0.022314 0.000000 0.000000 0.000000 0.015215 0.000000 0.000000 0.000000 0.009616 0.00000 0.00000 0.00000 Hanzal-Bayer, M. Renault, L. Roversi, P. Wittinghofer, A. Hillig, R.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 44.815 65.726 103.990 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer C5 H11 N O3 S2 197.276 n S,S-(2-HYDROXYETHYL)THIOCYSTEINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C10 H16 N5 O14 P3 523.180 n GUANOSINE-5'-TRIPHOSPHATE non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N O N 77 N S N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N N N 85 R C N 86 N C N 87 N S N 88 N S N 89 N C N 90 N C N 91 N O N 92 N C N 93 N O N 94 N O N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 R C N 108 N C N 109 N O N 110 N C N 111 N S N 112 N O N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N P N 121 N O N 122 N O N 123 N O N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 R C N 135 N O N 136 R C Y 137 N N Y 138 N C Y 139 N N Y 140 N C N 141 N C N 142 N O N 143 N N N 144 N C N 145 N N N 146 N N Y 147 N C N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N C N 170 N O N 171 N N N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N O N 191 N O N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 N C N 204 N C N 205 N O N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N P N 213 N O N 214 N O N 215 N O N 216 N O N 217 N P N 218 N O N 219 N O N 220 N O N 221 N P N 222 N O N 223 N O N 224 N O N 225 N C N 226 R C N 227 N O N 228 S C N 229 N O N 230 R C N 231 N O N 232 R C Y 233 N N Y 234 N C Y 235 N N Y 236 N C N 237 N C N 238 N O N 239 N N N 240 N C N 241 N N N 242 N N Y 243 N C N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N N Y 267 N C Y 268 N C Y 269 N N N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N O N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 S C N 289 N C N 290 N C N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C N 311 N C N 312 N C N 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C N 333 N C N 334 N C N 335 N C N 336 N N N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N MG N 354 N N N 355 S C N 356 N C N 357 N O N 358 N O N 359 N C N 360 N C N 361 N SE N 362 N C N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N P N 398 N O N 399 N O N 400 N O N 401 N O N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C N 407 N C N 408 N C N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C N 424 N O N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 R C N 438 N O N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C Y 455 N C Y 456 N C Y 457 N C Y 458 N N Y 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N N N 478 S C N 479 N C N 480 N O N 481 N C Y 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C N 488 N O N 489 N O N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N N N 502 S C N 503 N C N 504 N O N 505 N C N 506 N C N 507 N C N 508 N O N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing Y 142 N sing Y 143 N sing Y 144 N doub N 145 N sing Y 146 N sing N 147 N sing Y 148 N doub N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing Y 238 N sing Y 239 N sing Y 240 N doub N 241 N sing Y 242 N sing N 243 N sing Y 244 N doub N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing Y 265 N sing Y 266 N doub Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing Y 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing Y 373 N