0.020790
0.000000
0.001454
0.000000
0.021882
0.000000
0.000000
0.000000
0.013420
0.00000
0.00000
0.00000
Hanzal-Bayer, M.
Renault, L.
Roversi, P.
Wittinghofer, A.
Hillig, R.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
94.00
90.00
48.100
45.700
74.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H16 N5 O14 P3
523.180
n
GUANOSINE-5'-TRIPHOSPHATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
P
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
P
N
143
N
O
N
144
N
O
N
145
N
O
N
146
N
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
R
C
N
156
N
O
N
157
R
C
Y
158
N
N
Y
159
N
C
Y
160
N
N
Y
161
N
C
N
162
N
C
N
163
N
O
N
164
N
N
N
165
N
C
N
166
N
N
N
167
N
N
Y
168
N
C
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
MG
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
sing
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
doub
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
21
2095
2106
10.1093/emboj/21.9.2095
11980706
The complex of Arl2-GTP and PDE delta: from structure to function.
2002
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
1167
1170
10.1107/S0907444901009556
Coexpression, copurification, crystallization and preliminary X-ray analysis
of a complex of Arl2-GTP and PDE delta
2001
UK
Structure
STRUE6
2005
0969-2126
8
1239
1245
10.1016/S0969-2126(00)00531-1
Structural and biochemical properties show Arl3-GDP as a distinct GTP-binding protein
2000
NE
FEBS Lett.
FEBLAL
0165
0014-5793
458
55
59
10.1016/S0014-5793(99)01117-5
The delta subunit of rod specific cyclic GMP phosphodiesterase, PDE delta,
interacts with the Arf-like protein Arl3 in a GTP specific manner
1999
10.2210/pdb1ksg/pdb
pdb_00001ksg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-02-21
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.782
1.0
ID13
ESRF
0.782
SYNCHROTRON
ESRF BEAMLINE ID13
21034.053
arf-like protein 2
S33L
1
man
polymer
17585.121
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT
3.1.4.17
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
523.180
GUANOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
57
nat
water
GMP-PDE DELTA, P17 PROTEIN
no
no
GSMGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR
NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS
AVTGEDLLPGIDWLLDDISSRVFTAD
GSMGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR
NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS
AVTGEDLLPGIDWLLDDISSRVFTAD
A
polypeptide(L)
no
