0.009846
0.000000
0.000000
0.000000
0.009846
0.000000
0.000000
0.000000
0.011730
0.00000
0.00000
0.00000
Brautigam, C.A.
Steitz, T.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
101.560
101.560
85.250
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C10 H15 N2 O7 P S
338.274
n
THYMIDINE-5'-THIOPHOSPHATE
DNA linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
N
100
N
N
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
Y
178
N
C
Y
179
N
N
Y
180
N
C
Y
181
N
C
Y
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
S
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
S
N
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
P
N
327
N
O
N
328
N
O
N
329
N
S
N
330
N
O
N
331
N
C
N
332
R
C
N
333
N
O
N
334
S
C
N
335
N
O
N
336
N
C
N
337
R
C
N
338
N
N
N
339
N
C
N
340
N
O
N
341
N
N
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
C
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
R
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
N
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
N
431
N
O
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
N
449
N
C
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
sing
Y
178
N
doub
Y
179
N
doub
N
180
N
sing
Y
181
N
sing
N
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
Y
285
N
doub
Y
286
N
sing
Y
287
N
sing
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
277
363
377
10.1006/jmbi.1997.1586
9514742
Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates.
1998
UK
Embo J.
EMJODG
0897
0261-4189
10
25
Structural Basis for the 3'-5' Exonuclease Activity of Escherichia Coli DNA Polymerase I: A Two Metal Ion Mechanism
1991
10.2210/pdb1ksp/pdb
pdb_00001ksp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.00
1
MIRRORS
IMAGE PLATE
1996-06
MARRESEARCH
SI CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
1.0
X12C
NSLS
SYNCHROTRON
NSLS BEAMLINE X12C
883.687
DNA (5'-D(P*TP*TP*PST)-3')
1
syn
polymer
68193.750
PROTEIN (DNA POLYMERASE I-KLENOW FRAGMENT (E.C.2.7.7.7))
2.7.7.7
V324M
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
210
nat
water
MUTATION: V324M
LARGE FRAGMENT
no
yes
(DT)(DT)(PST)
TTT
B
polydeoxyribonucleotide
no
no
MISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALE
LLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQ
LTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRL
AELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDK
LPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL
LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYME
RTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDE
LVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQAH
MISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALE
LLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQ
LTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRL
AELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDK
LPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL
LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYME
RTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDE
LVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQAH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
CJ 376
PCJ155
1
3.30
64.0000
5.8
1.4 M NA CITRATE PH 5.8
database_2
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
1998-02-25
1
1
2008-05-22
1
2
2011-07-13
1
3
2021-11-03
1
4
2024-02-14
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1997-08-19
REL
REL
ZN
ZINC ION
HOH
water
IN-HOUSE HIGH-RESOLUTION STRUCTURE
Other
experimental model
ZN
320
3
ZN
ZN
320
A
ZN
3
3
ZN
ZN
3
A
HOH
63
4
HOH
HOH
63
B
HOH
90
4
HOH
HOH
90
B
HOH
201
4
HOH
HOH
201
B
HOH