doub Y 374 N sing Y 375 N sing N 376 N sing Y 377 N doub N 378 N sing Y 379 N doub N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing Y 446 N doub Y 447 N sing Y 448 N sing N 449 N sing Y 450 N doub Y 451 N sing Y 452 N sing N 453 N sing Y 454 N sing Y 455 N doub N 456 N sing Y 457 N doub N 458 N sing Y 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing Y 474 N doub Y 475 N sing Y 476 N sing N 477 N sing Y 478 N doub N 479 N sing Y 480 N doub N 481 N sing Y 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N doub N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing UK EMBO J. EMJODG 0897 0261-4189 21 2095 2106 10.1093/emboj/21.9.2095 11980706 The complex of Arl2-GTP and PDE delta: from structure to function 2002 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 57 1167 1170 10.1107/S0907444901009556 Coexpression, copurification, crystallization and preliminary X-ray analysis of a complex of Arl2-GTP and PDE delta 2001 UK Structure STRUE6 2005 0969-2126 8 1239 1245 10.1016/S0969-2126(00)00531-1 Structural and biochemical properties show Arl3-GDP as a distinct GTP-binding protein 2000 NE FEBS Lett. FEBLAL 0165 0014-5793 458 55 59 10.1016/S0014-5793(99)01117-5 The delta subunit of rod specific cyclic GMP phosphodiesterase, PDE delta, interacts with the Arf-like protein Arl3 in a GTP specific manner 1999 10.2210/pdb1ksj/pdb pdb_00001ksj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-07-09 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.964 1.0 ID13 ESRF 0.964 SYNCHROTRON ESRF BEAMLINE ID13 21297.752 arf-like protein 2 S33L 1 man polymer 17895.719 RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT 3.1.4.17 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer 523.180 GUANOSINE-5'-TRIPHOSPHATE 1 syn non-polymer 18.015 water 105 nat water GMP-PDE DELTA, P17 PROTEIN E.C.3.1.4.17 no yes GS(MSE)GLLTILKK(MSE)KQKERELRLL(MSE)LGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWD VGGQKSLRSYWRNYFESTDGLIWVVDSADRQR(MSE)QDCQRELQSLLVEERLAGATLLIFANKQDLPGALS(CME)NAI QEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD GSMGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS AVTGEDLLPGIDWLLDDISSRVFTAD A polypeptide(L) no yes GS(MSE)SAKDERAREILRGFKLNW(MSE)NLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQ (MSE)EKFRLEQKVYFKGQ(CME)LEEWFFEFGFVIPNSTNTWQSLIEAAPESQ(MSE)(MSE)PASVLTGNVIIETKFF DDDLLVSTSRVRLFYV GSMSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQ KVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample ARL2 10090 Mus musculus 562 Escherichia coli B834 plasmid pGEX KG human Homo Escherichia sample PDE6D or PDED 9606 Homo sapiens 562 Escherichia coli B834 plasmid pET28a 1 1.9 36 VAPOR DIFFUSION, HANGING DROP 7.0 PEG 5000 MME, HEPES, MgCl2, beta mercaptoethanol, GTP, PEG 400 as cryo protectant, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 software database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Refinement description Database references Derived calculations Data collection Refinement description 1 0 2002-05-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-11 1 4 2021-10-27 1 5 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Complex of Arl2 and PDE delta, crystal form 1 Complex of Arl2 and PDE delta, crystal form 2 (native) Crystal Structure Of Murine Arl3-GDP Structure Of The Rho Family GTP-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi RCSB Y RCSB 2002-01-13 REL REL PO4 PHOSPHATE