0.015925 0.000000 0.000000 0.000000 0.013711 0.000000 0.000000 0.000000 0.016381 0.00000 0.00000 0.00000 Bailey, S. Sedelnikova, S.E. Blackburn, G.M. Abdelghany, H.M. Baker, P.J. McLennan, A.G. Rafferty, J.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 62.794 72.934 61.046 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Structure STRUE6 2005 0969-2126 10 589 600 10.1016/S0969-2126(02)00746-3 11937063 The crystal structure of diadenosine tetraphosphate hydrolase from Caenorhabditis elegans in free and binary complex forms 2002 NE BIOCHIM.BIOPHYS.ACTA BBACAQ 0113 0006-3002 1550 27 36 10.1016/S0167-4838(01)00263-1 Cloning, characterisation and crystallisation of a diadenosine 5',5"'-P(1),P(4)-tetraphosphate pyrophosphohydrolase from Caenorhabditis elegans. 2001 10.2210/pdb1kt9/pdb pdb_00001kt9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-07-11 ADSC QUANTUM 4 MAD M x-ray 1 0.87 1.0 PX9.6 SRS 0.87 SYNCHROTRON SRS BEAMLINE PX9.6 15913.135 Diadenosine Tetraphosphate Hydrolase 3.6.1.17 1 man polymer 18.015 water 98 nat water no no MVVKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG KPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLAGF MVVKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG KPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLAGF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Caenorhabditis Escherichia Escherichia coli sample Y37H9A.6 6239 Caenorhabditis elegans 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID pET15b 1 2.20 43.97 VAPOR DIFFUSION, SITTING DROP 5.6 PEG 4000, ammonium acetate, sodium citrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 2002-05-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2002-01-15 REL HOH water HOH 1 2 HOH HOH 139 A HOH 2 2 HOH HOH 140 A HOH 3 2 HOH HOH 141 A HOH 4 2 HOH HOH 142 A HOH 5 2 HOH HOH 143 A HOH 6 2 HOH HOH 144 A HOH 7 2 HOH HOH 145 A HOH 8 2 HOH HOH 146 A HOH 9 2 HOH HOH 147 A HOH 10 2 HOH HOH 148 A HOH 11 2 HOH HOH 149 A HOH 12 2 HOH HOH 150 A HOH 13 2 HOH HOH 151 A HOH 14 2 HOH HOH 152 A HOH 15 2 HOH HOH 153 A HOH 16 2 HOH HOH 154 A HOH 17 2 HOH HOH 155 A HOH 18 2 HOH HOH 156 A HOH 19 2 HOH HOH 157 A HOH 20 2 HOH HOH 158 A HOH 21 2 HOH HOH 159 A HOH 22 2 HOH HOH 160 A HOH 23 2 HOH HOH 161 A HOH 24 2 HOH HOH 162 A HOH 25 2 HOH HOH 163 A HOH 26 2 HOH HOH 164 A HOH 27 2 HOH HOH 165 A HOH 28 2 HOH HOH 166 A HOH 29 2 HOH HOH 167 A HOH 30 2 HOH HOH 168 A HOH 31 2 HOH HOH 169 A HOH 32 2 HOH HOH 170 A HOH 33 2 HOH HOH 171 A HOH 34 2 HOH HOH 172 A HOH 35 2 HOH HOH 173 A HOH 36 2 HOH HOH 174 A HOH 37 2 HOH HOH 175 A HOH 38 2 HOH HOH 176 A HOH 39 2 HOH HOH 177 A HOH 40 2 HOH HOH 178 A HOH 41 2 HOH HOH 179 A HOH 42 2 HOH HOH 180 A HOH 43 2 HOH HOH 181 A HOH 44 2 HOH HOH 