0.022314
0.000000
0.000000
0.000000
0.015215
0.000000
0.000000
0.000000
0.009616
0.00000
0.00000
0.00000
Hanzal-Bayer, M.
Renault, L.
Roversi, P.
Wittinghofer, A.
Hillig, R.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
44.815
65.726
103.990
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C5 H11 N O3 S2
197.276
n
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H16 N5 O14 P3
523.180
n
GUANOSINE-5'-TRIPHOSPHATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
S
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
R
C
N
86
N
C
N
87
N
S
N
88
N
S
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
O
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
R
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
S
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
P
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
R
C
N
135
N
O
N
136
R
C
Y
137
N
N
Y
138
N
C
Y
139
N
N
Y
140
N
C
N
141
N
C
N
142
N
O
N
143
N
N
N
144
N
C
N
145
N
N
N
146
N
N
Y
147
N
C
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
P
N
213
N
O
N
214
N
O
N
215
N
O
N
216
N
O
N
217
N
P
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
P
N
222
N
O
N
223
N
O
N
224
N
O
N
225
N
C
N
226
R
C
N
227
N
O
N
228
S
C
N
229
N
O
N
230
R
C
N
231
N
O
N
232
R
C
Y
233
N
N
Y
234
N
C
Y
235
N
N
Y
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
C
N
241
N
N
N
242
N
N
Y
243
N
C
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
N
Y
267
N
C
Y
268
N
C
Y
269
N
N
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
S
C
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
N
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
MG
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
SE
N
362
N
C
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
P
N
398
N
O
N
399
N
O
N
400
N
O
N
401
N
O
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
N
424
N
O
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
R
C
N
438
N
O
N
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
N
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
N
488
N
O
N
489
N
O
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
N
506
N
C
N
507
N
C
N
508
N
O
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
Y
142
N
sing
Y
143
N
sing
Y
144
N
doub
N
145
N
sing
Y
146
N
sing
N
147
N
sing
Y
148
N
doub
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
Y
238
N
sing
Y
239
N
sing
Y
240
N
doub
N
241
N
sing
Y
242
N
sing
N
243
N
sing
Y
244
N
doub
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
sing
Y
266
N
doub
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
Y
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
Y
446
N
doub
Y
447
N
sing
Y
448
N
sing
N
449
N
sing
Y
450
N
doub
Y
451
N
sing
Y
452
N
sing
N
453
N
sing
Y
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
doub
N
458
N
sing
Y
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
Y
474
N
doub
Y
475
N
sing
Y
476
N
sing
N
477
N
sing
Y
478
N
doub
N
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
doub
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
21
2095
2106
10.1093/emboj/21.9.2095
11980706
The complex of Arl2-GTP and PDE delta: from structure to function
2002
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
1167
1170
10.1107/S0907444901009556
Coexpression, copurification, crystallization and preliminary X-ray analysis
of a complex of Arl2-GTP and PDE delta
2001
UK
Structure
STRUE6
2005
0969-2126
8
1239
1245
10.1016/S0969-2126(00)00531-1
Structural and biochemical properties show Arl3-GDP as a distinct GTP-binding protein
2000
NE