ION MG MAGNESIUM ION BME BETA-MERCAPTOETHANOL GDP GUANOSINE-5'-DIPHOSPHATE GTP GUANOSINE-5'-TRIPHOSPHATE HOH water human Arf1-GppNHp, N-terminally truncated by 17 residues (J. Goldberg, Cell. 95:237-248, 1998) Other experimental model PO4 202 3 PO4 PO4 202 A MG 205 4 MG MG 205 A BME 236 5 BME BME 236 A GDP 201 6 GDP GDP 201 A GTP 203 7 GTP GTP 203 A HOH 204 8 HOH HOH 237 A HOH 1 8 HOH HOH 238 A HOH 2 8 HOH HOH 239 A HOH 3 8 HOH HOH 240 A HOH 7 8 HOH HOH 241 A HOH 10 8 HOH HOH 242 A HOH 11 8 HOH HOH 243 A HOH 12 8 HOH HOH 244 A HOH 13 8 HOH HOH 245 A HOH 18 8 HOH HOH 246 A HOH 19 8 HOH HOH 247 A HOH 21 8 HOH HOH 248 A HOH 22 8 HOH HOH 249 A HOH 23 8 HOH HOH 250 A HOH 24 8 HOH HOH 251 A HOH 25 8 HOH HOH 252 A HOH 27 8 HOH HOH 253 A HOH 29 8 HOH HOH 254 A HOH 31 8 HOH HOH 255 A HOH 33 8 HOH HOH 256 A HOH 35 8 HOH HOH 257 A HOH 36 8 HOH HOH 258 A HOH 39 8 HOH HOH 259 A HOH 40 8 HOH HOH 260 A HOH 42 8 HOH HOH 261 A HOH 43 8 HOH HOH 262 A HOH 44 8 HOH HOH 263 A HOH 45 8 HOH HOH 264 A HOH 47 8 HOH HOH 265 A HOH 52 8 HOH HOH 266 A HOH 58 8 HOH HOH 267 A HOH 59 8 HOH HOH 268 A HOH 62 8 HOH HOH 269 A HOH 67 8 HOH HOH 270 A HOH 68 8 HOH HOH 271 A HOH 69 8 HOH HOH 272 A HOH 70 8 HOH HOH 273 A HOH 74 8 HOH HOH 274 A HOH 75 8 HOH HOH 275 A HOH 77 8 HOH HOH 276 A HOH 78 8 HOH HOH 277 A HOH 81 8 HOH HOH 278 A HOH 84 8 HOH HOH 279 A HOH 87 8 HOH HOH 280 A HOH 90 8 HOH HOH 281 A HOH 92 8 HOH HOH 282 A HOH 93 8 HOH HOH 283 A HOH 100 8 HOH HOH 284 A HOH 103 8 HOH HOH 285 A HOH 104 8 HOH HOH 286 A HOH 116 8 HOH HOH 287 A HOH 118 8 HOH HOH 288 A HOH 119 8 HOH HOH 289 A HOH 125 8 HOH HOH 290 A HOH 129 8 HOH HOH 291 A HOH 130 8 HOH HOH 292 A HOH 133 8 HOH HOH 293 A HOH 4 8 HOH HOH 151 B HOH 5 8 HOH HOH 152 B HOH 6 8 HOH HOH 153 B HOH 8 8 HOH HOH 154 B HOH 9 8 HOH HOH 155 B HOH 14 8 HOH HOH 156 B HOH 15 8 HOH HOH 157 B HOH 16 8 HOH HOH 158 B HOH 17 8 HOH HOH 159 B HOH 28 8 HOH HOH 160 B HOH 32 8 HOH HOH 161 B HOH 34 8 HOH HOH 162 B HOH 37 8 HOH HOH 163 B HOH 38 8 HOH HOH 164 B HOH 41 8 HOH HOH 165 B HOH 48 8 HOH HOH 166 B HOH 49 8 HOH HOH 167 B HOH 50 8 HOH HOH 168 B HOH 51 8 HOH HOH 169 B HOH 53 8 HOH HOH 170 B HOH 56 8 HOH HOH 171 B HOH 57 8 HOH HOH 172 B HOH 71 8 HOH HOH 173 B HOH 72 8 HOH HOH 174 B HOH 73 8 HOH HOH 175 B HOH 80 8 HOH HOH 176 B HOH 82 8 HOH HOH 177 B HOH 83 8 HOH HOH 178 B HOH 85 8 HOH HOH 179 B HOH 86 8 HOH HOH 180 B HOH 88 8 HOH HOH 181 B HOH 89 8 HOH HOH 182 B HOH 91 8 HOH HOH 183 B HOH 94 8 HOH HOH 184 B HOH 95 8 HOH HOH 185 B HOH 96 8 HOH HOH 186 B HOH 98 8 HOH HOH 187 B HOH 99 8 HOH HOH 188 B HOH 101 8 HOH HOH 189 B HOH 105 8 HOH HOH 190 B HOH 107 8 HOH HOH 191 B HOH 110 8 HOH HOH 192 B HOH 115 8 HOH HOH 193 B HOH 120 8 HOH HOH 194 B HOH 122 8 HOH HOH 195 B HOH 127 8 HOH HOH 196 B HOH 128 8 HOH HOH 197 B HOH 131 8 HOH HOH 198 B n 1 -1 A n 2 0 A n 3 1 A n 4 2 A n 5 3 A n 6 4 A n 7 5 A n 8 6 A n 9 7 A n 10 8 A n 11 9 A n 12 10 A n 13 11 A n 14 12 A n 15 13 A n 16 14 A ARG 15 n 17 ARG 15 A GLU 16 n 18 GLU 16 A LEU 17 n 19 LEU 17 A ARG 18 n 20 ARG 18 A LEU 19 n 21 LEU 19 A LEU 20 n 22 LEU 20 A MSE 21 n 23 MSE 21 A LEU 22 n 24 LEU 22 A GLY 23 n 25 GLY 23 A LEU 24 n 26 LEU 24 A ASP 25 n 27 ASP 25 A ASN 26 n 28 ASN 26 A ALA 27 n 29 ALA 27 A GLY 28 n 30 GLY 28 A LYS 29 n 31 LYS 29 A THR 30 n 32 THR 30 A THR 31 n 33 THR 31 A ILE 32 n 34 ILE 32 A LEU 33 n 35 LEU 33 A LYS 34 n 36 LYS 34 A LYS 35 n 37 LYS 35 A PHE 36 n 38 PHE 36 A ASN 37 n 39 ASN 37 A GLY 38 n 40 GLY 38 A GLU 