182 A HOH 45 2 HOH HOH 183 A HOH 46 2 HOH HOH 184 A HOH 47 2 HOH HOH 185 A HOH 48 2 HOH HOH 186 A HOH 49 2 HOH HOH 187 A HOH 50 2 HOH HOH 188 A HOH 51 2 HOH HOH 189 A HOH 53 2 HOH HOH 190 A HOH 54 2 HOH HOH 191 A HOH 55 2 HOH HOH 192 A HOH 56 2 HOH HOH 193 A HOH 57 2 HOH HOH 194 A HOH 59 2 HOH HOH 195 A HOH 61 2 HOH HOH 196 A HOH 62 2 HOH HOH 197 A HOH 63 2 HOH HOH 198 A HOH 65 2 HOH HOH 199 A HOH 66 2 HOH HOH 200 A HOH 67 2 HOH HOH 201 A HOH 68 2 HOH HOH 202 A HOH 69 2 HOH HOH 203 A HOH 70 2 HOH HOH 204 A HOH 71 2 HOH HOH 205 A HOH 77 2 HOH HOH 206 A HOH 79 2 HOH HOH 207 A HOH 81 2 HOH HOH 208 A HOH 84 2 HOH HOH 209 A HOH 85 2 HOH HOH 210 A HOH 86 2 HOH HOH 211 A HOH 90 2 HOH HOH 212 A HOH 91 2 HOH HOH 213 A HOH 93 2 HOH HOH 214 A HOH 97 2 HOH HOH 215 A HOH 99 2 HOH HOH 216 A HOH 100 2 HOH HOH 217 A HOH 101 2 HOH HOH 218 A HOH 102 2 HOH HOH 219 A HOH 103 2 HOH HOH 220 A HOH 105 2 HOH HOH 221 A HOH 106 2 HOH HOH 222 A HOH 108 2 HOH HOH 223 A HOH 114 2 HOH HOH 224 A HOH 115 2 HOH HOH 225 A HOH 116 2 HOH HOH 226 A HOH 121 2 HOH HOH 227 A HOH 123 2 HOH HOH 228 A HOH 124 2 HOH HOH 229 A HOH 132 2 HOH HOH 230 A HOH 133 2 HOH HOH 231 A HOH 134 2 HOH HOH 232 A HOH 136 2 HOH HOH 233 A HOH 141 2 HOH HOH 234 A HOH 142 2 HOH HOH 235 A HOH 148 2 HOH HOH 236 A MET 1 n 1 MET 1 A VAL 2 n 2 VAL 2 A VAL 3 n 3 VAL 3 A LYS 4 n 4 LYS 4 A ALA 5 n 5 ALA 5 A ALA 6 n 6 ALA 6 A GLY 7 n 7 GLY 7 A LEU 8 n 8 LEU 8 A VAL 9 n 9 VAL 9 A ILE 10 n 10 ILE 10 A TYR 11 n 11 TYR 11 A ARG 12 n 12 ARG 12 A LYS 13 n 13 LYS 13 A LEU 14 n 14 LEU 14 A ALA 15 n 15 ALA 15 A GLY 16 n 16 GLY 16 A LYS 17 n 17 LYS 17 A ILE 18 n 18 ILE 18 A GLU 19 n 19 GLU 19 A PHE 20 n 20 PHE 20 A LEU 21 n 21 LEU 21 A LEU 22 n 22 LEU 22 A LEU 23 n 23 LEU 23 A GLN 24 n 24 GLN 24 A ALA 25 n 25 ALA 25 A n 26 26 A TYR 27 n 27 TYR 27 A PRO 28 n 28 PRO 28 A PRO 29 n 29 PRO 29 A HIS 30 n 30 HIS 30 A HIS 31 n 31 HIS 31 A TRP 32 n 32 TRP 32 A THR 33 n 33 THR 33 A PRO 34 n 34 PRO 34 A PRO 35 n 35 PRO 35 A LYS 36 n 36 LYS 36 A GLY 37 n 37 GLY 37 A HIS 38 n 38 HIS 38 A VAL 39 n 39 VAL 39 A ASP 40 n 40 ASP 40 A PRO 41 n 41 PRO 41 A GLY 42 n 42 GLY 42 A GLU 43 n 43 GLU 43 A ASP 44 n 44 ASP 44 A GLU 45 n 45 GLU 45 A TRP 46 n 46 TRP 46 A GLN 47 n 47 GLN 47 A ALA 48 n 48 ALA 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A ARG 51 n 51 ARG 51 A GLU 52 n 52 GLU 52 A THR 53 n 53 THR 53 A LYS 54 n 54 LYS 54 A GLU 55 n 55 GLU 55 A GLU 56 n 56 GLU 56 A ALA 57 n 57 ALA 57 A ASN 58 n 58 ASN 58 A ILE 59 n 59 ILE 59 A THR 60 n 60 THR 60 A LYS 61 n 61 LYS 61 A GLU 62 n 62 GLU 62 A GLN 63 n 63 GLN 63 A LEU 64 n 64 LEU 64 A THR 65 n 65 THR 65 A ILE 66 n 66 ILE 66 A HIS 67 n 67 HIS 67 A GLU 68 n 68 GLU 68 A ASP 69 n 69 ASP 69 A CYS 70 n 70 CYS 70 A HIS 71 n 71 