FEBS Lett.
FEBLAL
0165
0014-5793
458
55
59
10.1016/S0014-5793(99)01117-5
The delta subunit of rod specific cyclic GMP phosphodiesterase, PDE delta,
interacts with the Arf-like protein Arl3 in a GTP specific manner
1999
10.2210/pdb1ksj/pdb
pdb_00001ksj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-07-09
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.964
1.0
ID13
ESRF
0.964
SYNCHROTRON
ESRF BEAMLINE ID13
21297.752
arf-like protein 2
S33L
1
man
polymer
17895.719
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT
3.1.4.17
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
523.180
GUANOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
105
nat
water
GMP-PDE DELTA, P17 PROTEIN
E.C.3.1.4.17
no
yes
GS(MSE)GLLTILKK(MSE)KQKERELRLL(MSE)LGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWD
VGGQKSLRSYWRNYFESTDGLIWVVDSADRQR(MSE)QDCQRELQSLLVEERLAGATLLIFANKQDLPGALS(CME)NAI
QEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD
GSMGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR
NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS
AVTGEDLLPGIDWLLDDISSRVFTAD
A
polypeptide(L)
no
yes
GS(MSE)SAKDERAREILRGFKLNW(MSE)NLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQ
(MSE)EKFRLEQKVYFKGQ(CME)LEEWFFEFGFVIPNSTNTWQSLIEAAPESQ(MSE)(MSE)PASVLTGNVIIETKFF
DDDLLVSTSRVRLFYV
GSMSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQ
KVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
ARL2
10090
Mus musculus
562
Escherichia coli
B834
plasmid
pGEX KG
human
Homo
Escherichia
sample
PDE6D or PDED
9606
Homo sapiens
562
Escherichia coli
B834
plasmid
pET28a
1
1.9
36
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 5000 MME, HEPES, MgCl2, beta mercaptoethanol, GTP, PEG 400 as cryo protectant, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2002-05-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-10-27
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Complex of Arl2 and PDE delta, crystal form 1
Complex of Arl2 and PDE delta, crystal form 2 (native)
Crystal Structure Of Murine Arl3-GDP
Structure Of The Rho Family GTP-Binding Protein Cdc42
In Complex With The Multifunctional Regulator Rhogdi
RCSB
Y
RCSB
2002-01-13
REL
REL
PO4
PHOSPHATE ION
MG
MAGNESIUM ION
BME
BETA-MERCAPTOETHANOL
GDP
GUANOSINE-5'-DIPHOSPHATE
GTP
GUANOSINE-5'-TRIPHOSPHATE
HOH
water
human Arf1-GppNHp, N-terminally truncated by 17 residues (J. Goldberg, Cell. 95:237-248, 1998)
Other
experimental model
PO4
202
3
PO4
PO4
202
A
MG
205
4
MG
MG
205
A
BME
236
5
BME
BME
236
A
GDP
201
6
GDP
GDP
201
A
GTP
203
7
GTP
GTP
203
A
HOH
204
8
HOH
HOH
237
A
HOH
1
8
HOH
HOH
238
A
HOH
2
8
HOH
HOH
239
A
HOH
3
8
HOH
HOH
240
A
HOH
7
8
HOH
HOH
241
A
HOH
10
8
HOH
HOH
242
A
HOH
11
8
HOH
HOH
243
A
HOH
12
8
HOH
HOH
244
A
HOH
13
8
HOH
HOH
245
A
HOH
18
8
HOH
HOH
246
A
HOH
19
8
HOH
HOH
247
A
HOH
21
8
HOH
HOH
248
A
HOH
22
8
HOH
HOH
249
A
HOH
23
8
HOH
HOH
250
A
HOH
24
8
HOH
HOH
251
A
HOH
25
8
HOH
HOH
252
A
HOH
27
8
HOH
HOH
253
A
HOH
29
8
HOH
HOH
254
A
HOH
31
8
HOH
HOH
255
A
HOH
33
8
HOH
HOH
256
A
HOH
35
8
HOH
HOH
257
A
HOH
36
8
HOH
HOH
258
A
HOH
39
8
HOH
HOH
259
A
HOH
40
8
HOH
HOH
260
A
HOH
42
8
HOH
HOH
261
A
HOH
43
8
HOH
HOH
262
A
HOH
44
8
HOH
HOH
263
A
HOH
45
8
HOH
HOH
264
A
HOH
47
8
HOH
HOH
265
A
HOH
52
8
HOH
HOH
266
A
HOH
58
8
HOH
HOH
267
A
HOH
59
8
HOH
HOH
268
A
HOH
62
8
HOH
HOH
269
A
HOH
67
8
HOH
HOH
270
A
HOH
68
8
HOH
HOH
271
A
HOH
69
8
HOH
HOH
272
A
HOH
70
8
HOH
HOH
273
A
HOH
74
8
HOH
HOH
274
A
HOH
75
8
HOH
HOH
275
A
HOH
77
8
HOH
HOH
276
A
HOH
78
8
HOH
HOH
277
A
HOH
81
8
HOH
HOH
278
A
HOH
84
8
HOH
HOH