39 n 41 GLU 39 A ASP 40 n 42 ASP 40 A VAL 41 n 43 VAL 41 A ASP 42 n 44 ASP 42 A THR 43 n 45 THR 43 A ILE 44 n 46 ILE 44 A SER 45 n 47 SER 45 A PRO 46 n 48 PRO 46 A THR 47 n 49 THR 47 A LEU 48 n 50 LEU 48 A GLY 49 n 51 GLY 49 A PHE 50 n 52 PHE 50 A ASN 51 n 53 ASN 51 A ILE 52 n 54 ILE 52 A LYS 53 n 55 LYS 53 A THR 54 n 56 THR 54 A LEU 55 n 57 LEU 55 A GLU 56 n 58 GLU 56 A HIS 57 n 59 HIS 57 A ARG 58 n 60 ARG 58 A GLY 59 n 61 GLY 59 A PHE 60 n 62 PHE 60 A LYS 61 n 63 LYS 61 A LEU 62 n 64 LEU 62 A ASN 63 n 65 ASN 63 A ILE 64 n 66 ILE 64 A TRP 65 n 67 TRP 65 A ASP 66 n 68 ASP 66 A VAL 67 n 69 VAL 67 A GLY 68 n 70 GLY 68 A GLY 69 n 71 GLY 69 A GLN 70 n 72 GLN 70 A LYS 71 n 73 LYS 71 A SER 72 n 74 SER 72 A LEU 73 n 75 LEU 73 A ARG 74 n 76 ARG 74 A SER 75 n 77 SER 75 A TYR 76 n 78 TYR 76 A TRP 77 n 79 TRP 77 A ARG 78 n 80 ARG 78 A ASN 79 n 81 ASN 79 A TYR 80 n 82 TYR 80 A PHE 81 n 83 PHE 81 A GLU 82 n 84 GLU 82 A SER 83 n 85 SER 83 A THR 84 n 86 THR 84 A ASP 85 n 87 ASP 85 A GLY 86 n 88 GLY 86 A LEU 87 n 89 LEU 87 A ILE 88 n 90 ILE 88 A TRP 89 n 91 TRP 89 A VAL 90 n 92 VAL 90 A VAL 91 n 93 VAL 91 A ASP 92 n 94 ASP 92 A SER 93 n 95 SER 93 A ALA 94 n 96 ALA 94 A ASP 95 n 97 ASP 95 A ARG 96 n 98 ARG 96 A GLN 97 n 99 GLN 97 A ARG 98 n 100 ARG 98 A MSE 99 n 101 MSE 99 A GLN 100 n 102 GLN 100 A ASP 101 n 103 ASP 101 A CYS 102 n 104 CYS 102 A GLN 103 n 105 GLN 103 A ARG 104 n 106 ARG 104 A GLU 105 n 107 GLU 105 A LEU 106 n 108 LEU 106 A GLN 107 n 109 GLN 107 A SER 108 n 110 SER 108 A LEU 109 n 111 LEU 109 A LEU 110 n 112 LEU 110 A VAL 111 n 113 VAL 111 A GLU 112 n 114 GLU 112 A GLU 113 n 115 GLU 113 A ARG 114 n 116 ARG 114 A LEU 115 n 117 LEU 115 A ALA 116 n 118 ALA 116 A GLY 117 n 119 GLY 117 A ALA 118 n 120 ALA 118 A THR 119 n 121 THR 119 A LEU 120 n 122 LEU 120 A LEU 121 n 123 LEU 121 A ILE 122 n 124 ILE 122 A PHE 123 n 125 PHE 123 A ALA 124 n 126 ALA 124 A ASN 125 n 127 ASN 125 A LYS 126 n 128 LYS 126 A GLN 127 n 129 GLN 127 A ASP 128 n 130 ASP 128 A LEU 129 n 131 LEU 129 A PRO 130 n 132 PRO 130 A GLY 131 n 133 GLY 131 A ALA 132 n 134 ALA 132 A LEU 133 n 135 LEU 133 A SER 134 n 136 SER 134 A CME 135 n 137 CME 135 A ASN 136 n 138 ASN 136 A ALA 137 n 139 ALA 137 A ILE 138 n 140 ILE 138 A GLN 139 n 141 GLN 139 A GLU 140 n 142 GLU 140 A ALA 141 n 143 ALA 141 A LEU 142 n 144 LEU 142 A GLU 143 n 145 GLU 143 A LEU 144 n 146 LEU 144 A ASP 145 n 147 ASP 145 A SER 146 n 148 SER 146 A ILE 147 n 149 ILE 147 A ARG 148 n 150 ARG 148 A SER 149 n 151 SER 149 A HIS 150 n 152 HIS 150 A HIS 151 n 153 HIS 151 A TRP 152 n 154 TRP 152 A ARG 153 n 155 ARG 153 A ILE 154 n 156 ILE 154 A GLN 155 n 157 GLN 155 A GLY 156 n 158 GLY 156 A CYS 157 n 159 CYS 157 A SER 158 n 160 SER 158 A ALA 159 n 161 ALA 159 A VAL 160 n 162 VAL 160 A THR 161 n 163 THR 161 A GLY 162 n 164 GLY 162 A GLU 163 n 165 GLU 163 A ASP 164 n 166 ASP 164 A LEU 165 n 167 LEU 165 A LEU 166 n 168 LEU 166 A PRO 167 n 169 PRO 167 A GLY 168 n 170 GLY 168 A ILE 169 n 171 ILE 169 A ASP 170 n 172 ASP 170 A TRP 171 n 173 TRP 171 A LEU 172 n 174 LEU 172 A LEU 173 n 175 LEU 173 A ASP 174 n 176 ASP 174 A ASP 175 n 177 ASP 175 A ILE 176 n 178 ILE 176 A SER 177 n 179 SER 177 A SER 178 n 180 SER 178 A ARG 179 n 181 ARG 179 A n 182 180 A n 183 181 A n 184 182 A n 185 183 A n 186 184 A n 1 -1 B n 2 0 B n 3 1 B SER 2 n 4 SER 2 B ALA 3 n 5 ALA 3 B LYS 4 n 6 LYS 4 B ASP 5 n 7 ASP 5 B GLU 6 n 8 GLU 6 B ARG 7 n 9 ARG 7 B ALA 8 n 10 ALA 8 B ARG 9 n 11 ARG 9 