no
GSMSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQ
KVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV
GSMSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQ
KVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
ARL2
10090
Mus musculus
562
Escherichia coli
B834
plasmid
pGEX KG
human
Homo
Escherichia
sample
PDE6D or PDED
9606
Homo sapiens
562
Escherichia coli
B834
plasmid
pET28a
1
2.1
40.8
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 5000 MME, HEPES, MgCl2, beta mercaptoethanol, GTP, glycerol as cryo protectant, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2002-05-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Complex of Arl2 and PDE delta, crystal form 2 (native)
Complex of Arl2 and PDE delta, crystal form 2 (SeMet)
Crystal Structure Of Murine Arl3-GDP
Structure Of The Rho Family GTP-Binding Protein Cdc42
In Complex With The Multifunctional Regulator Rhogdi
RCSB
Y
RCSB
2002-01-13
REL
REL
MG
MAGNESIUM ION
GTP
GUANOSINE-5'-TRIPHOSPHATE
HOH
water
1FZQ
ARL3-GDP, pdb entry 1fzq
PDB
experimental model
MG
2
3
MG
MG
202
A
GTP
1
4
GTP
GTP
201
A
WAT
1
5
HOH
HOH
203
A
WAT
2
5
HOH
HOH
204
A
WAT
3
5
HOH
HOH
205
A
WAT
4
5
HOH
HOH
206
A
WAT
5
5
HOH
HOH
207
A
WAT
6
5
HOH
HOH
208
A
WAT
8
5
HOH
HOH
209
A
WAT
9
5
HOH
HOH
210
A
WAT
10
5
HOH
HOH
211
A
WAT
11
5
HOH
HOH
212
A
WAT
12
5
HOH
HOH
213
A
WAT
13
5
HOH
HOH
214
A
WAT
14
5
HOH
HOH
215
A
WAT
15
5
HOH
HOH
216
A
WAT
18
5
HOH
HOH
217
A
WAT
21
5
HOH
HOH
218
A
WAT
22
5
HOH
HOH
219
A
WAT
23
5
HOH
HOH
220
A
WAT
24
5
HOH
HOH
221
A
WAT
25
5
HOH
HOH
222
A
WAT
30
5
HOH
HOH
223
A
WAT
33
5
HOH
HOH
224
A
WAT
34
5
HOH
HOH
225
A
WAT
35
5
HOH
HOH
226
A
WAT
36
5
HOH
HOH
227
A
WAT
37
5
HOH
HOH
228
A
WAT
38
5
HOH
HOH
229
A
WAT
39
5
HOH
HOH
230
A
WAT
40
5
HOH
HOH
231
A
WAT
41
5
HOH
HOH
232
A
WAT
46
5
HOH
HOH
233
A
WAT
47
5
HOH
HOH
234
A
WAT
48
5
HOH
HOH
235
A
WAT
49
5
HOH
HOH
236
A
WAT
50
5
HOH
HOH
237
A
WAT
51
5
HOH
HOH
238
A
WAT
52
5
HOH
HOH
239
A
WAT
53
5
HOH
HOH
240
A
WAT
7
5
HOH
HOH
151
B
WAT
16
5
HOH
HOH
152
B
WAT
17
5
HOH
HOH
153
B
WAT
19
5
HOH
HOH
154
B
WAT
20
5
HOH
HOH
155
B
WAT
26
5
HOH
HOH
156
B
WAT
27
5
HOH
HOH
157
B
WAT
28
5
HOH
HOH
158
B
WAT
29
5
HOH
HOH
159
B
WAT
31
5
HOH
HOH
160
B
WAT
32
5
HOH
HOH
161
B
WAT
42
5
HOH
HOH
162
B
WAT
43
5
HOH
HOH
163
B
WAT
44
5
HOH
HOH
164
B
WAT
45
5
HOH
HOH
165
B
WAT
54
5
HOH
HOH
166
B
WAT
55
5
HOH
HOH
167
B
WAT
56
5
HOH
HOH
168
B
WAT
57
5
HOH
HOH
169
B
n
1
-1
A
SER
0
n
2
SER
0
A
MET
1
n
3
MET