279
A
HOH
87
8
HOH
HOH
280
A
HOH
90
8
HOH
HOH
281
A
HOH
92
8
HOH
HOH
282
A
HOH
93
8
HOH
HOH
283
A
HOH
100
8
HOH
HOH
284
A
HOH
103
8
HOH
HOH
285
A
HOH
104
8
HOH
HOH
286
A
HOH
116
8
HOH
HOH
287
A
HOH
118
8
HOH
HOH
288
A
HOH
119
8
HOH
HOH
289
A
HOH
125
8
HOH
HOH
290
A
HOH
129
8
HOH
HOH
291
A
HOH
130
8
HOH
HOH
292
A
HOH
133
8
HOH
HOH
293
A
HOH
4
8
HOH
HOH
151
B
HOH
5
8
HOH
HOH
152
B
HOH
6
8
HOH
HOH
153
B
HOH
8
8
HOH
HOH
154
B
HOH
9
8
HOH
HOH
155
B
HOH
14
8
HOH
HOH
156
B
HOH
15
8
HOH
HOH
157
B
HOH
16
8
HOH
HOH
158
B
HOH
17
8
HOH
HOH
159
B
HOH
28
8
HOH
HOH
160
B
HOH
32
8
HOH
HOH
161
B
HOH
34
8
HOH
HOH
162
B
HOH
37
8
HOH
HOH
163
B
HOH
38
8
HOH
HOH
164
B
HOH
41
8
HOH
HOH
165
B
HOH
48
8
HOH
HOH
166
B
HOH
49
8
HOH
HOH
167
B
HOH
50
8
HOH
HOH
168
B
HOH
51
8
HOH
HOH
169
B
HOH
53
8
HOH
HOH
170
B
HOH
56
8
HOH
HOH
171
B
HOH
57
8
HOH
HOH
172
B
HOH
71
8
HOH
HOH
173
B
HOH
72
8
HOH
HOH
174
B
HOH
73
8
HOH
HOH
175
B
HOH
80
8
HOH
HOH
176
B
HOH
82
8
HOH
HOH
177
B
HOH
83
8
HOH
HOH
178
B
HOH
85
8
HOH
HOH
179
B
HOH
86
8
HOH
HOH
180
B
HOH
88
8
HOH
HOH
181
B
HOH
89
8
HOH
HOH
182
B
HOH
91
8
HOH
HOH
183
B
HOH
94
8
HOH
HOH
184
B
HOH
95
8
HOH
HOH
185
B
HOH
96
8
HOH
HOH
186
B
HOH
98
8
HOH
HOH
187
B
HOH
99
8
HOH
HOH
188
B
HOH
101
8
HOH
HOH
189
B
HOH
105
8
HOH
HOH
190
B
HOH
107
8
HOH
HOH
191
B
HOH
110
8
HOH
HOH
192
B
HOH
115
8
HOH
HOH
193
B
HOH
120
8
HOH
HOH
194
B
HOH
122
8
HOH
HOH
195
B
HOH
127
8
HOH
HOH
196
B
HOH
128
8
HOH
HOH
197
B
HOH
131
8
HOH
HOH
198
B
n
1
-1
A
n
2
0
A
n
3
1
A
n
4
2
A
n
5
3
A
n
6
4
A
n
7
5
A
n
8
6
A
n
9
7
A
n
10
8
A
n
11
9
A
n
12
10
A
n
13
11
A
n
14
12
A
n
15
13
A
n
16
14
A
ARG
15
n
17
ARG
15
A
GLU
16
n
18
GLU
16
A
LEU
17
n
19
LEU
17
A
ARG
18
n
20
ARG
18
A
LEU
19
n
21
LEU
19
A
LEU
20
n
22
LEU
20
A
MSE
21
n
23
MSE
21
A
LEU
22
n
24
LEU
22
A
GLY
23
n
25
GLY
23
A
LEU
24
n
26
LEU
24
A
ASP
25
n
27
ASP
25
A
ASN
26
n
28
ASN
26
A
ALA
27
n
29
ALA
27
A
GLY
28
n
30
GLY
28
A
LYS
29
n
31
LYS
29
A
THR
30
n
32
THR
30
A
THR
31
n
33
THR
31
A
ILE
32
n
34
ILE
32
A
LEU
33
n
35
LEU
33
A
LYS
34
n
36
LYS
34
A
LYS
35
n
37
LYS
35
A
PHE
36
n
38
PHE
36
A
ASN
37
n
39
ASN
37
A
GLY
38
n
40
GLY
38
A
GLU
39
n
41
GLU
39
A
ASP
40
n
42
ASP
40
A
VAL
41
n
43
VAL
41
A
ASP
42
n
44
ASP
42
A
THR
43
n
45
THR
43
A
ILE
44
n
46
ILE
44
A
SER
45
n
47
SER
45
A
PRO
46
n
48
PRO
46
A
THR
47
n
49
THR
47
A
LEU
48
n
50
LEU
48
A
GLY
49
n
51
GLY
49
A
PHE
50
n
52
PHE
50
A
ASN
51
n
53
ASN
51
A
ILE
52
n
54
ILE
52
A
LYS
53
n
55
LYS
53
A
THR
54
n
56
THR
54
A
LEU
55
n
57
LEU
55
A
GLU
56
n
58
GLU
56
A
HIS
57
n
59
HIS
57
A
ARG
58
n
60
ARG
58
A
GLY
59
n
61
GLY
59
A
PHE
60
n
62
PHE
60
A
LYS
61
n
63
LYS
61
A
LEU
62
n
64
LEU
62
A
ASN
63
n
65
ASN
63
A
ILE
64
n
66
ILE
64
A
TRP
65
n
67
TRP
65
A
ASP
66
n
68
ASP
66
A
VAL
67
n
69
VAL
67
A
GLY
68
n
70
GLY
68
A
GLY
69
n
71
GLY
69
A
GLN
70
n
72
GLN
70
A
LYS
71
n
73
LYS
71
A
SER
72
n
74
SER
72
A
LEU
73
n
75
LEU
73
A
ARG
74
n
76
ARG
74
A
SER
75
n
77
SER
75
A
TYR
76
n
78
TYR
76
A
TRP
77
n
79
TRP
77
A
ARG
78
n
80
ARG
78
A
ASN
79
n
81
ASN
79
A
TYR
80
n
82
TYR
80
A
PHE
81
n
83
PHE
81
A
GLU
82
n
84
GLU
82
A
SER
83
n
85
SER
83
A
THR
84
n
86
THR
84
A
ASP
85
n
87
ASP
85
A
GLY
86
n
88
GLY
86
A
LEU
87
n
89
LEU
87
A
ILE
88
n
90
ILE
88
A
TRP
89
n
91
TRP
89
A
VAL
90
n
92
VAL
90
A
VAL
91
n
93
VAL
91
A
ASP
92
n
94
ASP
92
A
SER
93
n
95
SER
93
A
ALA
94
n
96
ALA
94
A
ASP
95
n
97
ASP
95
A
ARG
96
n
98
ARG
96
A
GLN
97
n
99
GLN
97
A
ARG
98
n
100
ARG
98
A
MSE
99
n
101
MSE
99
A
GLN
100
n
102
GLN
100
A
ASP
101
n
103
ASP
101
A
CYS
102
n
104
CYS
102
A
GLN
103
n
105
GLN
103
A
ARG
104
n
106
ARG
104
A
GLU
105
n
107
GLU
105
A
LEU
106