B GLU 10 n 12 GLU 10 B ILE 11 n 13 ILE 11 B LEU 12 n 14 LEU 12 B ARG 13 n 15 ARG 13 B GLY 14 n 16 GLY 14 B PHE 15 n 17 PHE 15 B LYS 16 n 18 LYS 16 B LEU 17 n 19 LEU 17 B ASN 18 n 20 ASN 18 B TRP 19 n 21 TRP 19 B MSE 20 n 22 MSE 20 B ASN 21 n 23 ASN 21 B LEU 22 n 24 LEU 22 B ARG 23 n 25 ARG 23 B ASP 24 n 26 ASP 24 B ALA 25 n 27 ALA 25 B GLU 26 n 28 GLU 26 B THR 27 n 29 THR 27 B GLY 28 n 30 GLY 28 B LYS 29 n 31 LYS 29 B ILE 30 n 32 ILE 30 B LEU 31 n 33 LEU 31 B TRP 32 n 34 TRP 32 B GLN 33 n 35 GLN 33 B GLY 34 n 36 GLY 34 B THR 35 n 37 THR 35 B GLU 36 n 38 GLU 36 B ASP 37 n 39 ASP 37 B LEU 38 n 40 LEU 38 B SER 39 n 41 SER 39 B VAL 40 n 42 VAL 40 B PRO 41 n 43 PRO 41 B GLY 42 n 44 GLY 42 B VAL 43 n 45 VAL 43 B GLU 44 n 46 GLU 44 B HIS 45 n 47 HIS 45 B GLU 46 n 48 GLU 46 B ALA 47 n 49 ALA 47 B ARG 48 n 50 ARG 48 B VAL 49 n 51 VAL 49 B PRO 50 n 52 PRO 50 B LYS 51 n 53 LYS 51 B LYS 52 n 54 LYS 52 B ILE 53 n 55 ILE 53 B LEU 54 n 56 LEU 54 B LYS 55 n 57 LYS 55 B CYS 56 n 58 CYS 56 B LYS 57 n 59 LYS 57 B ALA 58 n 60 ALA 58 B VAL 59 n 61 VAL 59 B SER 60 n 62 SER 60 B ARG 61 n 63 ARG 61 B GLU 62 n 64 GLU 62 B LEU 63 n 65 LEU 63 B ASN 64 n 66 ASN 64 B PHE 65 n 67 PHE 65 B SER 66 n 68 SER 66 B SER 67 n 69 SER 67 B THR 68 n 70 THR 68 B GLU 69 n 71 GLU 69 B GLN 70 n 72 GLN 70 B MSE 71 n 73 MSE 71 B GLU 72 n 74 GLU 72 B LYS 73 n 75 LYS 73 B PHE 74 n 76 PHE 74 B ARG 75 n 77 ARG 75 B LEU 76 n 78 LEU 76 B GLU 77 n 79 GLU 77 B GLN 78 n 80 GLN 78 B LYS 79 n 81 LYS 79 B VAL 80 n 82 VAL 80 B TYR 81 n 83 TYR 81 B PHE 82 n 84 PHE 82 B LYS 83 n 85 LYS 83 B GLY 84 n 86 GLY 84 B GLN 85 n 87 GLN 85 B CME 86 n 88 CME 86 B LEU 87 n 89 LEU 87 B GLU 88 n 90 GLU 88 B GLU 89 n 91 GLU 89 B TRP 90 n 92 TRP 90 B PHE 91 n 93 PHE 91 B PHE 92 n 94 PHE 92 B GLU 93 n 95 GLU 93 B PHE 94 n 96 PHE 94 B GLY 95 n 97 GLY 95 B PHE 96 n 98 PHE 96 B VAL 97 n 99 VAL 97 B ILE 98 n 100 ILE 98 B PRO 99 n 101 PRO 99 B ASN 100 n 102 ASN 100 B SER 101 n 103 SER 101 B THR 102 n 104 THR 102 B ASN 103 n 105 ASN 103 B THR 104 n 106 THR 104 B TRP 105 n 107 TRP 105 B GLN 106 n 108 GLN 106 B SER 107 n 109 SER 107 B LEU 108 n 110 LEU 108 B ILE 109 n 111 ILE 109 B GLU 110 n 112 GLU 110 B n 113 111 B n 114 112 B n 115 113 B n 116 114 B n 117 115 B n 118 116 B n 119 117 B n 120 118 B PRO 119 n 121 PRO 119 B ALA 120 n 122 ALA 120 B SER 121 n 123 SER 121 B VAL 122 n 124 VAL 122 B LEU 123 n 125 LEU 123 B THR 124 n 126 THR 124 B GLY 125 n 127 GLY 125 B ASN 126 n 128 ASN 126 B VAL 127 n 129 VAL 127 B ILE 128 n 130 ILE 128 B ILE 129 n 131 ILE 129 B GLU 130 n 132 GLU 130 B THR 131 n 133 THR 131 B LYS 132 n 134 LYS 132 B PHE 133 n 135 PHE 133 B PHE 134 n 136 PHE 134 B ASP 135 n 137 ASP 135 B ASP 136 n 138 ASP 136 B ASP 137 n 139 ASP 137 B LEU 138 n 140 LEU 138 B LEU 139 n 141 LEU 139 B VAL 140 n 142 VAL 140 B SER 141 n 143 SER 141 B THR 142 n 144 THR 142 B SER 143 n 145 SER 143 B ARG 144 n 146 ARG 144 B VAL 145 n 147 VAL 145 B ARG 146 n 148 ARG 146 B LEU 147 n 149 LEU 147 B PHE 148 n 150 PHE 148 B TYR 149 n 151 TYR 149 B VAL 150 n 152 VAL 150 B author_defined_assembly 2 dimeric A THR 30 A OG1 THR 32 1_555 A MG 205 D MG MG 1_555 A THR 47 A OG1 THR 49 1_555 91.9 A THR 30 A OG1 THR 32 1_555 A MG 205 D MG MG 1_555 A GDP 201 A F O1B GDP 1_555 96.6 A THR 47 A OG1 THR 49 1_555 A MG 205 D MG MG 1_555 A GDP 201 A F O1B GDP 1_555 162.3 A THR 30 A OG1 THR 32 1_555 A MG 205 D MG MG 1_555 A PO4 202 A C O1 PO4 1_555 169.2 A THR 47 A OG1 THR 49 1_555 A MG 205 