1
A
GLY
2
n
4
GLY
2
A
LEU
3
n
5
LEU
3
A
LEU
4
n
6
LEU
4
A
THR
5
n
7
THR
5
A
ILE
6
n
8
ILE
6
A
LEU
7
n
9
LEU
7
A
LYS
8
n
10
LYS
8
A
LYS
9
n
11
LYS
9
A
MET
10
n
12
MET
10
A
LYS
11
n
13
LYS
11
A
GLN
12
n
14
GLN
12
A
LYS
13
n
15
LYS
13
A
GLU
14
n
16
GLU
14
A
ARG
15
n
17
ARG
15
A
GLU
16
n
18
GLU
16
A
LEU
17
n
19
LEU
17
A
ARG
18
n
20
ARG
18
A
LEU
19
n
21
LEU
19
A
LEU
20
n
22
LEU
20
A
MET
21
n
23
MET
21
A
LEU
22
n
24
LEU
22
A
GLY
23
n
25
GLY
23
A
LEU
24
n
26
LEU
24
A
ASP
25
n
27
ASP
25
A
ASN
26
n
28
ASN
26
A
ALA
27
n
29
ALA
27
A
GLY
28
n
30
GLY
28
A
LYS
29
n
31
LYS
29
A
THR
30
n
32
THR
30
A
THR
31
n
33
THR
31
A
ILE
32
n
34
ILE
32
A
LEU
33
n
35
LEU
33
A
LYS
34
n
36
LYS
34
A
LYS
35
n
37
LYS
35
A
PHE
36
n
38
PHE
36
A
ASN
37
n
39
ASN
37
A
GLY
38
n
40
GLY
38
A
GLU
39
n
41
GLU
39
A
ASP
40
n
42
ASP
40
A
VAL
41
n
43
VAL
41
A
ASP
42
n
44
ASP
42
A
THR
43
n
45
THR
43
A
ILE
44
n
46
ILE
44
A
SER
45
n
47
SER
45
A
PRO
46
n
48
PRO
46
A
THR
47
n
49
THR
47
A
LEU
48
n
50
LEU
48
A
GLY
49
n
51
GLY
49
A
PHE
50
n
52
PHE
50
A
ASN
51
n
53
ASN
51
A
ILE
52
n
54
ILE
52
A
LYS
53
n
55
LYS
53
A
THR
54
n
56
THR
54
A
LEU
55
n
57
LEU
55
A
GLU
56
n
58
GLU
56
A
HIS
57
n
59
HIS
57
A
ARG
58
n
60
ARG
58
A
GLY
59
n
61
GLY
59
A
PHE
60
n
62
PHE
60
A
LYS
61
n
63
LYS
61
A
LEU
62
n
64
LEU
62
A
ASN
63
n
65
ASN
63
A
ILE
64
n
66
ILE
64
A
TRP
65
n
67
TRP
65
A
ASP
66
n
68
ASP
66
A
VAL
67
n
69
VAL
67
A
GLY
68
n
70
GLY
68
A
GLY
69
n
71
GLY
69
A
GLN
70
n
72
GLN
70
A
LYS
71
n
73
LYS
71
A
SER
72
n
74
SER
72
A
LEU
73
n
75
LEU
73
A
ARG
74
n
76
ARG
74
A
SER
75
n
77
SER
75
A
TYR
76
n
78
TYR
76
A
TRP
77
n
79
TRP
77
A
ARG
78
n
80
ARG
78
A
ASN
79
n
81
ASN
79
A
TYR
80
n
82
TYR
80
A
PHE
81
n
83
PHE
81
A
GLU
82
n
84
GLU
82
A
SER
83
n
85
SER
83
A
THR
84
n
86
THR
84
A
ASP
85
n
87
ASP
85
A
GLY
86
n
88
GLY
86
A
LEU
87
n
89
LEU
87
A
ILE
88
n
90
ILE
88
A
TRP
89
n
91
TRP
89
A
VAL
90
n
92
VAL
90
A
VAL
91
n
93
VAL
91
A
ASP
92
n
94
ASP
92
A
SER
93
n
95
SER
93
A
ALA
94
n
96
ALA
94
A
ASP
95
n
97
ASP
95
A
ARG
96
n
98
ARG
96
A
GLN
97
n
99
GLN
97
A
ARG
98
n
100
ARG
98
A
MET
99
n
101
MET
99
A
GLN
100
n
102
GLN
100
A
ASP
101
n
103
ASP
101
A
CYS
102
n
104
CYS
102
A
GLN
103
n
105
GLN
103
A
ARG
104
n
106
ARG
104
A
GLU
105
n
107
GLU
105
A
LEU
106
n
108
LEU
106
A
GLN
107
n
109
GLN
107
A
SER
108
n
110
SER
108
A
LEU
109
n
111
LEU
109
A
LEU
110
n
112
LEU
110
A
VAL
111
n
113
VAL
111
A
GLU
112
n
114
GLU
112
A
GLU
113
n
115
GLU
113
A
ARG
114
n
116
ARG
114
A
LEU
115
n
117
LEU
115
A
ALA
116
n