n
108
LEU
106
A
GLN
107
n
109
GLN
107
A
SER
108
n
110
SER
108
A
LEU
109
n
111
LEU
109
A
LEU
110
n
112
LEU
110
A
VAL
111
n
113
VAL
111
A
GLU
112
n
114
GLU
112
A
GLU
113
n
115
GLU
113
A
ARG
114
n
116
ARG
114
A
LEU
115
n
117
LEU
115
A
ALA
116
n
118
ALA
116
A
GLY
117
n
119
GLY
117
A
ALA
118
n
120
ALA
118
A
THR
119
n
121
THR
119
A
LEU
120
n
122
LEU
120
A
LEU
121
n
123
LEU
121
A
ILE
122
n
124
ILE
122
A
PHE
123
n
125
PHE
123
A
ALA
124
n
126
ALA
124
A
ASN
125
n
127
ASN
125
A
LYS
126
n
128
LYS
126
A
GLN
127
n
129
GLN
127
A
ASP
128
n
130
ASP
128
A
LEU
129
n
131
LEU
129
A
PRO
130
n
132
PRO
130
A
GLY
131
n
133
GLY
131
A
ALA
132
n
134
ALA
132
A
LEU
133
n
135
LEU
133
A
SER
134
n
136
SER
134
A
CME
135
n
137
CME
135
A
ASN
136
n
138
ASN
136
A
ALA
137
n
139
ALA
137
A
ILE
138
n
140
ILE
138
A
GLN
139
n
141
GLN
139
A
GLU
140
n
142
GLU
140
A
ALA
141
n
143
ALA
141
A
LEU
142
n
144
LEU
142
A
GLU
143
n
145
GLU
143
A
LEU
144
n
146
LEU
144
A
ASP
145
n
147
ASP
145
A
SER
146
n
148
SER
146
A
ILE
147
n
149
ILE
147
A
ARG
148
n
150
ARG
148
A
SER
149
n
151
SER
149
A
HIS
150
n
152
HIS
150
A
HIS
151
n
153
HIS
151
A
TRP
152
n
154
TRP
152
A
ARG
153
n
155
ARG
153
A
ILE
154
n
156
ILE
154
A
GLN
155
n
157
GLN
155
A
GLY
156
n
158
GLY
156
A
CYS
157
n
159
CYS
157
A
SER
158
n
160
SER
158
A
ALA
159
n
161
ALA
159
A
VAL
160
n
162
VAL
160
A
THR
161
n
163
THR
161
A
GLY
162
n
164
GLY
162
A
GLU
163
n
165
GLU
163
A
ASP
164
n
166
ASP
164
A
LEU
165
n
167
LEU
165
A
LEU
166
n
168
LEU
166
A
PRO
167
n
169
PRO
167
A
GLY
168
n
170
GLY
168
A
ILE
169
n
171
ILE
169
A
ASP
170
n
172
ASP
170
A
TRP
171
n
173
TRP
171
A
LEU
172
n
174
LEU
172
A
LEU
173
n
175
LEU
173
A
ASP
174
n
176
ASP
174
A
ASP
175
n
177
ASP
175
A
ILE
176
n
178
ILE
176
A
SER
177
n
179
SER
177
A
SER
178
n
180
SER
178
A
ARG
179
n
181
ARG
179
A
n
182
180
A
n
183
181
A
n
184
182
A
n
185
183
A
n
186
184
A
n
1
-1
B
n
2
0
B
n
3
1
B
SER
2
n
4
SER
2
B
ALA
3
n
5
ALA
3
B
LYS
4
n
6
LYS
4
B
ASP
5
n
7
ASP
5
B
GLU
6
n
8
GLU
6
B
ARG
7
n
9
ARG
7
B
ALA
8
n
10
ALA
8
B
ARG
9
n
11
ARG
9
B
GLU
10
n
12
GLU
10
B
ILE
11
n
13
ILE
11
B
LEU
12
n
14
LEU
12
B
ARG
13
n
15
ARG
13
B
GLY
14
n
16
GLY
14
B
PHE
15
n
17
PHE
15
B
LYS
16
n
18
LYS
16
B
LEU
17
n
19
LEU
17
B
ASN
18
n
20
ASN
18
B
TRP
19
n
21
TRP
19
B
MSE
20
n
22
MSE
20
B
ASN
21
n
23
ASN
21
B
LEU
22
n
24
LEU
22
B
ARG
23
n
25
ARG
23
B
ASP
24
n
26
ASP
24
B
ALA
25
n
27
ALA
25
B
GLU
26
n
28
GLU
26
B
THR
27
n
29
THR
27
B
GLY
28
n
30
GLY
28
B
LYS
29
n
31
LYS
29
B
ILE
30
n
32
ILE
30
B
LEU
31
n
33
LEU
31
B
TRP
32
n
34
TRP
32
B
GLN
33
n
35
GLN
33
B
GLY
34
n
36
GLY
34
B
THR
35
n
37
THR
35
B
GLU
36
n
38
GLU
36
B
ASP
37
n
39
ASP
37
B
LEU
38
n
40
LEU
38
B
SER
39
n
41
SER
39
B
VAL
40
n
42
VAL
40
B
PRO
41
n
43
PRO
41
B
GLY
42
n
44
GLY
42
B
VAL
43
n
45
VAL
43
B
GLU
44
n
46
GLU
44
B
HIS
45
n
47
HIS
45
B
GLU
46
n
48
GLU
46
B
ALA
47
n
49
ALA
47
B
ARG
48
n
50
ARG
48
B
VAL
49
n
51
VAL
49
B
PRO
50
n
52
PRO
50
B
LYS
51
n
53
LYS
51
B
LYS
52
n
54
LYS
52
B
ILE
53
n
55
ILE
53
B
LEU
54
n
56
LEU
54
B
LYS
55
n
57
LYS
55
B
CYS
56
n
58
CYS
56
B
LYS
57
n
59
LYS
57
B
ALA
58
n
60
ALA
58
B
VAL
59
n
61
VAL
59
B
SER
60
n
62
SER
60
B
ARG
61
n
63
ARG
61
B
GLU
62
n
64
GLU
62
B
LEU
63
n
65
LEU
63
B
ASN
64
n
66
ASN
64
B
PHE
65
n
67
PHE
65
B
SER
66
n
68
SER
66
B
SER
67
n
69
SER
67
B
THR
68
n
70
THR
68
B
GLU
69
n
71
GLU
69
B
GLN
70
n
72
GLN
70
B
MSE
71
n
73
MSE
71
B
GLU
72
n
74
GLU
72
B
LYS
73
n
75
LYS
73
B
PHE
74
n
76
PHE
74
B
ARG
75
n
77
ARG
75
B
LEU
76
n
78
LEU
76
B
GLU
77
n
79
GLU
77
B
GLN
78
n
80
GLN
78
B
LYS
79
n
81
LYS
79
B
VAL
80
n
82
VAL
80
B
TYR
81
n
83
TYR
81
B
PHE
82
n
84