D MG MG 1_555 A PO4 202 A C O1 PO4 1_555 92.2 A GDP 201 A F O1B GDP 1_555 A MG 205 D MG MG 1_555 A PO4 202 A C O1 PO4 1_555 76.9 A THR 30 A OG1 THR 32 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2B GTP 1_555 82.0 A THR 47 A OG1 THR 49 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2B GTP 1_555 173.7 A GDP 201 A F O1B GDP 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2B GTP 1_555 20.2 A PO4 202 A C O1 PO4 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2B GTP 1_555 93.5 A THR 30 A OG1 THR 32 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2G GTP 1_555 173.8 A THR 47 A OG1 THR 49 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2G GTP 1_555 94.1 A GDP 201 A F O1B GDP 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2G GTP 1_555 78.1 A PO4 202 A C O1 PO4 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2G GTP 1_555 11.8 A GTP 203 B G O2B GTP 1_555 A MG 205 D MG MG 1_555 A GTP 203 B G O2G GTP 1_555 92.1 A THR 30 A OG1 THR 32 1_555 A MG 205 D MG MG 1_555 A HOH 239 H O HOH 1_555 92.1 A THR 47 A OG1 THR 49 1_555 A MG 205 D MG MG 1_555 A HOH 239 H O HOH 1_555 80.9 A GDP 201 A F O1B GDP 1_555 A MG 205 D MG MG 1_555 A HOH 239 H O HOH 1_555 83.2 A PO4 202 A C O1 PO4 1_555 A MG 205 D MG MG 1_555 A HOH 239 H O HOH 1_555 78.6 A GTP 203 B G O2B GTP 1_555 A MG 205 D MG MG 1_555 A HOH 239 H O HOH 1_555 97.7 A GTP 203 B G O2G GTP 1_555 A MG 205 D MG MG 1_555 A HOH 239 H O HOH 1_555 90.4 A THR 30 A OG1 THR 32 1_555 A MG 205 D MG MG 1_555 A HOH 240 H O HOH 1_555 90.9 A THR 47 A OG1 THR 49 1_555 A MG 205 D MG MG 1_555 A HOH 240 H O HOH 1_555 91.1 A GDP 201 A F O1B GDP 1_555 A MG 205 D MG MG 1_555 A HOH 240 H O HOH 1_555 104.3 A PO4 202 A C O1 PO4 1_555 A MG 205 D MG MG 1_555 A HOH 240 H O HOH 1_555 99.1 A GTP 203 B G O2B GTP 1_555 A MG 205 D MG MG 1_555 A HOH 240 H O HOH 1_555 90.5 A GTP 203 B G O2G GTP 1_555 A MG 205 D MG MG 1_555 A HOH 240 H O HOH 1_555 87.4 A HOH 239 H O HOH 1_555 A MG 205 D MG MG 1_555 A HOH 240 H O HOH 1_555 171.5 A MSE 21 SELENOMETHIONINE A MSE 23 MET A MSE 99 SELENOMETHIONINE A MSE 101 MET A CME 135 S,S-(2-HYDROXYETHYL)THIOCYSTEINE A CME 137 CYS B MSE 20 SELENOMETHIONINE B MSE 22 MET B MSE 71 SELENOMETHIONINE B MSE 73 MET B CME 86 S,S-(2-HYDROXYETHYL)THIOCYSTEINE B CME 88 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 155 A O GLN 157 A N ALA 124 A N ALA 126 A O PHE 123 A O PHE 125 A N VAL 91 A N VAL 93 A O VAL 90 A O VAL 92 A N LEU 22 A N LEU 24 A N MSE 21 A N MSE 23 A O TRP 65 A O TRP 67 A O ASP 66 A O ASP 68 A N ASN 51 A N ASN 53 A N THR 54 A N THR 56 B O GLN 106 B O GLN 108 B O ILE 109 B O ILE 111 B N VAL 59 B N VAL 61 B O SER 66 B O SER 68 B N LYS 16 B N LYS 18 B N LEU 22 B N LEU 24 B O LEU 31 B O LEU 33 B N HIS 45 B N HIS 47 B O ARG 146 B O ARG 148 B O LEU 147 B O LEU 149 B N VAL 127 B N VAL 129 B O LYS 132 B O LYS 134 B N GLU 77 B N GLU 79 B N PHE 74 B N PHE 76 B O GLY 95 B O GLY 97 1 A GLY -1 A GLY 1 1 Y 1 A SER 0 A SER 2 1 Y 1 A MSE 1 A MSE 3 1 Y 1 A GLY 2 A GLY 4 1 Y 1 A LEU 3 A LEU 5 1 Y 1 A LEU 4 A LEU 6 1 Y 1 A THR 5 A THR 7 1 Y 1 A ILE 6 A ILE 8 1 Y 1 A LEU 7 A LEU 9 1 Y 1 A LYS 8 A LYS 10 1 Y 1 A LYS 9 A LYS 11 1 Y 1 A MSE 10 A MSE 12 1 Y 1 A LYS 11 A LYS 13 1 Y 1 A GLN 12 A GLN 14 1 Y 1 A LYS 13 A LYS 15 1 Y 1 A GLU 14 A GLU 16 1 Y 1 A VAL 180 A VAL 182 1 Y 1 A PHE 181 A PHE 183 1 Y 1 A THR 182 A THR 184 1 Y 1 A ALA 183 A ALA 185 1 Y 1 A ASP 184 A ASP 186 1 Y 1 B GLY -1 B GLY 1 1 Y 1 B SER 0 B SER 