118
ALA
116
A
GLY
117
n
119
GLY
117
A
ALA
118
n
120
ALA
118
A
THR
119
n
121
THR
119
A
LEU
120
n
122
LEU
120
A
LEU
121
n
123
LEU
121
A
ILE
122
n
124
ILE
122
A
PHE
123
n
125
PHE
123
A
ALA
124
n
126
ALA
124
A
ASN
125
n
127
ASN
125
A
LYS
126
n
128
LYS
126
A
GLN
127
n
129
GLN
127
A
ASP
128
n
130
ASP
128
A
LEU
129
n
131
LEU
129
A
PRO
130
n
132
PRO
130
A
GLY
131
n
133
GLY
131
A
ALA
132
n
134
ALA
132
A
LEU
133
n
135
LEU
133
A
SER
134
n
136
SER
134
A
CYS
135
n
137
CYS
135
A
ASN
136
n
138
ASN
136
A
ALA
137
n
139
ALA
137
A
ILE
138
n
140
ILE
138
A
GLN
139
n
141
GLN
139
A
GLU
140
n
142
GLU
140
A
ALA
141
n
143
ALA
141
A
LEU
142
n
144
LEU
142
A
GLU
143
n
145
GLU
143
A
LEU
144
n
146
LEU
144
A
ASP
145
n
147
ASP
145
A
SER
146
n
148
SER
146
A
ILE
147
n
149
ILE
147
A
ARG
148
n
150
ARG
148
A
SER
149
n
151
SER
149
A
HIS
150
n
152
HIS
150
A
HIS
151
n
153
HIS
151
A
TRP
152
n
154
TRP
152
A
ARG
153
n
155
ARG
153
A
ILE
154
n
156
ILE
154
A
GLN
155
n
157
GLN
155
A
GLY
156
n
158
GLY
156
A
CYS
157
n
159
CYS
157
A
SER
158
n
160
SER
158
A
ALA
159
n
161
ALA
159
A
VAL
160
n
162
VAL
160
A
THR
161
n
163
THR
161
A
GLY
162
n
164
GLY
162
A
GLU
163
n
165
GLU
163
A
ASP
164
n
166
ASP
164
A
LEU
165
n
167
LEU
165
A
LEU
166
n
168
LEU
166
A
PRO
167
n
169
PRO
167
A
GLY
168
n
170
GLY
168
A
ILE
169
n
171
ILE
169
A
ASP
170
n
172
ASP
170
A
TRP
171
n
173
TRP
171
A
LEU
172
n
174
LEU
172
A
LEU
173
n
175
LEU
173
A
ASP
174
n
176
ASP
174
A
ASP
175
n
177
ASP
175
A
ILE
176
n
178
ILE
176
A
SER
177
n
179
SER
177
A
SER
178
n
180
SER
178
A
ARG
179
n
181
ARG
179
A
n
182
180
A
n
183
181
A
n
184
182
A
n
185
183
A
n
186
184
A
n
1
-1
B
n
2
0
B
n
3
1
B
n
4
2
B
n
5
3
B
LYS
4
n
6
LYS
4
B
ASP
5
n
7
ASP
5
B
GLU
6
n
8
GLU
6
B
ARG
7
n
9
ARG
7
B
ALA
8
n
10
ALA
8
B
ARG
9
n
11
ARG
9
B
GLU
10
n
12
GLU
10
B
ILE
11
n
13
ILE
11
B
LEU
12
n
14
LEU
12
B
ARG
13
n
15
ARG
13
B
GLY
14
n
16
GLY
14
B
PHE
15
n
17
PHE
15
B
LYS
16
n
18
LYS
16
B
LEU
17
n
19
LEU
17
B
ASN
18
n
20
ASN
18
B
TRP
19
n
21
TRP
19
B
MET
20
n
22
MET
20
B
ASN
21
n
23
ASN
21
B
LEU
22
n
24
LEU
22
B
ARG
23
n
25
ARG
23
B
ASP
24
n
26
ASP
24
B
ALA
25
n
27
ALA
25
B
GLU
26
n
28
GLU
26
B
THR
27
n
29
THR
27
B
GLY
28
n
30
GLY
28
B
LYS
29
n
31
LYS
29
B
ILE
30
n
32
ILE
30
B
LEU
31
n
33
LEU
31
B
TRP
32
n
34
TRP
32
B
GLN
33
n
35
GLN
33
B
GLY
34
n
36
GLY
34
B
THR
35
n
37
THR
35
B
GLU
36
n
38
GLU
36
B
ASP
37
n
39
ASP
37
B
LEU
38
n
40
LEU
38
B
SER
39
n
41
SER
39
B
VAL
40
n
42
VAL
40
B
PRO
41
n
43
PRO
41
B
GLY
42
n
44
GLY
42
B
VAL
43