PHE
82
B
LYS
83
n
85
LYS
83
B
GLY
84
n
86
GLY
84
B
GLN
85
n
87
GLN
85
B
CME
86
n
88
CME
86
B
LEU
87
n
89
LEU
87
B
GLU
88
n
90
GLU
88
B
GLU
89
n
91
GLU
89
B
TRP
90
n
92
TRP
90
B
PHE
91
n
93
PHE
91
B
PHE
92
n
94
PHE
92
B
GLU
93
n
95
GLU
93
B
PHE
94
n
96
PHE
94
B
GLY
95
n
97
GLY
95
B
PHE
96
n
98
PHE
96
B
VAL
97
n
99
VAL
97
B
ILE
98
n
100
ILE
98
B
PRO
99
n
101
PRO
99
B
ASN
100
n
102
ASN
100
B
SER
101
n
103
SER
101
B
THR
102
n
104
THR
102
B
ASN
103
n
105
ASN
103
B
THR
104
n
106
THR
104
B
TRP
105
n
107
TRP
105
B
GLN
106
n
108
GLN
106
B
SER
107
n
109
SER
107
B
LEU
108
n
110
LEU
108
B
ILE
109
n
111
ILE
109
B
GLU
110
n
112
GLU
110
B
n
113
111
B
n
114
112
B
n
115
113
B
n
116
114
B
n
117
115
B
n
118
116
B
n
119
117
B
n
120
118
B
PRO
119
n
121
PRO
119
B
ALA
120
n
122
ALA
120
B
SER
121
n
123
SER
121
B
VAL
122
n
124
VAL
122
B
LEU
123
n
125
LEU
123
B
THR
124
n
126
THR
124
B
GLY
125
n
127
GLY
125
B
ASN
126
n
128
ASN
126
B
VAL
127
n
129
VAL
127
B
ILE
128
n
130
ILE
128
B
ILE
129
n
131
ILE
129
B
GLU
130
n
132
GLU
130
B
THR
131
n
133
THR
131
B
LYS
132
n
134
LYS
132
B
PHE
133
n
135
PHE
133
B
PHE
134
n
136
PHE
134
B
ASP
135
n
137
ASP
135
B
ASP
136
n
138
ASP
136
B
ASP
137
n
139
ASP
137
B
LEU
138
n
140
LEU
138
B
LEU
139
n
141
LEU
139
B
VAL
140
n
142
VAL
140
B
SER
141
n
143
SER
141
B
THR
142
n
144
THR
142
B
SER
143
n
145
SER
143
B
ARG
144
n
146
ARG
144
B
VAL
145
n
147
VAL
145
B
ARG
146
n
148
ARG
146
B
LEU
147
n
149
LEU
147
B
PHE
148
n
150
PHE
148
B
TYR
149
n
151
TYR
149
B
VAL
150
n
152
VAL
150
B
author_defined_assembly
2
dimeric
A
THR
30
A
OG1
THR
32
1_555
A
MG
205
D
MG
MG
1_555
A
THR
47
A
OG1
THR
49
1_555
91.9
A
THR
30
A
OG1
THR
32
1_555
A
MG
205
D
MG
MG
1_555
A
GDP
201
A
F
O1B
GDP
1_555
96.6
A
THR
47
A
OG1
THR
49
1_555
A
MG
205
D
MG
MG
1_555
A
GDP
201
A
F
O1B
GDP
1_555
162.3
A
THR
30
A
OG1
THR
32
1_555
A
MG
205
D
MG
MG
1_555
A
PO4
202
A
C
O1
PO4
1_555
169.2
A
THR
47
A
OG1
THR
49
1_555
A
MG
205
D
MG
MG
1_555
A
PO4
202
A
C
O1
PO4
1_555
92.2
A
GDP
201
A
F
O1B
GDP
1_555
A
MG
205
D
MG
MG
1_555
A
PO4
202
A
C
O1
PO4
1_555
76.9
A
THR
30
A
OG1
THR
32
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2B
GTP
1_555
82.0
A
THR
47
A
OG1
THR
49
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2B
GTP
1_555
173.7
A
GDP
201
A
F
O1B
GDP
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2B
GTP
1_555
20.2
A
PO4
202
A
C
O1
PO4
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2B
GTP
1_555
93.5
A
THR
30
A
OG1
THR
32
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2G
GTP
1_555
173.8
A
THR
47
A
OG1
THR
49
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2G
GTP
1_555
94.1
A
GDP
201
A
F
O1B
GDP
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2G
GTP
1_555
78.1
A
PO4
202
A
C
O1
PO4
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2G
GTP
1_555
11.8
A
GTP
203
B
G
O2B
GTP
1_555
A
MG
205
D
MG
MG
1_555
A
GTP
203
B
G
O2G
GTP
1_555
92.1
A
THR
30
A
OG1
THR
32
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
239
H
O
HOH
1_555
92.1
A
THR
47
A
OG1
THR
49
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
239
H
O
HOH
1_555
80.9
A
GDP
201
A
F
O1B
GDP
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
239
H
O
HOH
1_555
83.2
A
PO4
202
A
C
O1
PO4
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
239
H
O
HOH
1_555
78.6
A
GTP
203
B
G
O2B
GTP
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
239
H
O
HOH
1_555
97.7
A
GTP
203
B
G
O2G
GTP
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
239
H
O
HOH
1_555
90.4
A
THR
30
A
OG1
THR
32
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