2 1 Y 1 B MSE 1 B MSE 3 1 Y 1 B ALA 111 B ALA 113 1 Y 1 B ALA 112 B ALA 114 1 Y 1 B PRO 113 B PRO 115 1 Y 1 B GLU 114 B GLU 116 1 Y 1 B SER 115 B SER 117 1 Y 1 B GLN 116 B GLN 118 1 Y 1 B MSE 117 B MSE 119 1 Y 1 B MSE 118 B MSE 120 1 Y 1 B B O N GLU LEU 36 38 2.18 1 B THR 35 -13.10 1 B B THR GLU 35 36 -36.82 1 A LEU 48 -104.70 42.80 1 A ASP 95 -111.29 68.16 1 A LYS 126 73.09 32.04 1 A SER 134 -61.07 -177.92 1 B THR 35 -38.49 -80.36 1 B GLU 36 -168.00 113.00 1 B ASP 37 -21.96 63.43 1 B VAL 40 -47.96 152.90 1 B LYS 83 59.64 -120.45 1 B ASN 100 48.77 77.74 1 B ALA 120 178.80 -79.99 1 B ASP 136 68.18 -94.69 43.6 0.264 0.209 0.214 0.214 2.60 19.8 953 9910 9910 9.6 RANDOM 1 isotropic THROUGHOUT 0.0 combination of Molecular Replacement and SAD phasing human Arf1-GppNHp, N-terminally truncated by 17 residues (J. Goldberg, Cell. 95:237-248, 1998) Engh & Huber 0.227 0.00057 -0.021 2.60 19.8 105 2657 70 0 2482 0.9 0.007 0.358 0.232 2.76 141 1564 1714 56.0 2.60 19.8 1KSJ 9926 9926 0.0 0.0 0.081 1 25.1 8.7 99.6 2.60 2.65 7.0 558 0.391 1 9.6 100.0 data reduction DENZO data scaling SCALEPACK phasing AMoRE model building ARP/wARP phasing SHARP (SAD PHASING) refinement BUSTER refinement BETA VERSION Complex of Arl2 and PDE delta, Crystal Form 2 (SeMet) 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 8 N N 8 N N The deposited coordinates represent the biological assembly (consisting of one Arl2 molecule (bound to GDP/PO4) and one PDE delta molecule). A GLY 28 A GLY 30 HELX_P A ASN 37 A ASN 39 1 1 10 A GLN 70 A GLN 72 HELX_P A SER 75 A SER 77 1 2 6 A TYR 76 A TYR 78 HELX_P A PHE 81 A PHE 83 5 3 6 A ARG 98 A ARG 100 HELX_P A LEU 110 A LEU 112 1 4 13 A SER 134 A SER 136 HELX_P A LEU 142 A LEU 144 1 5 9 A LEU 165 A LEU 167 HELX_P A ARG 179 A ARG 181 1 6 15 B SER 2 B SER 4 HELX_P B GLY 14 B GLY 16 1 7 13 B PRO 50 B PRO 52 HELX_P B LYS 55 B LYS 57 5 8 6 covale 1.332 both A LEU 20 A C LEU 22 1_555 A MSE 21 A N MSE 23 1_555 covale 1.332 both A MSE 21 A C MSE 23 1_555 A LEU 22 A N LEU 24 1_555 covale 1.324 both A ARG 98 A C ARG 100 1_555 A MSE 99 A N MSE 101 1_555 covale 1.331 both A MSE 99 A C MSE 101 1_555 A GLN 100 A N GLN 102 1_555 covale 1.330 both A SER 134 A C SER 136 1_555 A CME 135 A N CME 137 1_555 covale 1.327 both A CME 135 A C CME 137 1_555 A ASN 136 A N ASN 138 1_555 covale 1.325 both B TRP 19 B C TRP 21 1_555 B MSE 20 B N MSE 22 1_555 covale 1.333 both B MSE 20 B C MSE 22 1_555 B ASN 21 B N ASN 23 1_555 covale 1.332 both B GLN 70 B C GLN 72 1_555 B MSE 71 B N MSE 73 1_555 covale 1.328 both B MSE 71 B C MSE 73 1_555 B GLU 72 B N GLU 74 1_555 covale 1.329 both B GLN 85 B C GLN 87 1_555 B CME 86 B N CME 88 1_555 covale 1.330 both B CME 86 B C CME 88 1_555 B LEU 87 B N LEU 89 1_555 metalc 2.031 A THR 30 A OG1 THR 32 1_555 A MG 205 D MG MG 1_555 metalc 2.018 A THR 47 A OG1 THR 49 1_555 A MG 205 D MG MG 1_555 metalc 2.291 A A GDP 201 F O1B GDP 1_555 A MG 205 D MG MG 1_555 metalc 1.816 A A PO4 202 C O1 PO4 1_555 A MG 205 D MG MG 1_555 metalc 2.135 B A GTP 203 G O2B GTP 1_555 A MG 205 D MG MG 1_555 metalc 2.089 B A GTP 203 G O2G GTP 1_555 A MG 205 D MG MG 1_555 metalc 2.162 A MG 205 D MG MG 1_555 A HOH 239 H O HOH 1_555 metalc 2.175 A MG 205 D MG MG 1_555 A HOH 240 H O HOH 1_555 SIGNALING PROTEIN/HYDROLASE small GTPase, small GTP-binding protein, Arf family, effector molecule, immunoglobuline-like fold, GDI, SIGNALING PROTEIN-HYDROLASE COMPLEX ARL2_MOUSE UNP 1 1 Q9D0J4 