HIS 71 A GLU 72 n 72 GLU 72 A THR 73 n 73 THR 73 A LEU 74 n 74 LEU 74 A PHE 75 n 75 PHE 75 A TYR 76 n 76 TYR 76 A GLU 77 n 77 GLU 77 A ALA 78 n 78 ALA 78 A LYS 79 n 79 LYS 79 A GLY 80 n 80 GLY 80 A LYS 81 n 81 LYS 81 A PRO 82 n 82 PRO 82 A LYS 83 n 83 LYS 83 A SER 84 n 84 SER 84 A VAL 85 n 85 VAL 85 A LYS 86 n 86 LYS 86 A TYR 87 n 87 TYR 87 A TRP 88 n 88 TRP 88 A LEU 89 n 89 LEU 89 A ALA 90 n 90 ALA 90 A LYS 91 n 91 LYS 91 A LEU 92 n 92 LEU 92 A ASN 93 n 93 ASN 93 A ASN 94 n 94 ASN 94 A PRO 95 n 95 PRO 95 A ASP 96 n 96 ASP 96 A ASP 97 n 97 ASP 97 A VAL 98 n 98 VAL 98 A GLN 99 n 99 GLN 99 A LEU 100 n 100 LEU 100 A SER 101 n 101 SER 101 A HIS 102 n 102 HIS 102 A n 103 103 A n 104 104 A n 105 105 A ASN 106 n 106 ASN 106 A TRP 107 n 107 TRP 107 A LYS 108 n 108 LYS 108 A TRP 109 n 109 TRP 109 A CYS 110 n 110 CYS 110 A GLU 111 n 111 GLU 111 A LEU 112 n 112 LEU 112 A GLU 113 n 113 GLU 113 A ASP 114 n 114 ASP 114 A ALA 115 n 115 ALA 115 A ILE 116 n 116 ILE 116 A LYS 117 n 117 LYS 117 A ILE 118 n 118 ILE 118 A ALA 119 n 119 ALA 119 A ASP 120 n 120 ASP 120 A TYR 121 n 121 TYR 121 A ALA 122 n 122 ALA 122 A GLU 123 n 123 GLU 123 A MET 124 n 124 MET 124 A GLY 125 n 125 GLY 125 A SER 126 n 126 SER 126 A LEU 127 n 127 LEU 127 A LEU 128 n 128 LEU 128 A ARG 129 n 129 ARG 129 A LYS 130 n 130 LYS 130 A PHE 131 n 131 PHE 131 A SER 132 n 132 SER 132 A ALA 133 n 133 ALA 133 A PHE 134 n 134 PHE 134 A LEU 135 n 135 LEU 135 A ALA 136 n 136 ALA 136 A n 137 137 A n 138 138 A 3.0018 -0.6607 0.1886 2.4865 -0.2974 4.0488 -0.0196 -0.0561 -0.2416 -0.0172 -0.0036 0.1630 0.2561 -0.1076 0.0232 0.0159 -0.0126 -0.0051 0.0115 -0.0044 0.0480 refined 18.7636 14.3648 8.2546 X-RAY DIFFRACTION A 1 A 1 A 136 A 136 X-RAY DIFFRACTION 1 author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 37 A O GLY 37 A N ALA 6 A N ALA 6 A O VAL 3 A O VAL 3 A N SER 84 A N SER 84 A N LYS 91 A N LYS 91 A O THR 65 A O THR 65 A N TYR 76 A N TYR 76 A O LYS 83 A O LYS 83 A N SER 84 A N SER 84 A O VAL 3 A O VAL 3 A N LEU 14 A N LEU 14 A O LYS 17 A O LYS 17 A N LEU 23 A N LEU 23 A O THR 33 A O THR 33 A O THR 33 A O THR 33 A N LEU 23 A N LEU 23 A N LEU 22 A N LEU 22 A O LYS 108 A O LYS 108 1 A CG MET 1 A CG MET 1 1 Y 1 A SD MET 1 A SD MET 1 1 Y 1 A CE MET 1 A CE MET 1 1 Y 1 A CG LYS 13 A CG LYS 13 1 Y 1 A CD LYS 13 A CD LYS 13 1 Y 1 A CE LYS 13 A CE LYS 13 1 Y 1 A NZ LYS 13 A NZ LYS 13 1 Y 1 A CG LYS 17 A CG LYS 17 1 Y 1 A CD LYS 17 A CD LYS 17 1 Y 1 A CE LYS 17 A CE LYS 17 1 Y 1 A NZ LYS 17 A NZ LYS 17 1 Y 1 A CG LYS 61 A CG LYS 61 1 Y 1 A CD LYS 61 A CD LYS 61 1 Y 1 A CE LYS 61 A CE LYS 61 1 Y 1 A NZ LYS 61 A NZ LYS 61 1 Y 1 A CG GLU 68 A CG GLU 68 1 Y 1 A CD GLU 68 A CD GLU 68 1 Y 1 A OE1 GLU 68 A OE1 GLU 68 1 Y 1 A OE2 GLU 68 A OE2 GLU 