n
45
VAL
43
B
GLU
44
n
46
GLU
44
B
HIS
45
n
47
HIS
45
B
GLU
46
n
48
GLU
46
B
ALA
47
n
49
ALA
47
B
ARG
48
n
50
ARG
48
B
VAL
49
n
51
VAL
49
B
PRO
50
n
52
PRO
50
B
LYS
51
n
53
LYS
51
B
LYS
52
n
54
LYS
52
B
ILE
53
n
55
ILE
53
B
LEU
54
n
56
LEU
54
B
LYS
55
n
57
LYS
55
B
CYS
56
n
58
CYS
56
B
LYS
57
n
59
LYS
57
B
ALA
58
n
60
ALA
58
B
VAL
59
n
61
VAL
59
B
SER
60
n
62
SER
60
B
ARG
61
n
63
ARG
61
B
GLU
62
n
64
GLU
62
B
LEU
63
n
65
LEU
63
B
ASN
64
n
66
ASN
64
B
PHE
65
n
67
PHE
65
B
SER
66
n
68
SER
66
B
SER
67
n
69
SER
67
B
THR
68
n
70
THR
68
B
GLU
69
n
71
GLU
69
B
GLN
70
n
72
GLN
70
B
MET
71
n
73
MET
71
B
GLU
72
n
74
GLU
72
B
LYS
73
n
75
LYS
73
B
PHE
74
n
76
PHE
74
B
ARG
75
n
77
ARG
75
B
LEU
76
n
78
LEU
76
B
GLU
77
n
79
GLU
77
B
GLN
78
n
80
GLN
78
B
LYS
79
n
81
LYS
79
B
VAL
80
n
82
VAL
80
B
TYR
81
n
83
TYR
81
B
PHE
82
n
84
PHE
82
B
LYS
83
n
85
LYS
83
B
GLY
84
n
86
GLY
84
B
GLN
85
n
87
GLN
85
B
CYS
86
n
88
CYS
86
B
LEU
87
n
89
LEU
87
B
GLU
88
n
90
GLU
88
B
GLU
89
n
91
GLU
89
B
TRP
90
n
92
TRP
90
B
PHE
91
n
93
PHE
91
B
PHE
92
n
94
PHE
92
B
GLU
93
n
95
GLU
93
B
PHE
94
n
96
PHE
94
B
GLY
95
n
97
GLY
95
B
PHE
96
n
98
PHE
96
B
VAL
97
n
99
VAL
97
B
ILE
98
n
100
ILE
98
B
PRO
99
n
101
PRO
99
B
ASN
100
n
102
ASN
100
B
SER
101
n
103
SER
101
B
THR
102
n
104
THR
102
B
ASN
103
n
105
ASN
103
B
THR
104
n
106
THR
104
B
TRP
105
n
107
TRP
105
B
GLN
106
n
108
GLN
106
B
SER
107
n
109
SER
107
B
LEU
108
n
110
LEU
108
B
ILE
109
n
111
ILE
109
B
n
112
110
B
n
113
111
B
n
114
112
B
n
115
113
B
n
116
114
B
n
117
115
B
n
118
116
B
n
119
117
B
n
120
118
B
n
121
119
B
n
122
120
B
n
123
121
B
n
124
122
B
n
125
123
B
n
126
124
B
n
127
125
B
n
128
126
B
n
129
127
B
n
130
128
B
ILE
129
n
131
ILE
129
B
GLU
130
n
132
GLU
130
B
THR
131
n
133
THR
131
B
LYS
132
n
134
LYS
132
B
PHE
133
n
135
PHE
133
B
PHE
134
n
136
PHE
134
B
ASP
135
n
137
ASP
135
B
ASP
136
n
138
ASP
136
B
ASP
137
n
139
ASP
137
B
LEU
138
n
140
LEU
138
B
LEU
139
n
141
LEU
139
B
VAL
140
n
142
VAL
140
B
SER
141
n
143
SER
141
B
THR
142
n
144
THR
142
B
SER
143
n
145
SER
143
B
ARG
144
n
146
ARG
144
B
VAL
145
n
147
VAL
145
B
ARG
146
n
148
ARG
146
B
LEU
147
n
149
LEU
147
B
PHE
148
n
150
PHE
148
B
TYR
149
n
151
TYR
149
B
VAL
150
n
152
VAL
150
B
author_defined_assembly
2
dimeric
A
THR
30
A
OG1
THR
32
1_555
A
MG
202
C
MG
MG
1_555
A
THR
47
A
OG1
THR
49
1_555
82.7
A
THR
30
A
OG1
THR
32
1_555
A
MG
202
C
MG
MG
1_555
A
GTP
201
D
O2G
GTP
1_555
163.8
A
THR
47
A
OG1
THR
49
1_555
A
MG
202
C
MG
MG
1_555