209
4
HOH
HOH
209
B
HOH
5
4
HOH
HOH
5
A
HOH
6
4
HOH
HOH
6
A
HOH
7
4
HOH
HOH
7
A
HOH
8
4
HOH
HOH
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
HOH
69
4
HOH
HOH
69
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
76
4
HOH
HOH
76
A
HOH
77
4
HOH
HOH
77
A
HOH
78
4
HOH
HOH
78
A
HOH
79
4
HOH
HOH
79
A
HOH
80
4
HOH
HOH
80
A
HOH
81
4
HOH
HOH
81
A
HOH
82
4
HOH
HOH
82
A
HOH
83
4
HOH
HOH
83
A
HOH
84
4
HOH
HOH
84
A
HOH
85
4
HOH
HOH
85
A
HOH
86
4
HOH
HOH
86
A
HOH
87
4
HOH
HOH
87
A
HOH
88
4
HOH
HOH
88
A
HOH
89
4
HOH
HOH
89
A
HOH
91
4
HOH
HOH
91
A
HOH
92
4
HOH
HOH
92
A
HOH
93
4
HOH
HOH
93
A
HOH
94
4
HOH
HOH
94
A
HOH
95
4
HOH
HOH
95
A
HOH
96
4
HOH
HOH
96
A
HOH
97
4
HOH
HOH
97
A
HOH
98
4
HOH
HOH
98
A
HOH
99
4
HOH
HOH
99
A
HOH
100
4
HOH
HOH
100
A
HOH
101
4
HOH
HOH
101
A
HOH
102
4
HOH
HOH
102
A
HOH
103
4
HOH
HOH
103
A
HOH
104
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
106
4
HOH
HOH
106
A
HOH
107
4
HOH
HOH
107
A
HOH
108
4
HOH
HOH
108
A
HOH
109
4
HOH
HOH
109
A
HOH
110
4
HOH
HOH
110
A
HOH
111
4
HOH
HOH
111
A
HOH
112
4
HOH
HOH
112
A
HOH
113
4
HOH
HOH
113
A
HOH
114
4
HOH
HOH
114
A
HOH
115
4
HOH
HOH
115
A
HOH
116
4
HOH
HOH
116
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
119
4
HOH
HOH
119
A
HOH
120
4
HOH
HOH
120
A
HOH
121
4
HOH
HOH
121
A
HOH
122
4
HOH
HOH
122
A
HOH
123
4
HOH
HOH
123
A
HOH
124
4
HOH
HOH
124
A
HOH
125
4
HOH
HOH
125
A
HOH
126
4
HOH
HOH
126
A
HOH
127
4
HOH
HOH
127
A
HOH
128
4
HOH
HOH
128
A
HOH
129
4
HOH
HOH
129
A
HOH
130
4
HOH
HOH
130
A
HOH
131
4
HOH
HOH
131
A
HOH
132
4
HOH
HOH
132
A
HOH
133
4
HOH
HOH
133
A
HOH
134
4
HOH
HOH
134
A
HOH
135
4
HOH
HOH
135
A
HOH
136
4
HOH
HOH
136
A
HOH
137
4
HOH
HOH
137
A
HOH
138
4
HOH
HOH
138
A
HOH
139
4
HOH
HOH
139
A
HOH
140
4
HOH
HOH
140
A
HOH
141
4
HOH
HOH
141
A
HOH
142
4
HOH
HOH
142
A
HOH
143
4
HOH
HOH
143
A
HOH
144
4
HOH
HOH
144
A
HOH
145
4
HOH
HOH
145
A
HOH
146
4
HOH
HOH
146
A
HOH
147
4
HOH
HOH
147
A
HOH
148
4
HOH
HOH
148
A
HOH
149
4
HOH
HOH
149
A
HOH
150
4
HOH
HOH
150
A
HOH
151
4
HOH
HOH
151
A
HOH
152
4
HOH
HOH
152
A
HOH
153
4
HOH
HOH
153
A
HOH
154
4
HOH
HOH
154
A
HOH
155
4
HOH
HOH
155
A
HOH
156
4
HOH
HOH
156
A
HOH
157
4
HOH
HOH
157
A
HOH
158
4
HOH
HOH
158
A
HOH
159
4
HOH
HOH
159
A
HOH
160
4
HOH
HOH
160
A
HOH
161
4
HOH
HOH
161
A
HOH
162
4
HOH
HOH
162
A
HOH
163
4
HOH
HOH
163
A
HOH
164
4
HOH
HOH
164
A
HOH
165
4
HOH
HOH
165
A
HOH
166
4
HOH
HOH
166
A
HOH
167
4
HOH
HOH
167
A
HOH
168
4
HOH
HOH
168
A
HOH
169
4
HOH
HOH
169
A
HOH
170
4
HOH
HOH
170
A
HOH
171
4
HOH
HOH
171
A
HOH
172
4
HOH
HOH
172
A
HOH
173
4
HOH
HOH
173
A
HOH
174
4
HOH
HOH
174
A
HOH
175
4
HOH
HOH
175
A
HOH
176
4
HOH
HOH
176
A
HOH
177
4
HOH
HOH
177
A
HOH
178
4
HOH
HOH
178
A
HOH
179
4
HOH
HOH
179
A
HOH
180
4
HOH
HOH
180
A
HOH
181
4
HOH
HOH
181
A
HOH
182
4
HOH
HOH
182
A
HOH
185
4
HOH
HOH
185
A
HOH
186
4
HOH
HOH
186
A
HOH
187
4
HOH
HOH
187
A
HOH
189
4
HOH
HOH
189
A
HOH
190
4
HOH
HOH
190
A
HOH
192
4
HOH
HOH
192
A
HOH
193
4
HOH
HOH
193
A
HOH
194
4
HOH
HOH
194
A
HOH
195
4
HOH
HOH
195
A
HOH
197
4
HOH
HOH
197
A
HOH
198
4
HOH
HOH
198
A
HOH
199
4
HOH
HOH
199
A
HOH
200
4
HOH
HOH
200
A
HOH
202
4
HOH
HOH
202
A
HOH
203
4
HOH
HOH
203
A
HOH
204
4
HOH
HOH
204
A
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
208
4
HOH
HOH
208
A
HOH
210
4
HOH
HOH
210
A
HOH
211
4
HOH
HOH
211
A
HOH
212
4
HOH
HOH
212
A
HOH
213
4
HOH
HOH
213
A
HOH
214
4
HOH
HOH
214
A
HOH
216
4
HOH
HOH
216
A
HOH
217
4
HOH
HOH
217
A
HOH
218
4
HOH
HOH
218
A
HOH
219
4
HOH
HOH
219
A
HOH
220
4
HOH
HOH
220
A
HOH
221
4
HOH
HOH
221
A
DT
1001
n
1
DT
1001
B
DT
1002
n
2
DT
1002
B
PST
1003
n
3
PST
1003
B
MET
324
n
1
MET
324
A
ILE
325
n
2
ILE
325
A
SER
326
n
3
SER
326
A
TYR
327
