n 103 ALA 103 A ALA 104 n 104 ALA 104 A ASN 105 n 105 ASN 105 A VAL 106 n 106 VAL 106 A ASP 107 n 107 ASP 107 A HIS 108 n 108 HIS 108 A ALA 109 n 109 ALA 109 A THR 110 n 110 THR 110 A SER 111 n 111 SER 111 A SER 112 n 112 SER 112 A GLY 113 n 113 GLY 113 A ASP 114 n 114 ASP 114 A TYR 115 n 115 TYR 115 A GLU 116 n 116 GLU 116 A LEU 117 n 117 LEU 117 A MET 118 n 118 MET 118 A ILE 119 n 119 ILE 119 A TRP 120 n 120 TRP 120 A LEU 121 n 121 LEU 121 A ALA 122 n 122 ALA 122 A ARG 123 n 123 ARG 123 A TYR 124 n 124 TYR 124 A GLY 125 n 125 GLY 125 A ASN 126 n 126 ASN 126 A ILE 127 n 127 ILE 127 A GLN 128 n 128 GLN 128 A PRO 129 n 129 PRO 129 A ILE 130 n 130 ILE 130 A GLY 131 n 131 GLY 131 A LYS 132 n 132 LYS 132 A GLN 133 n 133 GLN 133 A ILE 134 n 134 ILE 134 A ALA 135 n 135 ALA 135 A THR 136 n 136 THR 136 A ALA 137 n 137 ALA 137 A THR 138 n 138 THR 138 A VAL 139 n 139 VAL 139 A GLY 140 n 140 GLY 140 A GLY 141 n 141 GLY 141 A LYS 142 n 142 LYS 142 A SER 143 n 143 SER 143 A TRP 144 n 144 TRP 144 A GLU 145 n 145 GLU 145 A VAL 146 n 146 VAL 146 A TRP 147 n 147 TRP 147 A TYR 148 n 148 TYR 148 A GLY 149 n 149 GLY 149 A SER 150 n 150 SER 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A GLN 153 n 153 GLN 153 A ALA 154 n 154 ALA 154 A GLY 155 n 155 GLY 155 A ALA 156 n 156 ALA 156 A GLU 157 n 157 GLU 157 A GLN 158 n 158 GLN 158 A ARG 159 n 159 ARG 159 A THR 160 n 160 THR 160 A TYR 161 n 161 TYR 161 A SER 162 n 162 SER 162 A PHE 163 n 163 PHE 163 A VAL 164 n 164 VAL 164 A SER 165 n 165 SER 165 A GLU 166 n 166 GLU 166 A SER 167 n 167 SER 167 A PRO 168 n 168 PRO 168 A ILE 169 n 169 ILE 169 A ASN 170 n 170 ASN 170 A SER 171 n 171 SER 171 A TYR 172 n 172 TYR 172 A SER 173 n 173 SER 173 A GLY 174 n 174 GLY 174 A ASP 175 n 175 ASP 175 A ILE 176 n 176 ILE 176 A ASN 177 n 177 ASN 177 A ALA 178 n 178 ALA 178 A PHE 179 n 179 PHE 179 A PHE 180 n 180 PHE 180 A SER 181 n 181 SER 181 A TYR 182 n 182 TYR 182 A LEU 183 n 183 LEU 183 A THR 184 n 184 THR 184 A GLN 185 n 185 GLN 185 A ASN 186 n 186 ASN 186 A GLN 187 n 187 GLN 187 A GLY 188 n 188 GLY 188 A PHE 189 n 189 PHE 189 A PRO 190 n 190 PRO 190 A ALA 191 n 191 ALA 191 A SER 192 n 192 SER 192 A SER 193 n 193 SER 193 A GLN 194 n 194 GLN 194 A TYR 195 n 195 TYR 195 A LEU 196 n 196 LEU 196 A ILE 197 n 197 ILE 197 A ASN 198 n 198 ASN 198 A LEU 199 n 199 LEU 199 A GLN 200 n 200 