MGLLTILKKMKQKERELRLLMLGLDNAGKTTISKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNY FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAV TGEDLLPGIDWLLDDISSRVFTAD PDE6D_HUMAN UNP 2 1 O43924 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKV YFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV 1 184 1KSJ 1 184 Q9D0J4 A 1 3 186 1 150 1KSJ 1 150 O43924 B 2 3 152 1 cloning artifact GLY -1 1KSJ A Q9D0J4 UNP 1 1 cloning artifact SER 0 1KSJ A Q9D0J4 UNP 2 1 SER engineered mutation LEU 33 1KSJ A Q9D0J4 UNP 33 35 2 cloning artifact GLY -1 1KSJ B O43924 UNP 1 2 cloning artifact SER 0 1KSJ B O43924 UNP 2 10 5 parallel parallel parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A TRP 152 A TRP 154 A GLY 156 A GLY 158 A THR 119 A THR 121 A ASN 125 A ASN 127 A GLY 86 A GLY 88 A ASP 92 A ASP 94 A LEU 17 A LEU 19 A GLY 23 A GLY 25 A PHE 60 A PHE 62 A VAL 67 A VAL 69 A PHE 50 A PHE 52 A HIS 57 A HIS 59 B SER 101 B SER 103 B ILE 109 B ILE 111 B VAL 59 B VAL 61 B SER 67 B SER 69 B PHE 15 B PHE 17 B ASP 24 B ASP 26 B LYS 29 B LYS 31 B GLN 33 B GLN 35 B HIS 45 B HIS 47 B VAL 49 B VAL 51 B LEU 138 B LEU 140 B TYR 149 B TYR 151 B VAL 127 B VAL 129 B ASP 135 B ASP 137 B MSE 71 B MSE 73 B PHE 82 B PHE 84 B GLN 85 B GLN 87 B VAL 97 B VAL 99 BINDING SITE FOR RESIDUE PO4 A 202 A PO4 202 Software 9 BINDING SITE FOR RESIDUE MG A 205 A MG 205 Software 7 BINDING SITE FOR RESIDUE BME A 236 A BME 236 Software 8 BINDING SITE FOR RESIDUE GDP A 201 A GDP 201 Software 22 BINDING SITE FOR RESIDUE GTP A 203 A GTP 203 Software 25 A ASN 26 A ASN 28 9 1_555 A LYS 29 A LYS 31 9 1_555 A THR 47 A THR 49 9 1_555 A GLY 69 A GLY 71 9 1_555 A GDP 201 F GDP 9 1_555 A MG 205 D MG 9 1_555 A HOH 239 H HOH 9 1_555 A HOH 240 H HOH 9 1_555 A HOH 245 H HOH 9 1_555 A THR 30 A THR 32 7 1_555 A THR 47 A THR 49 7 1_555 A GDP 201 F GDP 7 1_555 A PO4 202 C PO4 7 1_555 A GTP 203 G GTP 7 1_555 A HOH 239 H HOH 7 1_555 A HOH 240 H HOH 7 1_555 A LEU 24 A LEU 26 8 1_555 A VAL 91 A VAL 93 8 1_555 A ASP 92 A ASP 94 8 1_555 A ASP 95 A ASP 97 8 1_555 A MSE 99 A MSE 101 8 1_555 A CYS 102 A CYS 104 8 1_555 A HOH 247 H HOH 8 1_555 A HOH 248 H HOH 8 1_555 A LEU 24 A LEU 26 22 1_555 A ASP 25 A ASP 27 22 1_555 A ASN 26 A ASN 28 22 1_555 A ALA 27 A ALA 29 22 1_555 A GLY 28 A GLY 30 22 1_555 A LYS 29 A LYS 31 22 1_555 A THR 30 A THR 32 22 1_555 A THR 31 A THR 33 22 1_555 A ILE 44 A ILE 46 22 1_555 A ASN 125 A ASN 127 22 1_555 A LYS 126 A LYS 128 22 1_555 A ASP 128 A ASP 130 22 1_555 A SER 158 A SER 160 22 1_555 A ALA 159 A ALA 161 22 1_555 A VAL 160 A VAL 162 22 1_555 A PO4 202 C PO4 22 1_555 A MG 205 D MG 22 1_555 A HOH 239 H HOH 22 1_555 A HOH 240 H HOH 22 1_555 A HOH 266 H HOH 22 1_555 B GLY 84 B GLY 86 22 1_455 B CME 86 B CME 88 22 1_455 A ASP 25 A ASP 27 25 1_555 A ASN 26 A ASN 28 25 1_555 A ALA 27 A ALA 29 25 1_555 A GLY 28 A GLY 30 25 1_555 A LYS 29 A LYS 31 25 1_555 A THR 30 A THR 32 25 1_555 A THR 31 A THR 33 25 1_555 A ILE 44 A ILE 46 25 1_555 A PRO 46 A PRO 48 25 1_555 A THR 47 A THR 49 25 1_555 A GLY 69 A GLY 71 25 1_555 A ASN 125 A ASN 127 25 1_555 A LYS 126 A LYS 128 25 1_555 A ASP 128 A ASP 130 25 1_555 A LEU 129 A LEU 131 25 1_555 A SER 158 A SER 160 25 1_555 A ALA 159 A ALA 161 25 1_555 A VAL 160 A VAL 162 25 1_555 A MG 205 D MG 25 1_555 A HOH 239 H HOH 25 1_555 A HOH 240 H HOH 25 1_555 A HOH 245 H HOH 25 1_555 B TYR 81 B TYR 83 25 1_455 B GLY 84 B GLY 86 25 1_455 B CME 86 B CME 88 25 1_455 19 orthorhombic P 21 21 21