n
4
TYR
327
A
ASP
328
n
5
ASP
328
A
ASN
329
n
6
ASN
329
A
TYR
330
n
7
TYR
330
A
VAL
331
n
8
VAL
331
A
THR
332
n
9
THR
332
A
ILE
333
n
10
ILE
333
A
LEU
334
n
11
LEU
334
A
ASP
335
n
12
ASP
335
A
GLU
336
n
13
GLU
336
A
GLU
337
n
14
GLU
337
A
THR
338
n
15
THR
338
A
LEU
339
n
16
LEU
339
A
LYS
340
n
17
LYS
340
A
ALA
341
n
18
ALA
341
A
TRP
342
n
19
TRP
342
A
ILE
343
n
20
ILE
343
A
ALA
344
n
21
ALA
344
A
LYS
345
n
22
LYS
345
A
LEU
346
n
23
LEU
346
A
GLU
347
n
24
GLU
347
A
LYS
348
n
25
LYS
348
A
ALA
349
n
26
ALA
349
A
PRO
350
n
27
PRO
350
A
VAL
351
n
28
VAL
351
A
PHE
352
n
29
PHE
352
A
ALA
353
n
30
ALA
353
A
PHE
354
n
31
PHE
354
A
ASP
355
n
32
ASP
355
A
THR
356
n
33
THR
356
A
GLU
357
n
34
GLU
357
A
THR
358
n
35
THR
358
A
ASP
359
n
36
ASP
359
A
SER
360
n
37
SER
360
A
LEU
361
n
38
LEU
361
A
ASP
362
n
39
ASP
362
A
ASN
363
n
40
ASN
363
A
ILE
364
n
41
ILE
364
A
SER
365
n
42
SER
365
A
ALA
366
n
43
ALA
366
A
ASN
367
n
44
ASN
367
A
LEU
368
n
45
LEU
368
A
VAL
369
n
46
VAL
369
A
GLY
370
n
47
GLY
370
A
LEU
371
n
48
LEU
371
A
SER
372
n
49
SER
372
A
PHE
373
n
50
PHE
373
A
ALA
374
n
51
ALA
374
A
ILE
375
n
52
ILE
375
A
GLU
376
n
53
GLU
376
A
PRO
377
n
54
PRO
377
A
GLY
378
n
55
GLY
378
A
VAL
379
n
56
VAL
379
A
ALA
380
n
57
ALA
380
A
ALA
381
n
58
ALA
381
A
TYR
382
n
59
TYR
382
A
ILE
383
n
60
ILE
383
A
PRO
384
n
61
PRO
384
A
VAL
385
n
62
VAL
385
A
ALA
386
n
63
ALA
386
A
HIS
387
n
64
HIS
387
A
ASP
388
n
65
ASP
388
A
TYR
389
n
66
TYR
389
A
LEU
390
n
67
LEU
390
A
ASP
391
n
68
ASP
391
A
ALA
392
n
69
ALA
392
A
PRO
393
n
70
PRO
393
A
ASP
394
n
71
ASP
394
A
GLN
395
n
72
GLN
395
A
ILE
396
n
73
ILE
396
A
SER
397
n
74
SER
397
A
ARG
398
n
75
ARG
398
A
GLU
399
n
76
GLU
399
A
ARG
400
n
77
ARG
400
A
ALA
401
n
78
ALA
401
A
LEU
402
n
79
LEU
402
A
GLU
403
n
80
GLU
403
A
LEU
404
n
81
LEU
404
A
LEU
405
n
82
LEU
405
A
LYS
406
n
83
LYS
406
A
PRO
407
n
84
PRO
407
A
LEU
408
n
85
LEU
408
A
LEU
409
n
86
LEU
409
A
GLU
410
n
87
GLU
410
A
ASP
411
n
88
ASP
411
A
GLU
412
n
89
GLU
412
A
LYS
413
n
90
LYS
413
A
ALA
414
n
91
ALA
414
A
LEU
415
n
92
LEU
415
A
LYS
416
n
93
LYS
416
A
VAL
417
n
94
VAL
417
A
GLY
418
n
95
GLY
418
A
GLN
419
n
96
GLN
419
A
ASN
420
n
97
ASN
420
A
LEU
421
n
98
LEU
421
A
LYS
422
n
99
LYS
422
A
TYR
423
n
100
TYR
423
A
ASP
424
n
101
ASP
424
A
ARG
425
n
102
ARG
425
A
GLY
426
n
103
GLY
426
A
ILE
427
n
104
ILE
427
A
LEU
428
n
105
LEU
428
A
ALA
429
n
106
ALA
429
A
ASN
430
n
107
ASN
430
A
TYR
431
n
108
TYR
431
A
GLY
432
n
109
GLY
432
A
ILE
433
n
110
ILE
433
A
GLU
434
n
111
GLU
434
A
LEU
435
n
112
LEU
435
A
ARG
436
n
113
ARG
436
A
GLY
437
n
114
GLY
437
A
ILE
438
n
115
ILE
438
A
ALA
439
n
116
ALA
439
A
PHE
440
n
117
PHE
440
A
ASP
441
n
118
ASP
441
A
THR
442
n
119
THR
442
A
MET
443
n
120
MET
443
A
LEU
444
n
121
LEU
444
A
GLU
445
n
122
GLU
445
A
SER
446
n
123
SER
446
A
TYR
447
n
124
TYR
447
A
ILE
448
n
125
ILE
448
A
LEU
449
n
126
LEU
449
A
ASN
450
n
127
ASN
450
A
SER
451
n
128
SER
451
A
VAL
452
n
129
VAL
452
A
ALA
453
n
130
ALA
453
A
GLY
454
n
131
GLY
454
A
ARG
455
n
132
ARG
455
A
HIS
456
n
133
HIS
456
A
ASP
457
n
134
ASP
457
A
MET
458
n
135
MET
458
A
ASP
459
n
136
ASP
459
A
SER
460
n
137
SER
460
A
LEU
461
n
138
LEU
461
A
ALA
462
n
139
ALA
462
A
GLU
463
n
140
GLU
463
A
ARG
464
n
141
ARG
464
A
TRP
465
n
142
TRP
465
A
LEU
466
n
143
LEU
466
A
LYS
467
n
144
LYS
467
A
HIS
468
n
145
HIS
468
A
LYS
469
n
146
LYS
469
A
THR
470
n
147
THR
470
A
ILE
471
n
148
ILE
471
A
THR
472
n
149
THR
472
A
PHE
473
n
150
PHE
473
A
GLU
474
n
151
GLU
474
A
GLU
475
n
152
GLU
475
A
ILE
476
n
153
ILE
476
A
ALA
477
n
154
ALA
477
A
GLY
478
n
155
GLY
478
A
LYS
479
n
156
LYS
479
A
GLY
480
n
157
GLY
480
A
LYS