A
GTP
201
D
O2G
GTP
1_555
90.9
A
THR
30
A
OG1
THR
32
1_555
A
MG
202
C
MG
MG
1_555
A
GTP
201
D
O2B
GTP
1_555
89.5
A
THR
47
A
OG1
THR
49
1_555
A
MG
202
C
MG
MG
1_555
A
GTP
201
D
O2B
GTP
1_555
165.9
A
GTP
201
D
O2G
GTP
1_555
A
MG
202
C
MG
MG
1_555
A
GTP
201
D
O2B
GTP
1_555
93.5
A
THR
30
A
OG1
THR
32
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
95.5
A
THR
47
A
OG1
THR
49
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
91.1
A
GTP
201
D
O2G
GTP
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
99.5
A
GTP
201
D
O2B
GTP
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
101.4
A
THR
30
A
OG1
THR
32
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
210
E
O
HOH
1_555
79.2
A
THR
47
A
OG1
THR
49
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
210
E
O
HOH
1_555
88.2
A
GTP
201
D
O2G
GTP
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
210
E
O
HOH
1_555
85.8
A
GTP
201
D
O2B
GTP
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
210
E
O
HOH
1_555
78.7
A
HOH
206
E
O
HOH
1_555
A
MG
202
C
MG
MG
1_555
A
HOH
210
E
O
HOH
1_555
174.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
155
A
O
GLN
157
A
N
ILE
122
A
N
ILE
124
A
O
THR
119
A
O
THR
121
A
N
LEU
87
A
N
LEU
89
A
O
ILE
88
A
O
ILE
90
A
N
LEU
20
A
N
LEU
22
A
N
MET
21
A
N
MET
23
A
O
TRP
65
A
O
TRP
67
A
O
ASP
66
A
O
ASP
68
A
N
ASN
51
A
N
ASN
53
A
N
ILE
52
A
N
ILE
54
B
O
THR
104
B
O
THR
106
B
O
ASN
103
B
O
ASN
105
B
N
PHE
65
B
N
PHE
67
B
O
SER
66
B
O
SER
68
B
N
LYS
16
B
N
LYS
18
B
N
LEU
22
B
N
LEU
24
B
O
LEU
31
B
O
LEU
33
B
O
TRP
90
B
O
TRP
92
B
N
GLN
78
B
N
GLN
80
B
N
GLU
77
B
N
GLU
79
B
O
LYS
132
B
O
LYS
134
B
N
PHE
133
B
N
PHE
135
B
O
VAL
140
B
O
VAL
142
1
A
GLY
-1
A
GLY
1
1
Y
1
A
VAL
180
A
VAL
182
1
Y
1
A
PHE
181
A
PHE
183
1
Y
1
A
THR
182
A
THR
184
1
Y
1
A
ALA
183
A
ALA
185
1
Y
1
A
ASP
184
A
ASP
186
1
Y
1
B
GLY
-1
B
GLY
1
1
Y
1
B
SER
0
B
SER
2
1
Y
1
B
MET
1
B
MET
3
1
Y
1
B
SER
2
B
SER
4
1
Y
1
B
ALA
3
B
ALA
5
1
Y
1
B
GLU
110
B
GLU
112
1
Y
1
B
ALA
111
B
ALA
113
1
Y
1
B
ALA
112
B
ALA
114
1
Y
1
B
PRO
113
B
PRO
115
1
Y
1
B
GLU
114
B
GLU
116
1
Y
1
B
SER
115
B
SER
117
1
Y
1
B
GLN
116
B
GLN
118
1
Y
1
B
MET
117
B
MET
119
1
Y
1
B
MET
118
B
MET
120
1
Y
1
B
PRO
119
B
PRO
121
1
Y
1
B
ALA
120
B
ALA
122
1
Y
1
B
SER
121
B
SER
123
1
Y
1
B
VAL
122
B
VAL
124
1
Y
1
B
LEU
123
B
LEU
125
1
Y
1
B
THR
124
B
THR
126
1
Y
1
B
GLY
125
B
GLY
127
1
Y
1
B
ASN
126
B
ASN
128
1
Y
1
B
VAL
127
B
VAL
129
1
Y
1
B
ILE
128
B
ILE
130
1
Y
1
B
TYR
81
0.073
SIDE CHAIN