240
H
O
HOH
1_555
90.9
A
THR
47
A
OG1
THR
49
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
240
H
O
HOH
1_555
91.1
A
GDP
201
A
F
O1B
GDP
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
240
H
O
HOH
1_555
104.3
A
PO4
202
A
C
O1
PO4
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
240
H
O
HOH
1_555
99.1
A
GTP
203
B
G
O2B
GTP
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
240
H
O
HOH
1_555
90.5
A
GTP
203
B
G
O2G
GTP
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
240
H
O
HOH
1_555
87.4
A
HOH
239
H
O
HOH
1_555
A
MG
205
D
MG
MG
1_555
A
HOH
240
H
O
HOH
1_555
171.5
A
MSE
21
SELENOMETHIONINE
A
MSE
23
MET
A
MSE
99
SELENOMETHIONINE
A
MSE
101
MET
A
CME
135
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
A
CME
137
CYS
B
MSE
20
SELENOMETHIONINE
B
MSE
22
MET
B
MSE
71
SELENOMETHIONINE
B
MSE
73
MET
B
CME
86
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
B
CME
88
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
155
A
O
GLN
157
A
N
ALA
124
A
N
ALA
126
A
O
PHE
123
A
O
PHE
125
A
N
VAL
91
A
N
VAL
93
A
O
VAL
90
A
O
VAL
92
A
N
LEU
22
A
N
LEU
24
A
N
MSE
21
A
N
MSE
23
A
O
TRP
65
A
O
TRP
67
A
O
ASP
66
A
O
ASP
68
A
N
ASN
51
A
N
ASN
53
A
N
THR
54
A
N
THR
56
B
O
GLN
106
B
O
GLN
108
B
O
ILE
109
B
O
ILE
111
B
N
VAL
59
B
N
VAL
61
B
O
SER
66
B
O
SER
68
B
N
LYS
16
B
N
LYS
18
B
N
LEU
22
B
N
LEU
24
B
O
LEU
31
B
O
LEU
33
B
N
HIS
45
B
N
HIS
47
B
O
ARG
146
B
O
ARG
148
B
O
LEU
147
B
O
LEU
149
B
N
VAL
127
B
N
VAL
129
B
O
LYS
132
B
O
LYS
134
B
N
GLU
77
B
N
GLU
79
B
N
PHE
74
B
N
PHE
76
B
O
GLY
95
B
O
GLY
97
1
A
GLY
-1
A
GLY
1
1
Y
1
A
SER
0
A
SER
2
1
Y
1
A
MSE
1
A
MSE
3
1
Y
1
A
GLY
2
A
GLY
4
1
Y
1
A
LEU
3
A
LEU
5
1
Y
1
A
LEU
4
A
LEU
6
1
Y
1
A
THR
5
A
THR
7
1
Y
1
A
ILE
6
A
ILE
8
1
Y
1
A
LEU
7
A
LEU
9
1
Y
1
A
LYS
8
A
LYS
10
1
Y
1
A
LYS
9
A
LYS
11
1
Y
1
A
MSE
10
A
MSE
12
1
Y
1
A
LYS
11
A
LYS
13
1
Y
1
A
GLN
12
A
GLN
14
1
Y
1
A
LYS
13
A
LYS
15
1
Y
1
A
GLU
14
A
GLU
16
1
Y
1
A
VAL
180
A
VAL
182
1
Y
1
A
PHE
181
A
PHE
183
1
Y
1
A
THR
182
A
THR
184
1
Y
1
A
ALA
183
A
ALA
185
1
Y
1
A
ASP
184
A
ASP
186
1
Y
1
B
GLY
-1
B
GLY
1
1
Y
1
B
SER
0
B
SER
2
1
Y
1
B
MSE
1
B
MSE
3
1
Y
1
B
ALA
111
B
ALA
113
1
Y
1
B
ALA
112
B
ALA
114
1
Y
1
B
PRO
113
B
PRO
115
1
Y
1
B
GLU
114
B
GLU
116
1
Y
1
B
SER
115
B
SER
117
1
Y
1
B
GLN
116
B
GLN
118
1
Y
1
B
MSE
117
B
MSE
119
1
Y
1
B
MSE
118
B
MSE
120
1
Y
1
B
B
O
N
GLU
LEU
36
38
2.18
1
B
THR
35
-13.10
1
B
B
THR
GLU
35
36
-36.82
1
A
LEU
48
-104.70
42.80
1
A
ASP
95
-111.29
68.16
1
A
LYS
126
73.09
32.04
1
A
SER
134
-61.07
-177.92
1
B
THR
35
-38.49
-80.36
1
B
GLU
36
-168.00
113.00
1
B
ASP
37
-21.96
63.43
1
B
VAL
40
-47.96
152.90
1
B
LYS
83
59.64
-120.45
1
B
ASN
100
48.77
77.74
1
B
ALA
120
178.80
-79.99
1
B
ASP
136
68.18
-94.69
43.6
0.264
0.209
0.214
0.214
2.60
19.8
953
9910
9910
9.6
RANDOM
1
isotropic
THROUGHOUT
0.0
combination of Molecular Replacement and SAD phasing
human Arf1-GppNHp, N-terminally truncated by 17 residues
(J. Goldberg, Cell. 95:237-248, 1998)
Engh & Huber
0.227
0.00057
-0.021
2.60
19.8
105
2657
70
0
2482
0.9
0.007
0.358
0.232
2.76
141
1564
1714
56.0
2.60
19.8
1KSJ
9926
9926
0.0
0.0
0.081
1
25.1
8.7
99.6
2.60
2.65
7.0
558
0.391
1
9.6
100.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
model building
ARP/wARP
phasing
SHARP
(SAD PHASING)
refinement
BUSTER
refinement
BETA
VERSION
Complex of Arl2 and PDE delta, Crystal Form 2 (SeMet)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
8
N
N
The deposited coordinates represent the biological assembly
(consisting of one Arl2 molecule (bound to GDP/PO4) and one PDE delta molecule).