481
n
158
LYS
481
A
ASN
482
n
159
ASN
482
A
GLN
483
n
160
GLN
483
A
LEU
484
n
161
LEU
484
A
THR
485
n
162
THR
485
A
PHE
486
n
163
PHE
486
A
ASN
487
n
164
ASN
487
A
GLN
488
n
165
GLN
488
A
ILE
489
n
166
ILE
489
A
ALA
490
n
167
ALA
490
A
LEU
491
n
168
LEU
491
A
GLU
492
n
169
GLU
492
A
GLU
493
n
170
GLU
493
A
ALA
494
n
171
ALA
494
A
GLY
495
n
172
GLY
495
A
ARG
496
n
173
ARG
496
A
TYR
497
n
174
TYR
497
A
ALA
498
n
175
ALA
498
A
ALA
499
n
176
ALA
499
A
GLU
500
n
177
GLU
500
A
ASP
501
n
178
ASP
501
A
ALA
502
n
179
ALA
502
A
ASP
503
n
180
ASP
503
A
VAL
504
n
181
VAL
504
A
THR
505
n
182
THR
505
A
LEU
506
n
183
LEU
506
A
GLN
507
n
184
GLN
507
A
LEU
508
n
185
LEU
508
A
HIS
509
n
186
HIS
509
A
LEU
510
n
187
LEU
510
A
LYS
511
n
188
LYS
511
A
MET
512
n
189
MET
512
A
TRP
513
n
190
TRP
513
A
PRO
514
n
191
PRO
514
A
ASP
515
n
192
ASP
515
A
LEU
516
n
193
LEU
516
A
GLN
517
n
194
GLN
517
A
LYS
518
n
195
LYS
518
A
HIS
519
n
196
HIS
519
A
LYS
520
n
197
LYS
520
A
GLY
521
n
198
GLY
521
A
PRO
522
n
199
PRO
522
A
LEU
523
n
200
LEU
523
A
ASN
524
n
201
ASN
524
A
VAL
525
n
202
VAL
525
A
PHE
526
n
203
PHE
526
A
GLU
527
n
204
GLU
527
A
ASN
528
n
205
ASN
528
A
ILE
529
n
206
ILE
529
A
GLU
530
n
207
GLU
530
A
MET
531
n
208
MET
531
A
PRO
532
n
209
PRO
532
A
LEU
533
n
210
LEU
533
A
VAL
534
n
211
VAL
534
A
PRO
535
n
212
PRO
535
A
VAL
536
n
213
VAL
536
A
LEU
537
n
214
LEU
537
A
SER
538
n
215
SER
538
A
ARG
539
n
216
ARG
539
A
ILE
540
n
217
ILE
540
A
GLU
541
n
218
GLU
541
A
ARG
542
n
219
ARG
542
A
ASN
543
n
220
ASN
543
A
GLY
544
n
221
GLY
544
A
VAL
545
n
222
VAL
545
A
LYS
546
n
223
LYS
546
A
ILE
547
n
224
ILE
547
A
ASP
548
n
225
ASP
548
A
PRO
549
n
226
PRO
549
A
LYS
550
n
227
LYS
550
A
VAL
551
n
228
VAL
551
A
LEU
552
n
229
LEU
552
A
HIS
553
n
230
HIS
553
A
ASN
554
n
231
ASN
554
A
HIS
555
n
232
HIS
555
A
SER
556
n
233
SER
556
A
GLU
557
n
234
GLU
557
A
GLU
558
n
235
GLU
558
A
LEU
559
n
236
LEU
559
A
THR
560
n
237
THR
560
A
LEU
561
n
238
LEU
561
A
ARG
562
n
239
ARG
562
A
LEU
563
n
240
LEU
563
A
ALA
564
n
241
ALA
564
A
GLU
565
n
242
GLU
565
A
LEU
566
n
243
LEU
566
A
GLU
567
n
244
GLU
567
A
LYS
568
n
245
LYS
568
A
LYS
569
n
246
LYS
569
A
ALA
570
n
247
ALA
570
A
HIS
571
n
248
HIS
571
A
GLU
572
n
249
GLU
572
A
ILE
573
n
250
ILE
573
A
ALA
574
n
251
ALA
574
A
GLY
575
n
252
GLY
575
A
GLU
576
n
253
GLU
576
A
GLU
577
n
254
GLU
577
A
PHE
578
n
255
PHE
578
A
ASN
579
n
256
ASN
579
A
LEU
580
n
257
LEU
580
A
SER
581
n
258
SER
581
A
SER
582
n
259
SER
582
A
THR
583
n
260
THR
583
A
LYS
584
n
261
LYS
584
A
GLN
585
n
262
GLN
585
A
LEU
586
n
263
LEU
586
A
GLN
587
n
264
GLN
587
A
THR
588
n
265
THR
588
A
ILE
589
n
266
ILE
589
A
LEU
590
n
267
LEU
590
A
PHE
591
n
268
PHE
591
A
GLU
592
n
269
GLU
592
A
LYS
593
n
270
LYS
593
A
GLN
594
n
271
GLN
594
A
GLY
595
n
272
GLY
595
A
ILE
596
n
273
ILE
596
A
LYS
597
n
274
LYS
597
A
PRO
598
n
275
PRO
598
A
LEU
599
n
276
LEU
599
A
LYS
600
n
277
LYS
600
A
LYS
601
n
278
LYS
601
A
THR
602
n
279
THR
602
A
n
280
603
A
n
281
604
A
n
282
605
A
n
283
606
A
PRO
607
n
284
PRO
607
A
SER
608
n
285
SER
608
A
THR
609
n
286
THR
609
A
SER
610
n
287
SER
610
A
GLU
611
n
288
GLU
611
A
GLU
612
n
289
GLU
612
A
VAL
613
n
290
VAL
613
A
LEU
614
n
291
LEU
614
A
GLU
615
n
292
GLU
615
A
GLU
616
n
293
GLU
616
A
LEU
617
n
294
LEU
617
A
ALA
618
n
295
ALA
618
A
LEU
619
n
296
LEU
619
A
ASP
620
n
297
ASP
620
A
TYR
621
n
298
TYR
621
A
PRO
622
n
299
PRO
622
A
LEU
623
n
300
LEU
623
A
PRO
624
n
301
PRO
624
A
LYS
625
n
302
LYS
625
A
VAL
626
n
303
VAL
626
A
ILE
627
n
304
ILE
627
A
LEU
628
n
305
LEU
628
A
GLU
629
n
306
GLU
629
A
TYR
630
n
307
TYR
630
A
ARG
631
n
308
ARG
631
A
GLY
632
n
309
GLY