1
16.37
2.70
111.00
127.37
B
B
B
N
CA
C
ARG
ARG
ARG
48
48
48
N
1
10.63
1.50
119.30
129.93
B
B
B
C
N
CA
VAL
PRO
PRO
49
50
50
Y
1
20.04
2.70
111.00
131.04
B
B
B
N
CA
C
TYR
TYR
TYR
81
81
81
N
1
20.16
2.70
111.00
131.16
B
B
B
N
CA
C
ARG
ARG
ARG
146
146
146
N
1
30.46
2.70
111.00
141.46
B
B
B
N
CA
C
LEU
LEU
LEU
147
147
147
N
1
A
LYS
13
-96.20
30.12
1
A
GLU
39
-141.30
-34.02
1
A
ASP
40
-37.41
107.00
1
A
ASP
42
23.24
51.45
1
A
LEU
48
-105.67
45.81
1
A
LEU
55
-107.21
-139.71
1
A
GLU
56
-176.31
118.95
1
A
GLU
82
-38.60
126.11
1
A
ASP
95
-111.42
62.25
1
A
MET
99
-38.40
-34.04
1
B
ASP
5
-153.18
0.82
1
B
GLU
44
56.46
89.60
1
B
PRO
50
-23.13
110.21
1
B
LYS
52
-62.91
11.88
1
B
LYS
83
43.26
-107.87
1
B
GLN
85
-37.32
143.94
1
B
ASP
136
61.58
-108.61
PROTEIN_REP.PARAM
PROTEIN.TOP
ION.PARAM
GTP.PARAM
WATER_REP.PARAM
45.1
7.91
0.00
5.12
-3.48
0.00
-4.42
0.3010000
0.008
0.2550000
0.2600000
0.2600000
2.3
19.73
1406
14238
14238
9.9
97.4
RANDOM
901500.34
0.000000
1
RESTRAINED
THROUGHOUT
0.0
combination of Molecular Replacement and SAD phasing
ARL3-GDP, pdb entry 1fzq
Engh & Huber
FLAT MODEL
45.5746
0.369833
0.48
0.35
5.00
0.46
0.34
2.3
19.73
57
2597
33
0
2507
0.010
2.0
25.3
1.12
0.3900000
0.025
0.3140000
2.44
250
2137
6
10.5
99.2
27.9
2.3
19.7
1KSG
14251
14251
0.0
0.0
0.0650000
1
14.8
2.9
97.5
2.3
2.35
5.8
0.2350000
3.0
99.7
phasing
AMoRE
model building
ARP/wARP
phasing
SHARP
(SAD PHASING)
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
Complex of Arl2 and PDE delta, Crystal Form 1
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
The deposited coordinates represent the biological assembly
(consisting of one Arl2 molecule (bound to GDP/PO4) and one PDE delta molecule)
A
MET
1
A
MET
3
HELX_P
A
LYS
13
A
LYS
15
1
1
13
A
GLY
28
A
GLY
30
HELX_P
A
PHE
36
A
PHE
38
1
2
9
A
GLN
70
A
GLN
72
HELX_P
A
PHE
81
A
PHE
83
5
3
12
A
ARG
98
A
ARG
100
HELX_P
A
VAL
111
A
VAL
113
1
4
14
A
GLU
112
A
GLU
114
HELX_P
A
ALA
116
A
ALA
118
5
5
5
A
SER
134
A
SER
136
HELX_P
A
LEU
142
A
LEU
144
1
6
9
A
GLU
143
A
GLU
145
HELX_P
A
ILE
147
A
ILE
149
5
7
5
A
ASP
164
A
ASP
166
HELX_P
A
ARG
179
A
ARG
181
1
8
16
B
ASP
5
B
ASP
7
HELX_P
B
GLY
14
B
GLY
16
1
9
10
B
PRO
50
B
PRO
52
HELX_P
B
CYS
56
B
CYS
58
5
10
7
metalc
2.318
A
THR
30
A
OG1
THR
32
1_555
A
MG
202
C
MG
MG
1_555
metalc
2.229
A
THR
47
A
OG1
THR
49
1_555
A
MG
202
C
MG
MG
1_555
metalc
2.262
A
GTP
201
D
O2G
GTP
1_555
A
MG
202
C
MG
MG
1_555
metalc
2.170
A
GTP
201
D
O2B
GTP
1_555
A
MG
202