GLN 200 A PHE 201 n 201 PHE 201 A GLY 202 n 202 GLY 202 A THR 203 n 203 THR 203 A GLU 204 n 204 GLU 204 A ALA 205 n 205 ALA 205 A PHE 206 n 206 PHE 206 A THR 207 n 207 THR 207 A GLY 208 n 208 GLY 208 A GLY 209 n 209 GLY 209 A PRO 210 n 210 PRO 210 A ALA 211 n 211 ALA 211 A THR 212 n 212 THR 212 A PHE 213 n 213 PHE 213 A THR 214 n 214 THR 214 A VAL 215 n 215 VAL 215 A ASP 216 n 216 ASP 216 A ASN 217 n 217 ASN 217 A TRP 218 n 218 TRP 218 A THR 219 n 219 THR 219 A ALA 220 n 220 ALA 220 A SER 221 n 221 SER 221 A VAL 222 n 222 VAL 222 A ASN 223 n 223 ASN 223 A author_defined_assembly 1 monomeric A VAL 33 A N VAL 33 1_555 A PD 226 D PD PD 1_555 A VAL 33 A O VAL 33 1_555 71.4 A GLU 116 A OE1 GLU 116 1_555 A PD 224 B PD PD 1_555 A MET 118 A SD MET 118 1_555 108.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O MET 3 A O MET 3 A N VAL 33 A N VAL 33 A O LYS 37 A O LYS 37 A N SER 44 A N SER 44 A O THR 47 A O THR 47 A N PHE 213 A N PHE 213 A O THR 214 A O THR 214 A N LYS 86 A N LYS 86 A O VAL 83 A O VAL 83 A N TYR 172 A N TYR 172 A O ASP 8 A O ASP 8 A N GLN 19 A N GLN 19 A O ASN 20 A O ASN 20 A N TYR 61 A N TYR 61 A O SER 64 A O SER 64 A N PHE 201 A N PHE 201 A O GLY 202 A O GLY 202 A N ALA 97 A N ALA 97 A O LEU 100 A O LEU 100 A N LEU 117 A N LEU 117 A O MET 118 A O MET 118 A N PHE 163 A N PHE 163 A O SER 162 A O SER 162 A N TRP 147 A N TRP 147 A O TRP 144 A O TRP 144 A N ALA 137 A N ALA 137 A N LEU 196 A N LEU 196 A O LYS 71 A O LYS 71 A O ALA 94 A O ALA 94 A N TYR 124 A N TYR 124 1 A THR 2 -92.83 32.57 1 A MET 3 -63.04 62.01 1 A PRO 13 -33.67 133.33 1 A ASN 89 95.11 96.48 1 A ASP 107 -79.44 25.73 1 A SER 112 -161.38 -117.08 1 A ASP 114 -132.41 -43.59 1 A ALA 135 -178.99 -178.89 1 A SER 193 -144.58 22.23 1 A PHE 206 -99.27 -65.78 protein_rep.param protein.top 43.4 -5.03 0.00 0.00 -5.03 0.00 10.07 0.246 0.007 0.214 0.218 0.218 2.5 30.0 1104 11142 10691 10.3 95.9 RANDOM 1 THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 33.743 0.339 0.36 0.29 5.0 0.37 0.35 2.5 30.0 34 1754 3 0 1717 0.007 1.3 27.0 0.70 1.76 1.50 3.17 2.00 2.05 2.00 3.21 2.50 0.339 0.034 0.296 2.59 100 871 971 10 10.3 90 22.9 2.5 30.0 1KS4 11142 10691 1.0 3.0 0.099 1 26.7 96.0 0.09 2.5 2.55 3.7 1 89.5 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS Aspergillus niger Endoglucanase The structure of Aspergillus niger