632
A
LEU
633
n
310
LEU
633
A
ALA
634
n
311
ALA
634
A
LYS
635
n
312
LYS
635
A
LEU
636
n
313
LEU
636
A
LYS
637
n
314
LYS
637
A
SER
638
n
315
SER
638
A
THR
639
n
316
THR
639
A
TYR
640
n
317
TYR
640
A
THR
641
n
318
THR
641
A
ASP
642
n
319
ASP
642
A
LYS
643
n
320
LYS
643
A
LEU
644
n
321
LEU
644
A
PRO
645
n
322
PRO
645
A
LEU
646
n
323
LEU
646
A
MET
647
n
324
MET
647
A
ILE
648
n
325
ILE
648
A
ASN
649
n
326
ASN
649
A
PRO
650
n
327
PRO
650
A
LYS
651
n
328
LYS
651
A
THR
652
n
329
THR
652
A
GLY
653
n
330
GLY
653
A
ARG
654
n
331
ARG
654
A
VAL
655
n
332
VAL
655
A
HIS
656
n
333
HIS
656
A
THR
657
n
334
THR
657
A
SER
658
n
335
SER
658
A
TYR
659
n
336
TYR
659
A
HIS
660
n
337
HIS
660
A
GLN
661
n
338
GLN
661
A
ALA
662
n
339
ALA
662
A
VAL
663
n
340
VAL
663
A
THR
664
n
341
THR
664
A
ALA
665
n
342
ALA
665
A
THR
666
n
343
THR
666
A
GLY
667
n
344
GLY
667
A
ARG
668
n
345
ARG
668
A
LEU
669
n
346
LEU
669
A
SER
670
n
347
SER
670
A
SER
671
n
348
SER
671
A
THR
672
n
349
THR
672
A
ASP
673
n
350
ASP
673
A
PRO
674
n
351
PRO
674
A
ASN
675
n
352
ASN
675
A
LEU
676
n
353
LEU
676
A
GLN
677
n
354
GLN
677
A
ASN
678
n
355
ASN
678
A
ILE
679
n
356
ILE
679
A
PRO
680
n
357
PRO
680
A
VAL
681
n
358
VAL
681
A
ARG
682
n
359
ARG
682
A
ASN
683
n
360
ASN
683
A
GLU
684
n
361
GLU
684
A
GLU
685
n
362
GLU
685
A
GLY
686
n
363
GLY
686
A
ARG
687
n
364
ARG
687
A
ARG
688
n
365
ARG
688
A
ILE
689
n
366
ILE
689
A
ARG
690
n
367
ARG
690
A
GLN
691
n
368
GLN
691
A
ALA
692
n
369
ALA
692
A
PHE
693
n
370
PHE
693
A
ILE
694
n
371
ILE
694
A
ALA
695
n
372
ALA
695
A
PRO
696
n
373
PRO
696
A
GLU
697
n
374
GLU
697
A
ASP
698
n
375
ASP
698
A
TYR
699
n
376
TYR
699
A
VAL
700
n
377
VAL
700
A
ILE
701
n
378
ILE
701
A
VAL
702
n
379
VAL
702
A
SER
703
n
380
SER
703
A
ALA
704
n
381
ALA
704
A
ASP
705
n
382
ASP
705
A
TYR
706
n
383
TYR
706
A
SER
707
n
384
SER
707
A
GLN
708
n
385
GLN
708
A
ILE
709
n
386
ILE
709
A
GLU
710
n
387
GLU
710
A
LEU
711
n
388
LEU
711
A
ARG
712
n
389
ARG
712
A
ILE
713
n
390
ILE
713
A
MET
714
n
391
MET
714
A
ALA
715
n
392
ALA
715
A
HIS
716
n
393
HIS
716
A
LEU
717
n
394
LEU
717
A
SER
718
n
395
SER
718
A
ARG
719
n
396
ARG
719
A
ASP
720
n
397
ASP
720
A
LYS
721
n
398
LYS
721
A
GLY
722
n
399
GLY
722
A
LEU
723
n
400
LEU
723
A
LEU
724
n
401
LEU
724
A
THR
725
n
402
THR
725
A
ALA
726
n
403
ALA
726
A
PHE
727
n
404
PHE
727
A
ALA
728
n
405
ALA
728
A
GLU
729
n
406
GLU
729
A
GLY
730
n
407
GLY
730
A
LYS
731
n
408
LYS
731
A
ASP
732
n
409
ASP
732
A
ILE
733
n
410
ILE
733
A
HIS
734
n
411
HIS
734
A
ARG
735
n
412
ARG
735
A
ALA
736
n
413
ALA
736
A
THR
737
n
414
THR
737
A
ALA
738
n
415
ALA
738
A
ALA
739
n
416
ALA
739
A
GLU
740
n
417
GLU
740
A
VAL
741
n
418
VAL
741
A
PHE
742
n
419
PHE
742
A
GLY
743
n
420
GLY
743
A
LEU
744
n
421
LEU
744
A
PRO
745
n
422
PRO
745
A
LEU
746
n
423
LEU
746
A
GLU
747
n
424
GLU
747
A
THR
748
n
425
THR
748
A
VAL
749
n
426
VAL
749
A
THR
750
n
427
THR
750
A
SER
751
n
428
SER
751
A
GLU
752
n
429
GLU
752
A
GLN
753
n
430
GLN
753
A
ARG
754
n
431
ARG
754
A
ARG
755
n
432
ARG
755
A
SER
756
n
433
SER
756
A
ALA
757
n
434
ALA
757
A
LYS
758
n
435
LYS
758
A
ALA
759
n
436
ALA
759
A
ILE
760
n
437
ILE
760
A
ASN
761
n
438
ASN
761
A
PHE
762
n
439
PHE
762
A
GLY
763
n
440
GLY
763
A
LEU
764
n
441
LEU
764
A
ILE
765
n
442
ILE
765
A
TYR
766
n
443
TYR
766
A
GLY
767
n
444
GLY
767
A
MET
768
n
445
MET
768
A
SER
769
n
446
SER
769
A
ALA
770
n
447
ALA
770
A
PHE
771
n
448
PHE
771
A
GLY
772
n
449
GLY
772
A
LEU
773
n
450
LEU
773
A
ALA
774
n
451
ALA
774
A
ARG
775
n
452
ARG
775
A
GLN
776
n
453
GLN
776
A
LEU
777
n
454
LEU
777
A
ASN
778
n
455
ASN
778
A
ILE
779
n
456
ILE
779
A
PRO
780
n
457
PRO
780
A
ARG
781
n
458
ARG
781
A
LYS