C
MG
MG
1_555
metalc
2.441
A
MG
202
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
metalc
2.440
A
MG
202
C
MG
MG
1_555
A
HOH
210
E
O
HOH
1_555
SIGNALING PROTEIN/HYDROLASE
small GTPase, small GTP-binding protein, Arf family, effector molecule, immunoglobuline-like fold, GDI, SIGNALING PROTEIN-HYDROLASE COMPLEX
ARL2_MOUSE
UNP
1
1
Q9D0J4
MGLLTILKKMKQKERELRLLMLGLDNAGKTTISKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNY
FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAV
TGEDLLPGIDWLLDDISSRVFTAD
PDE6D_HUMAN
UNP
2
1
O43924
MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKV
YFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV
1
184
1KSG
1
184
Q9D0J4
A
1
3
186
1
150
1KSG
1
150
O43924
B
2
3
152
1
cloning artifact
GLY
-1
1KSG
A
Q9D0J4
UNP
1
1
cloning artifact
SER
0
1KSG
A
Q9D0J4
UNP
2
1
SER
engineered mutation
LEU
33
1KSG
A
Q9D0J4
UNP
33
35
2
cloning artifact
GLY
-1
1KSG
B
O43924
UNP
1
2
cloning artifact
SER
0
1KSG
B
O43924
UNP
2
10
4
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
152
A
TRP
154
A
GLY
156
A
GLY
158
A
THR
119
A
THR
121
A
ASN
125
A
ASN
127
A
GLY
86
A
GLY
88
A
ASP
92
A
ASP
94
A
GLU
16
A
GLU
18
A
LEU
22
A
LEU
24
A
LYS
61
A
LYS
63
A
VAL
67
A
VAL
69
A
PHE
50
A
PHE
52
A
THR
54
A
THR
56
B
SER
101
B
SER
103
B
LEU
108
B
LEU
110
B
VAL
59
B
VAL
61
B
SER
67
B
SER
69
B
PHE
15
B
PHE
17
B
ASP
24
B
ASP
26
B
ILE
30
B
ILE
32
B
GLY
34
B
GLY
36
B
GLU
88
B
GLU
90
B
VAL
97
B
VAL
99
B
MET
71
B
MET
73
B
VAL
80
B
VAL
82
B
GLU
130
B
GLU
132
B
ASP
135
B
ASP
137
B
LEU
138
B
LEU
140
B
ARG
144
B
ARG
146
BINDING SITE FOR RESIDUE MG A 202
A
MG
202
Software
5
BINDING SITE FOR RESIDUE GTP A 201
A
GTP
201
Software
24
A
THR
30
A
THR
32
5
1_555
A
THR
47
A
THR
49
5
1_555
A
GTP
201
D
GTP
5
1_555
A
HOH
206
E
HOH
5
1_555
A
HOH
210
E
HOH
5
1_555
A
ASP
25
A
ASP
27
24
1_555
A
ASN
26
A
ASN
28
24
1_555
A
ALA
27
A
ALA
29
24
1_555
A
GLY
28
A
GLY
30
24
1_555
A
LYS
29
A
LYS
31
24
1_555
A
THR
30
A
THR
32
24
1_555
A
THR
31
A
THR
33
24
1_555
A
PRO
46
A
PRO
48
24
1_555
A
THR
47
A
THR
49
24
1_555
A
GLY
68
A
GLY
70
24
1_555
A
GLY
69
A
GLY
71
24
1_555
A
ASN
125
A
ASN
127
24
1_555
A
LYS
126
A
LYS
128
24
1_555
A
ASP
128
A
ASP
130
24
1_555
A
LEU
129
A
LEU
131
24
1_555
A
SER
158
A
SER
160
24
1_555
A
ALA
159
A
ALA
161
24
1_555
A
VAL
160
A
VAL
162
24
1_555
A
MG
202
C
MG
24
1_555
A
HOH
206
E
HOH
24
1_555
A
HOH
210
E
HOH
24
1_555
A
HOH
214
E
HOH
24
1_555
B
GLN
85
B
GLN
87
24
1_545
B
CYS
86
B
CYS
88
24
1_545
4
P 1 21 1