68 1 Y 1 A CG ASP 69 A CG ASP 69 1 Y 1 A OD1 ASP 69 A OD1 ASP 69 1 Y 1 A OD2 ASP 69 A OD2 ASP 69 1 Y 1 A CG LYS 79 A CG LYS 79 1 Y 1 A CD LYS 79 A CD LYS 79 1 Y 1 A CE LYS 79 A CE LYS 79 1 Y 1 A NZ LYS 79 A NZ LYS 79 1 Y 1 A CG LYS 81 A CG LYS 81 1 Y 1 A CD LYS 81 A CD LYS 81 1 Y 1 A CE LYS 81 A CE LYS 81 1 Y 1 A NZ LYS 81 A NZ LYS 81 1 Y 1 A CG LYS 117 A CG LYS 117 1 Y 1 A CD LYS 117 A CD LYS 117 1 Y 1 A CE LYS 117 A CE LYS 117 1 Y 1 A NZ LYS 117 A NZ LYS 117 1 Y 1 A CG GLU 123 A CG GLU 123 1 Y 1 A CD GLU 123 A CD GLU 123 1 Y 1 A OE1 GLU 123 A OE1 GLU 123 1 Y 1 A OE2 GLU 123 A OE2 GLU 123 1 Y 1 A CG LYS 130 A CG LYS 130 1 Y 1 A CD LYS 130 A CD LYS 130 1 Y 1 A CE LYS 130 A CE LYS 130 1 Y 1 A NZ LYS 130 A NZ LYS 130 1 Y 1 A SER 26 A SER 26 1 Y 1 A GLU 103 A GLU 103 1 Y 1 A HIS 104 A HIS 104 1 Y 1 A GLN 105 A GLN 105 1 Y 1 A GLY 137 A GLY 137 1 Y 1 A PHE 138 A PHE 138 1 Y 1 5.58 0.90 118.30 123.88 A A A CB CG OD2 ASP ASP ASP 114 114 114 N 1 A VAL 2 -21.96 149.73 1 A ASP 120 38.76 51.88 14.727 0.59 0.00 0.00 0.98 0.00 -1.58 0.944 0.938 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2132000 0.1963100 0.1971500 1.98 20.00 474 9389 9389 4.8 98.0 5.165 0.149 RANDOM 1 THROUGHOUT 0 MAD .192 0.150 0.80 0.80 1.40 Engh & Huber BABINET MODEL WITH MASK 1.98 20.00 98 1130 0 0 1032 0.018 0.021 1061 0.001 0.020 927 1.627 1.929 1447 0.812 3.000 2148 5.248 3.000 129 15.810 15.000 170 0.096 0.200 158 0.007 0.020 1179 0.004 0.020 211 0.247 0.300 249 0.217 0.300 813 0.175 0.500 73 0.005 0.500 1 0.343 0.300 15 0.432 0.300 37 0.216 0.500 11 0.893 1.500 658 1.528 2.000 1043 2.248 3.000 403 3.416 4.500 404 0.2760000 0.2030000 2.031 38 695 20 1.98 18 1KT9 53439 9864 2 0 1 99.8 1.98 2.05 97.9 phasing MLPHARE refinement REFMAC 5.0 data reduction DENZO data scaling SCALEPACK Crystal Structure of C. elegans Ap4A Hydrolase 1 N N 2 N N A ASP 44 A ASP 44 HELX_P A ASN 58 A ASN 58 1 1 15 A THR 60 A THR 60 HELX_P A GLU 62 A GLU 62 5 2 3 A GLU 111 A GLU 111 HELX_P A ASP 120 A ASP 120 1 3 10 A TYR 121 A TYR 121 HELX_P A ALA 136 A ALA 136 1 4 16 HYDROLASE Nudix, HYDROLASE A PRO 28 A PRO 28 1 A PRO 29 A PRO 29 4.07 AP4A_CAEEL UNP 1 1 Q9U2M7 MVVKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG KPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLAGF 1 138 1KT9 1 138 Q9U2M7 A 1 1 138 10 anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 36 A LYS 36 A HIS 38 A HIS 38 A VAL 3 A VAL 3 A LEU 14 A LEU 14 A LYS 83 A LYS 83 A LEU 92 A LEU 92 A LEU 64 A LEU 64 A TYR 76 A TYR 76 A LYS 83 A LYS 83 A LEU 92 A LEU 92 A VAL 3 A VAL 3 A LEU 14 A LEU 14 A LYS 17 A LYS 17 A GLN 24 A GLN 24 A TRP 32 A TRP 32 A THR 33 A THR 33 A LYS 17 A LYS 17 A GLN 24 A GLN 24 A TRP 107 A TRP 107 A CYS 110 A CYS 110 20 C 2 2 21