endoglucanase-palladium complex 1 N N 2 N N 2 N N 2 N N 3 N N A GLY 23 A GLY 23 HELX_P A GLY 27 A GLY 27 5 1 5 A SER 74 A SER 74 HELX_P A VAL 76 A VAL 76 5 2 3 A ILE 176 A ILE 176 HELX_P A GLN 187 A GLN 187 1 3 12 A PRO 190 A PRO 190 HELX_P A SER 193 A SER 193 5 4 4 disulf 2.026 A CYS 4 A SG CYS 4 1_555 A CYS 32 A SG CYS 32 1_555 metalc 2.337 A VAL 33 A N VAL 33 1_555 A PD 226 D PD PD 1_555 metalc 2.371 A HIS 46 A NE2 HIS 46 1_555 A PD 225 C PD PD 1_555 metalc 2.314 A GLU 116 A OE1 GLU 116 1_555 A PD 224 B PD PD 1_555 metalc 2.129 A MET 118 A SD MET 118 1_555 A PD 224 B PD PD 1_555 metalc 2.460 A VAL 33 A O VAL 33 1_555 A PD 226 D PD PD 1_555 HYDROLASE Endoglucanase, Cellulase, Aspergillus niger, family 9, (alpha/alpha)6, HYDROLASE A PRO 13 A PRO 13 1 A PRO 14 A PRO 14 0.12 A GLY 209 A GLY 209 1 A PRO 210 A PRO 210 -0.01 O74705_ASPNG UNP 1 17 O74705 QTMCSQYDSASSPPYSVNQNLWGEYQGTGSQCVYVDKLSSSGASWHTEWTWSGGEGTVKSYSNSGVTFNKKLVSDVSSIP TSVEWKQDNTNVNADVAYDLFTAANVDHATSSGDYELMIWLARYGNIQPIGKQIATATVGGKSWEVWYGSTTQAGAEQRT YSFVSESPINSYSGDINAFFSYLTQNQGFPASSQYLINLQFGTEAFTGGPATFTVDNWTASVN 17 239 1KS4 1 223 O74705 A 1 1 223 6 9 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 2 A THR 2 A MET 3 A MET 3 A THR 28 A THR 28 A SER 39 A SER 39 A GLY 42 A GLY 42 A SER 52 A SER 52 A PRO 210 A PRO 210 A ALA 220 A ALA 220 A PRO 80 A PRO 80 A ASP 88 A ASP 88 A SER 171 A SER 171 A ASP 175 A ASP 175 A TYR 7 A TYR 7 A SER 12 A SER 12 A TYR 15 A TYR 15 A ASN 20 A ASN 20 A SER 60 A SER 60 A VAL 66 A VAL 66 A TYR 195 A TYR 195 A PHE 206 A PHE 206 A ASN 93 A ASN 93 A ALA 103 A ALA 103 A TYR 115 A TYR 115 A TRP 120 A TRP 120 A ALA 156 A ALA 156 A VAL 164 A VAL 164 A LYS 142 A LYS 142 A GLN 153 A GLN 153 A LYS 132 A LYS 132 A VAL 139 A VAL 139 A TYR 195 A TYR 195 A LEU 196 A LEU 196 A LYS 71 A LYS 71 A LEU 72 A LEU 72 A ASN 93 A ASN 93 A ALA 97 A ALA 97 A ALA 122 A ALA 122 A TYR 124 A TYR 124 BINDING SITE FOR RESIDUE PD A 224 Software 3 BINDING SITE FOR RESIDUE PD A 225 Software 2 BINDING SITE FOR RESIDUE PD A 226 Software 7 A GLU 116 A GLU 116 3 1_555 A MET 118 A MET 118 3 1_555 A GLU 204 A GLU 204 3 1_555 A TYR 34 A TYR 34 2 1_555 A HIS 46 A HIS 46 2 1_555 A GLN 1 A GLN 1 7 1_555 A THR 2 A THR 2 7 1_555 A MET 3 A MET 3 7 1_555 A CYS 4 A CYS 4 7 1_555 A CYS 32 A CYS 32 7 1_555 A VAL 33 A VAL 33 7 1_555 A TYR 34 A TYR 34 7 1_555 97 I 4 2 2