A
GLY
28
A
GLY
30
HELX_P
A
ASN
37
A
ASN
39
1
1
10
A
GLN
70
A
GLN
72
HELX_P
A
SER
75
A
SER
77
1
2
6
A
TYR
76
A
TYR
78
HELX_P
A
PHE
81
A
PHE
83
5
3
6
A
ARG
98
A
ARG
100
HELX_P
A
LEU
110
A
LEU
112
1
4
13
A
SER
134
A
SER
136
HELX_P
A
LEU
142
A
LEU
144
1
5
9
A
LEU
165
A
LEU
167
HELX_P
A
ARG
179
A
ARG
181
1
6
15
B
SER
2
B
SER
4
HELX_P
B
GLY
14
B
GLY
16
1
7
13
B
PRO
50
B
PRO
52
HELX_P
B
LYS
55
B
LYS
57
5
8
6
covale
1.332
both
A
LEU
20
A
C
LEU
22
1_555
A
MSE
21
A
N
MSE
23
1_555
covale
1.332
both
A
MSE
21
A
C
MSE
23
1_555
A
LEU
22
A
N
LEU
24
1_555
covale
1.324
both
A
ARG
98
A
C
ARG
100
1_555
A
MSE
99
A
N
MSE
101
1_555
covale
1.331
both
A
MSE
99
A
C
MSE
101
1_555
A
GLN
100
A
N
GLN
102
1_555
covale
1.330
both
A
SER
134
A
C
SER
136
1_555
A
CME
135
A
N
CME
137
1_555
covale
1.327
both
A
CME
135
A
C
CME
137
1_555
A
ASN
136
A
N
ASN
138
1_555
covale
1.325
both
B
TRP
19
B
C
TRP
21
1_555
B
MSE
20
B
N
MSE
22
1_555
covale
1.333
both
B
MSE
20
B
C
MSE
22
1_555
B
ASN
21
B
N
ASN
23
1_555
covale
1.332
both
B
GLN
70
B
C
GLN
72
1_555
B
MSE
71
B
N
MSE
73
1_555
covale
1.328
both
B
MSE
71
B
C
MSE
73
1_555
B
GLU
72
B
N
GLU
74
1_555
covale
1.329
both
B
GLN
85
B
C
GLN
87
1_555
B
CME
86
B
N
CME
88
1_555
covale
1.330
both
B
CME
86
B
C
CME
88
1_555
B
LEU
87
B
N
LEU
89
1_555
metalc
2.031
A
THR
30
A
OG1
THR
32
1_555
A
MG
205
D
MG
MG
1_555
metalc
2.018
A
THR
47
A
OG1
THR
49
1_555
A
MG
205
D
MG
MG
1_555
metalc
2.291
A
A
GDP
201
F
O1B
GDP
1_555
A
MG
205
D
MG
MG
1_555
metalc
1.816
A
A
PO4
202
C
O1
PO4
1_555
A
MG
205
D
MG
MG
1_555
metalc
2.135
B
A
GTP
203
G
O2B
GTP
1_555
A
MG
205
D
MG
MG
1_555
metalc
2.089
B
A
GTP
203
G
O2G
GTP
1_555
A
MG
205
D
MG
MG
1_555
metalc
2.162
A
MG
205
D
MG
MG
1_555
A
HOH
239
H
O
HOH
1_555
metalc
2.175
A
MG
205
D
MG
MG
1_555
A
HOH
240
H
O
HOH
1_555
SIGNALING PROTEIN/HYDROLASE
small GTPase, small GTP-binding protein, Arf family, effector molecule, immunoglobuline-like fold, GDI, SIGNALING PROTEIN-HYDROLASE COMPLEX
ARL2_MOUSE
UNP
1
1
Q9D0J4
MGLLTILKKMKQKERELRLLMLGLDNAGKTTISKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNY
FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAV
TGEDLLPGIDWLLDDISSRVFTAD
PDE6D_HUMAN
UNP
2
1
O43924
MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKV
YFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV
1
184
1KSJ
1
184
Q9D0J4
A
1
3
186
1
150
1KSJ
1
150
O43924
B
2
3
152
1
cloning artifact
GLY
-1
1KSJ
A
Q9D0J4
UNP
1
1
cloning artifact
SER
0
1KSJ
A
Q9D0J4
UNP
2
1
SER
engineered mutation
LEU
33
1KSJ
A
Q9D0J4
UNP
33
35
2
cloning artifact
GLY
-1
1KSJ
B
O43924
UNP
1
2
cloning artifact
SER
0
1KSJ
B
O43924
UNP
2
10
5
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
152
A
TRP
154
A
GLY
156
A
GLY
158
A
THR
119
A
THR