782
n
459
LYS
782
A
GLU
783
n
460
GLU
783
A
ALA
784
n
461
ALA
784
A
GLN
785
n
462
GLN
785
A
LYS
786
n
463
LYS
786
A
TYR
787
n
464
TYR
787
A
MET
788
n
465
MET
788
A
ASP
789
n
466
ASP
789
A
LEU
790
n
467
LEU
790
A
TYR
791
n
468
TYR
791
A
PHE
792
n
469
PHE
792
A
GLU
793
n
470
GLU
793
A
ARG
794
n
471
ARG
794
A
TYR
795
n
472
TYR
795
A
PRO
796
n
473
PRO
796
A
GLY
797
n
474
GLY
797
A
VAL
798
n
475
VAL
798
A
LEU
799
n
476
LEU
799
A
GLU
800
n
477
GLU
800
A
TYR
801
n
478
TYR
801
A
MET
802
n
479
MET
802
A
GLU
803
n
480
GLU
803
A
ARG
804
n
481
ARG
804
A
THR
805
n
482
THR
805
A
ARG
806
n
483
ARG
806
A
ALA
807
n
484
ALA
807
A
GLN
808
n
485
GLN
808
A
ALA
809
n
486
ALA
809
A
LYS
810
n
487
LYS
810
A
GLU
811
n
488
GLU
811
A
GLN
812
n
489
GLN
812
A
GLY
813
n
490
GLY
813
A
TYR
814
n
491
TYR
814
A
VAL
815
n
492
VAL
815
A
GLU
816
n
493
GLU
816
A
THR
817
n
494
THR
817
A
LEU
818
n
495
LEU
818
A
ASP
819
n
496
ASP
819
A
GLY
820
n
497
GLY
820
A
ARG
821
n
498
ARG
821
A
ARG
822
n
499
ARG
822
A
LEU
823
n
500
LEU
823
A
TYR
824
n
501
TYR
824
A
LEU
825
n
502
LEU
825
A
PRO
826
n
503
PRO
826
A
ASP
827
n
504
ASP
827
A
ILE
828
n
505
ILE
828
A
LYS
829
n
506
LYS
829
A
SER
830
n
507
SER
830
A
SER
831
n
508
SER
831
A
ASN
832
n
509
ASN
832
A
GLY
833
n
510
GLY
833
A
ALA
834
n
511
ALA
834
A
ARG
835
n
512
ARG
835
A
ARG
836
n
513
ARG
836
A
ALA
837
n
514
ALA
837
A
ALA
838
n
515
ALA
838
A
ALA
839
n
516
ALA
839
A
GLU
840
n
517
GLU
840
A
ARG
841
n
518
ARG
841
A
ALA
842
n
519
ALA
842
A
ALA
843
n
520
ALA
843
A
ILE
844
n
521
ILE
844
A
ASN
845
n
522
ASN
845
A
ALA
846
n
523
ALA
846
A
PRO
847
n
524
PRO
847
A
MET
848
n
525
MET
848
A
GLN
849
n
526
GLN
849
A
GLY
850
n
527
GLY
850
A
THR
851
n
528
THR
851
A
ALA
852
n
529
ALA
852
A
ALA
853
n
530
ALA
853
A
ASP
854
n
531
ASP
854
A
ILE
855
n
532
ILE
855
A
ILE
856
n
533
ILE
856
A
LYS
857
n
534
LYS
857
A
ARG
858
n
535
ARG
858
A
ALA
859
n
536
ALA
859
A
MET
860
n
537
MET
860
A
ILE
861
n
538
ILE
861
A
ALA
862
n
539
ALA
862
A
VAL
863
n
540
VAL
863
A
ASP
864
n
541
ASP
864
A
ALA
865
n
542
ALA
865
A
TRP
866
n
543
TRP
866
A
LEU
867
n
544
LEU
867
A
GLN
868
n
545
GLN
868
A
ALA
869
n
546
ALA
869
A
GLU
870
n
547
GLU
870
A
GLN
871
n
548
GLN
871
A
PRO
872
n
549
PRO
872
A
ARG
873
n
550
ARG
873
A
VAL
874
n
551
VAL
874
A
ARG
875
n
552
ARG
875
A
MET
876
n
553
MET
876
A
ILE
877
n
554
ILE
877
A
MET
878
n
555
MET
878
A
GLN
879
n
556
GLN
879
A
VAL
880
n
557
VAL
880
A
HIS
881
n
558
HIS
881
A
ASP
882
n
559
ASP
882
A
GLU
883
n
560
GLU
883
A
LEU
884
n
561
LEU
884
A
VAL
885
n
562
VAL
885
A
PHE
886
n
563
PHE
886
A
GLU
887
n
564
GLU
887
A
VAL
888
n
565
VAL
888
A
HIS
889
n
566
HIS
889
A
LYS
890
n
567
LYS
890
A
ASP
891
n
568
ASP
891
A
ASP
892
n
569
ASP
892
A
VAL
893
n
570
VAL
893
A
ASP
894
n
571
ASP
894
A
ALA
895
n
572
ALA
895
A
VAL
896
n
573
VAL
896
A
ALA
897
n
574
ALA
897
A
LYS
898
n
575
LYS
898
A
GLN
899
n
576
GLN
899
A
ILE
900
n
577
ILE
900
A
HIS
901
n
578
HIS
901
A
GLN
902
n
579
GLN
902
A
LEU
903
n
580
LEU
903
A
MET
904
n
581
MET
904
A
GLU
905
n
582
GLU
905
A
ASN
906
n
583
ASN
906
A
CYS
907
n
584
CYS
907
A
THR
908
n
585
THR
908
A
ARG
909
n
586
ARG
909
A
LEU
910
n
587
LEU
910
A
ASP
911
n
588
ASP
911
A
VAL
912
n
589
VAL
912
A
PRO
913
n
590
PRO
913
A
LEU
914
n
591
LEU
914
A
LEU
915
n
592
LEU
915
A
VAL
916
n
593
VAL
916
A
GLU
917
n
594
GLU
917
A
VAL
918
n
595
VAL
918
A
GLY
919
n
596
GLY
919
A
SER
920
n
597
SER
920
A
GLY
921
n
598
GLY
921
A
GLU
922
n
599
GLU
922
A
ASN
923
n
600
ASN
923
A
TRP
924
n
601
TRP
924
A
ASP
925
n
602
ASP
925
A
GLN
926
n
603
GLN
926
A
ALA
927
n
604
ALA
927
A
HIS
928
n
605
HIS
928
A
author_defined_assembly
2
dimeric
A
HIS
901
B
NE2
HIS
578
1_555
A