121
A
ASN
125
A
ASN
127
A
GLY
86
A
GLY
88
A
ASP
92
A
ASP
94
A
LEU
17
A
LEU
19
A
GLY
23
A
GLY
25
A
PHE
60
A
PHE
62
A
VAL
67
A
VAL
69
A
PHE
50
A
PHE
52
A
HIS
57
A
HIS
59
B
SER
101
B
SER
103
B
ILE
109
B
ILE
111
B
VAL
59
B
VAL
61
B
SER
67
B
SER
69
B
PHE
15
B
PHE
17
B
ASP
24
B
ASP
26
B
LYS
29
B
LYS
31
B
GLN
33
B
GLN
35
B
HIS
45
B
HIS
47
B
VAL
49
B
VAL
51
B
LEU
138
B
LEU
140
B
TYR
149
B
TYR
151
B
VAL
127
B
VAL
129
B
ASP
135
B
ASP
137
B
MSE
71
B
MSE
73
B
PHE
82
B
PHE
84
B
GLN
85
B
GLN
87
B
VAL
97
B
VAL
99
BINDING SITE FOR RESIDUE PO4 A 202
A
PO4
202
Software
9
BINDING SITE FOR RESIDUE MG A 205
A
MG
205
Software
7
BINDING SITE FOR RESIDUE BME A 236
A
BME
236
Software
8
BINDING SITE FOR RESIDUE GDP A 201
A
GDP
201
Software
22
BINDING SITE FOR RESIDUE GTP A 203
A
GTP
203
Software
25
A
ASN
26
A
ASN
28
9
1_555
A
LYS
29
A
LYS
31
9
1_555
A
THR
47
A
THR
49
9
1_555
A
GLY
69
A
GLY
71
9
1_555
A
GDP
201
F
GDP
9
1_555
A
MG
205
D
MG
9
1_555
A
HOH
239
H
HOH
9
1_555
A
HOH
240
H
HOH
9
1_555
A
HOH
245
H
HOH
9
1_555
A
THR
30
A
THR
32
7
1_555
A
THR
47
A
THR
49
7
1_555
A
GDP
201
F
GDP
7
1_555
A
PO4
202
C
PO4
7
1_555
A
GTP
203
G
GTP
7
1_555
A
HOH
239
H
HOH
7
1_555
A
HOH
240
H
HOH
7
1_555
A
LEU
24
A
LEU
26
8
1_555
A
VAL
91
A
VAL
93
8
1_555
A
ASP
92
A
ASP
94
8
1_555
A
ASP
95
A
ASP
97
8
1_555
A
MSE
99
A
MSE
101
8
1_555
A
CYS
102
A
CYS
104
8
1_555
A
HOH
247
H
HOH
8
1_555
A
HOH
248
H
HOH
8
1_555
A
LEU
24
A
LEU
26
22
1_555
A
ASP
25
A
ASP
27
22
1_555
A
ASN
26
A
ASN
28
22
1_555
A
ALA
27
A
ALA
29
22
1_555
A
GLY
28
A
GLY
30
22
1_555
A
LYS
29
A
LYS
31
22
1_555
A
THR
30
A
THR
32
22
1_555
A
THR
31
A
THR
33
22
1_555
A
ILE
44
A
ILE
46
22
1_555
A
ASN
125
A
ASN
127
22
1_555
A
LYS
126
A
LYS
128
22
1_555
A
ASP
128
A
ASP
130
22
1_555
A
SER
158
A
SER
160
22
1_555
A
ALA
159
A
ALA
161
22
1_555
A
VAL
160
A
VAL
162
22
1_555
A
PO4
202
C
PO4
22
1_555
A
MG
205
D
MG
22
1_555
A
HOH
239
H
HOH
22
1_555
A
HOH
240
H
HOH
22
1_555
A
HOH
266
H
HOH
22
1_555
B
GLY
84
B
GLY
86
22
1_455
B
CME
86
B
CME
88
22
1_455
A
ASP
25
A
ASP
27
25
1_555
A
ASN
26
A
ASN
28
25
1_555
A
ALA
27
A
ALA
29
25
1_555
A
GLY
28
A
GLY
30
25
1_555
A
LYS
29
A
LYS
31
25
1_555
A
THR
30
A
THR
32
25
1_555
A
THR
31
A
THR
33
25
1_555
A
ILE
44
A
ILE
46
25
1_555
A
PRO
46
A
PRO
48
25
1_555
A
THR
47
A
THR
49
25
1_555
A
GLY
69
A
GLY
71
25
1_555
A
ASN
125
A
ASN
127
25
1_555
A
LYS
126
A
LYS
128
25
1_555
A
ASP
128
A
ASP
130
25
1_555
A
LEU
129
A
LEU
131
25
1_555
A
SER
158
A
SER
160
25
1_555
A
ALA
159
A
ALA
161
25
1_555
A
VAL
160
A
VAL
162
25
1_555
A
MG
205
D
MG
25
1_555
A
HOH
239
H
HOH
25
1_555
A
HOH
240
H
HOH
25
1_555
A
HOH
245
H
HOH
25
1_555
B
TYR
81
B
TYR
83
25
1_455
B
GLY
84
B
GLY
86
25
1_455
B
CME
86
B
CME
88
25
1_455
19
orthorhombic
P 21 21 21