ZN
3
D
ZN
ZN
1_555
A
GLU
905
B
OE2
GLU
582
1_555
106.2
B
PST
1003
THYMIDINE-5'-THIOPHOSPHATE
A
PST
3
DT
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
658
B
O
SER
335
A
N
THR
672
B
N
THR
349
A
O
GLU
917
B
O
GLU
594
A
N
ASP
705
B
N
ASP
382
A
O
VAL
700
B
O
VAL
377
A
N
VAL
888
B
N
VAL
565
A
O
GLU
883
B
O
GLU
560
A
N
VAL
880
B
N
VAL
557
A
O
VAL
815
B
O
VAL
492
A
N
LEU
823
B
N
LEU
500
A
O
ALA
353
B
O
ALA
30
A
N
ALA
374
B
N
ALA
51
A
O
LEU
371
B
O
LEU
48
A
N
ILE
383
B
N
ILE
60
A
O
LYS
416
B
O
LYS
93
A
N
ALA
439
B
N
ALA
116
1
A
CG
LEU
599
B
CG
LEU
276
1
Y
1
A
CD1
LEU
599
B
CD1
LEU
276
1
Y
1
A
CD2
LEU
599
B
CD2
LEU
276
1
Y
1
A
CG
LYS
600
B
CG
LYS
277
1
Y
1
A
CD
LYS
600
B
CD
LYS
277
1
Y
1
A
CE
LYS
600
B
CE
LYS
277
1
Y
1
A
NZ
LYS
600
B
NZ
LYS
277
1
Y
1
A
CG
LYS
601
B
CG
LYS
278
1
Y
1
A
CD
LYS
601
B
CD
LYS
278
1
Y
1
A
CE
LYS
601
B
CE
LYS
278
1
Y
1
A
NZ
LYS
601
B
NZ
LYS
278
1
Y
1
A
OG1
THR
602
B
OG1
THR
279
1
Y
1
A
CG2
THR
602
B
CG2
THR
279
1
Y
1
A
CG
PRO
607
B
CG
PRO
284
1
Y
1
A
CD
PRO
607
B
CD
PRO
284
1
Y
1
A
OG
SER
608
B
OG
SER
285
1
Y
1
A
OG1
THR
609
B
OG1
THR
286
1
Y
1
A
CG2
THR
609
B
CG2
THR
286
1
Y
1
A
OG
SER
610
B
OG
SER
287
1
Y
1
A
CG
GLU
611
B
CG
GLU
288
1
Y
1
A
CD
GLU
611
B
CD
GLU
288
1
Y
1
A
OE1
GLU
611
B
OE1
GLU
288
1
Y
1
A
OE2
GLU
611
B
OE2
GLU
288
1
Y
1
A
PRO
603
B
PRO
280
1
Y
1
A
GLY
604
B
GLY
281
1
Y
1
A
GLY
605
B
GLY
282
1
Y
1
A
ALA
606
B
ALA
283
1
Y
1
11.79
1.50
119.60
131.39
B
B
B
OP1
P
OP2
DT
DT
DT
1001
1001
1001
N
1
-6.26
0.90
105.70
99.44
B
B
B
O5'
P
OP1
DT
DT
DT
1001
1001
1001
N
1
-7.33
0.80
109.40
102.07
B
B
B
O5'
C5'
C4'
DT
DT
DT
1001
1001
1001
N
1
-4.46
0.40
104.50
100.04
B
B
B
O4'
C4'
C3'
DT
DT
DT
1001
1001
1001
N
1
9.59
1.20
115.70
125.29
B
B
B
C5'
C4'
C3'
DT
DT
DT
1001
1001
1001
N
1
-12.41
1.90
109.30
96.89
B
B
B
C5'
C4'
O4'
DT
DT
DT
1001
1001
1001
N
1
-9.86
0.70
102.20
92.34
B
B
B
C4'
C3'
C2'
DT
DT
DT
1001
1001
1001
N
1
7.81
1.20
102.50
110.31
B
B
B
C3'
C2'
C1'
DT
DT
DT
1001
1001
1001
N
1
-13.71
1.90
112.60
98.89
B
B
B
N1
C1'
C2'
DT
DT
DT
1001
1001
1001
N
1
11.83
0.30
108.30
120.13
B
B
B
O4'
C1'
N1
DT
DT
DT
1001
1001
1001
N
1
5.36
0.80
123.10
128.46
B
B
B
N1
C2
O2
DT
DT
DT
1001
1001
1001
N
1
-5.54
0.60
122.30
116.76
B
B
B
N3
C2
O2
DT
DT
DT
1001
1001
1001
N
1
-3.90
0.60
119.90
116.00
B
B
B
N3
C4
O4
DT
DT
DT
1001
1001
1001
N
1
5.22
0.70
124.90
130.12
B
B
B
C5
C4
O4
DT
DT
DT
1001
1001
1001
N
1
-4.07
0.60
122.90
118.83
B
B
B
C6
C5
C7
DT
DT
DT
1001
1001
1001
N
1
-18.79
2.70
111.00
92.21
A
A
A
N
CA
C
ILE
ILE
ILE
325
325
325
N
1
7.26
1.20
103.30
110.56
A
A
A
N
CA
CB
PRO
PRO
PRO
607
607
607
N
1
B
B
C2'
C1'
DT
DT
1001
1001
-0.116
0.010
1.518
1.402
N
1
B
B
C5
C7
DT
DT
1001
1001
0.039
0.006
1.496
1.535
N
1
B
B
C5
C7
DT
DT
1002
1002
0.063
0.006
1.496
1.559
N
1
A
SER
326
-109.86
-162.52
1
A
ASN
420
65.31
62.92
1
A
ASN
450
-168.70
97.36
1
A
ASN
482
-83.89
30.73
1
A
ALA
574
-115.50
-142.22
1
A
GLU
576
55.38
-175.43
1
A
LEU
580
-93.72
45.54
1
A
THR
583
53.72
14.68
1
A
LYS
584
-146.28
-70.01
1
A
ILE
589
-108.60
-71.58
1
A
GLN
594
90.00
120.42
1
A
LYS
597
-14.21
-49.73
1
A
LEU
599
-74.70
-152.97
1
A
SER
610
-161.03
-42.00
1
A
GLU
612
-114.74
77.15
1
A
ASP
620
-144.40
-53.53
1
A
VAL
663
-132.91
-44.61
1
A
ASN
683
-175.34
142.09
1
A
GLN
708
33.21
53.12
1
A
LYS
782
71.10
-30.78
1
A
SER
830
-33.10
-35.13
1
A
SER
831
74.00
-6.23
1
A
HIS
881
60.93
-116.00
1
A
ASN
906
-134.83
-37.53
1
A
CYS
907
-95.58
37.26
1
A
THR
908
-131.03
-138.56
PARHCSDX.PRO
TOPHCSDX.PRO
CHAD_PARAM.DNA
CHAD_TOP.DNA
NEWPARAM.EXP
38.80
ONLY THE THREE 3'-TERMINAL BASES OF THE DNA COULD BE
MODELED INTO ELECTRON DENSITY. ONLY THE LAST PHOSPHATE IS
MODIFIED.
0.2410000
0.1930000
2.300
20.000
3212
31495
10.000
96.300
RANDOM
100000.000
0.1000
1
ISOTROPIC
THROUGHOUT
2.000
RIGID-BODY REFINEMENT
IN-HOUSE HIGH-RESOLUTION STRUCTURE
0.27
20.0
2.300
20.000
210
5026
2
61
4753
0.009
1.60
22.7
1.30
0.3300000
0.2980000
2.33
65
711
30
10.00
2.300
50.000
1KSP
200444
-3.000
0.064
1
12.1000
96.300
2.300
2.340
2.000
0.407
2.500
96.30
model building
X-PLOR
refinement
X-PLOR
3.8
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
DNA polymerase I Klenow fragment (E.C.2.7.7.7) mutant/DNA complex
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
GLU
336
B
GLU
13
HELX_P
A
LYS
348
B
LYS
25
1
1
13
A
ASN
363
B
ASN
40
HELX_P
A
SER
365
B
SER
42
5
2
3
A
ARG
398
B
ARG
75
HELX_P
A
GLU
410
B
GLU
87
1
3
13
A
LEU
421
B
LEU
98
HELX_P
A
TYR
431
B
TYR
108
1
4
11
A
THR
442
B
THR
119
HELX_P
A
LEU
449
B
LEU
126
1
5
8
A
SER
451
B
SER
128
HELX_P
A
ALA
453
B
ALA
130
5
6
3
A
MET
458
B
MET
135
HELX_P
A
LEU
466
B
LEU
143
1
7
9
A
PHE
473
B
PHE
150
HELX_P
A
ALA
477
B
ALA
154
1
8
5
A
PHE
486
B
PHE
163
HELX_P
A
GLN
488
B
GLN
165
5
9
3
A
LEU
491
B
LEU
168
HELX_P
A
GLN
517
B
GLN
194
1
10
27
A
LYS
520
B
LYS
197
HELX_P
A
ASN
528
B
ASN
205
1
11
9
A
GLU
530
B
GLU
207
HELX_P
A
ASN
543
B
ASN
220
1
12
14
A
PRO
549
B
PRO
226
HELX_P
A
ILE
573
B
ILE
250
1
13
25
A
GLN
587
B
GLN
264
HELX_P
A
LYS
593
B
LYS
270
1
14
7
A
VAL
613
B
VAL
290
HELX_P
A
LEU
619
B
LEU
296
1
15
7
A
PRO
622
B
PRO
299
HELX_P
A
THR
639
B
THR
316
1
16
18
A
THR
641
B
THR
318
HELX_P
A
MET
647
B
MET
324
1
17
7
A
LEU
676
B
LEU
353
HELX_P
A
ASN
678
B
ASN
355
5
18
3
A
GLU
684
B
GLU
361
HELX_P
A
ALA
692
B
ALA
369
1
19
9
A
ILE
709
B
ILE
386
HELX_P
A
LEU
717
B
LEU
394
1
20
9
A
LYS
721
B
LYS
398
HELX_P
A
ALA
728
B
ALA
405
1
21
8
A
ILE
733
B
ILE
410
HELX_P
A
VAL
741
B
VAL
418
1
22
9
A
LEU
746
B
LEU
423
HELX_P
A
THR
748
B
THR
425
5
23
3
A
SER
751
B
SER
428
HELX_P
A
ILE
765
B
ILE
442
1
24
15
A
ALA
770
B
ALA
447
HELX_P
A
LEU
777
B
LEU
454
1
25
8
A
GLU
783
B
GLU
460
HELX_P
A
ARG
794
B
ARG
471
1
26
12
A
PRO
796
B
PRO
473
HELX_P
A
GLN
812
B
GLN
489
1
27
17
A
PRO
826
B
PRO
503
HELX_P
A
LYS
829
B
LYS
506
5
28
4
A
ALA
834
B
ALA
511
HELX_P
A
GLU
870
B
GLU
547
1
29
37
A
VAL
893
B
VAL
570
HELX_P
A
ASN
906
B
ASN
583
1
30
14
covale
1.592
both
B
DT
1002
A
O3'
DT
2
1_555
B
PST
1003
A
P
PST
3
1_555
metalc
2.083
A
ZN
3
D
ZN
ZN
1_555
A
HIS
901
B
NE2
HIS
578
1_555
metalc
1.919
A
ZN
3
D
ZN
ZN
1_555
A
GLU
905
B
OE2
GLU
582
1_555
metalc
1.947
A
ZN
320
C
ZN
ZN
1_555
A
ASP
882
B
OD2
ASP
559
1_555
TRANSFERASE/DNA
COMPLEX (DNA-BINDING PROTEIN-DNA), EXONUCLEASE, PHOSPHOROTHIOATE, TRANSFERASE-DNA COMPLEX
A
ASP
673
B
ASP
350
1
A
PRO
674
B
PRO
351
0.77
DPO1_ECOLI
UNP
2
P00582
1KSP
PDB
1
1KSP
324
928
1KSP
324
928
P00582
A
1
1
605
1001
1003
1KSP
1001
1003
1KSP
B
2
1
3
1
VAL
engineered mutation
MET
324
1KSP
A
P00582
UNP
324
1
2
4
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
SER
658
B
SER
335
A
HIS
660
B
HIS
337
A
SER
670
B
SER
347
A
THR
672
B
THR
349
A
VAL
916
B
VAL
593
A
GLY
921
B
GLY
598
A
TYR
699
B
TYR
376
A
TYR
706
B
TYR
383
A
GLU
883
B
GLU
560
A
HIS
889
B
HIS
566
A
VAL
874
B
VAL
551
A
VAL
880
B
VAL
557
A
TYR
814
B
TYR
491
A
GLU
816
B
GLU
493
A
ARG
822
B
ARG
499
A
TYR
824
B
TYR
501
A
ALA
353
B
ALA
30
A
THR
358
B
THR
35
A
LEU
368
B
LEU
45
A
GLU
376
B
GLU
53
A
VAL
379
B
VAL
56
A
PRO
384
B
PRO
61
A
LYS
416
B
LYS
93
A
GLY
418
B
GLY
95
A
ILE
438
B
ILE
115
A
ASP
441
B
ASP
118
Unknown
4
BINDING SITE FOR RESIDUE ZN A 320
A
ZN
320
Software
2
BINDING SITE FOR RESIDUE ZN A 3
A
ZN
3
Software
3
A
ASP
355
B
ASP
32
4
1_555
A
GLU
357
B
GLU
34
4
1_555
A
ASP
424
B
ASP
101
4
1_555
A
ASP
501
B
ASP
178
4
1_555
A
GLU
710
B
GLU
387
2
1_555
A
ASP
882
B
ASP
559
2
1_555
A
GLU
572
B
GLU
249
3
2_654
A
HIS
901
B
HIS
578
3
1_555
A
GLU
905
B
GLU
582
3
1_555
78
P 43