0.025123 0.014505 -0.000000 0.000000 0.029010 -0.000000 0.000000 0.000000 0.014968 0.00000 0.00000 0.00000 Campbell, E.A. Muzzin, O. Chlenov, M. Sun, J.L. Olson, C.A. Weinman, O. Trester-Zedlitz, M.L. Darst, S.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 39.804 39.804 66.807 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N O N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 R C N 278 N O N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C N 301 N O N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C N 319 N C N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N doub N 292 N sing Y 293 N doub N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing US Mol.Cell MOCEFL 2168 1097-2765 9 527 539 10.1016/S1097-2765(02)00470-7 11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. 2002 10.2210/pdb1ku3/pdb pdb_00001ku3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93 1 CCD 2001-09-14 BRANDEIS - B4 Si 111 SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X25 NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X25 8737.127 sigma factor sigA region 4 (residues 366-438) L386M 1 man polymer 18.015 water 39 nat water no no SEELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE SEELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermus Escherichia Escherichia coli sample 271 Thermus aquaticus 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET21A 1 1.75 29.66 VAPOR DIFFUSION, HANGING DROP 6 MES, ammonium sulfate, magnesium chloride, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Data collection 1 0 2002-04-03 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details 1KU2 IS THE CRYSTAL STRUCTURE OF THERMUS AQUATICUS RNA POLYMERASE SIGMA SUBUNIT FRAGMENT CONTAINING REGIONS 1.2 TO 3.1. 1ku7 is the Crystal structure of Thermus aquatics RNA polymerase sigmaA subunit region 4 bound to -35 element DNA. RCSB Y RCSB 2002-01-21 REL HOH water TIP 501 2 HOH HOH 501 A TIP 502 2 HOH HOH 502 A TIP 503 2 HOH HOH 503 A TIP 504 2 HOH HOH 504 A TIP 505 2 HOH HOH 505 A TIP 506 2 HOH HOH 506 A TIP 507 2 HOH HOH 507 A TIP 508 2 HOH HOH 508 A TIP 509 2 HOH HOH 509 A TIP 510 2 HOH HOH 510 A TIP 511 2 HOH HOH 511 A TIP 512 2 HOH HOH 512 A TIP 513 2 HOH HOH 513 A TIP 514 2 HOH HOH 514 A TIP 515 2 HOH HOH 515 A TIP 516 2 HOH HOH 516 A TIP 517 2 HOH HOH 517 A TIP 518 2 HOH HOH 518 A TIP 519 2 HOH HOH 519 A TIP 520 2 HOH HOH 520 A TIP 521 2 HOH HOH 521 A TIP 522 2 HOH HOH 522 A TIP 523 2 HOH HOH 523 A TIP 524 2 HOH HOH 524 A TIP 525 2 HOH HOH 525 A TIP 526 2 HOH HOH 526 A TIP 527 2 HOH HOH 527 A TIP 528 2 HOH HOH 528 A TIP 529 2 HOH HOH 529 A TIP 530 2 HOH HOH 530 A TIP 531 2 HOH HOH 531 A TIP 532 2 HOH HOH 532 A TIP 533 2 HOH HOH 533 A TIP 534 2 HOH HOH 534 A TIP 535 2 HOH HOH 535 A TIP 536 2 HOH HOH 536 A TIP 537 2 HOH HOH 537 A TIP 538 2 HOH HOH 538 A TIP 539 2 HOH HOH 539 A n 1 366 A n 2 367 A ALA 368 n 3 GLU 368 A ALA 369 n 4 LEU 369 A ALA 370 n 5 GLU 370 A ALA 371 n 6 LYS 371 A ALA 372 n 7 ALA 372 A LEU 373 n 8 LEU 373 A SER 374 n 9 SER 374 A LYS 375 n 10 LYS 375 A LEU 376 n 11 LEU 376 A SER 377 n 12 SER 377 A GLU 378 n 13 GLU 378 A ARG 379 n 14 ARG 379 A GLU 380 n 15 GLU 380 A ALA 381 n 16 ALA 381 A MET 382 n 17 MET 382 A VAL 383 n 18 VAL 383 A LEU 384 n 19 LEU 384 A LYS 385 n 20 LYS 385 A MET 386 n 21 MET 386 A ARG 387 n 22 ARG 387 A LYS 388 n 23 LYS 388 A GLY 389 n 24 GLY 389 A LEU 390 n 25 LEU 390 A ILE 391 n 26 ILE 391 A ASP 392 n 27 ASP 392 A GLY 393 n 28 GLY 393 A ARG 394 n 29 ARG 394 A GLU 395 n 30 GLU 395 A HIS 396 n 31 HIS 396 A THR 397 n 32 THR 397 A LEU 398 n 33 LEU 398 A GLU 399 n 34 GLU 399 A GLU 400 n 35 GLU 400 A VAL 401 n 36 VAL 401 A GLY 402 n 37 GLY 402 A ALA 403 n 38 ALA 403 A TYR 404 n 39 TYR 404 A PHE 405 n 40 PHE 405 A GLY 406 n 41 GLY 406 A VAL 407 n 42 VAL 407 A THR 408 n 43 THR 408 A ARG 409 n 44 ARG 409 A GLU 410 n 45 GLU 410 A ARG 411 n 46 ARG 411 A ILE 412 n 47 ILE 412 A ARG 413 n 48 ARG 413 A GLN 414 n 49 GLN 414 A ILE 415 n 50 ILE 415 A GLU 416 n 51 GLU 416 A ASN 417 n 52 ASN 417 A LYS 418 n 53 LYS 418 A ALA 419 n 54 ALA 419 A LEU 420 n 55 LEU 420 A ARG 421 n 56 ARG 421 A LYS 422 n 57 LYS 422 A LEU 423 n 58 LEU 423 A LYS 424 n 59 LYS 424 A TYR 425 n 60 TYR 425 A HIS 426 n 61 HIS 426 A ALA 427 n 62 GLU 427 A ALA 428 n 63 SER 428 A n 64 429 A n 65 430 A n 66 431 A n 67 432 A n 68 433 A n 69 434 A n 70 435 A n 71 436 A n 72 437 A n 73 438 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG GLU 368 A CG GLU 3 1 Y 1 A CD GLU 368 A CD GLU 3 1 Y 1 A OE1 GLU 368 A OE1 GLU 3 1 Y 1 A OE2 GLU 368 A OE2 GLU 3 1 Y 1 A CG LEU 369 A CG LEU 4 1 Y 1 A CD1 LEU 369 A CD1 LEU 4 1 Y 1 A CD2 LEU 369 A CD2 LEU 4 1 Y 1 A CG GLU 370 A CG GLU 5 1 Y 1 A CD GLU 370 A CD GLU 5 1 Y 1 A OE1 GLU 370 A OE1 GLU 5 1 Y 1 A OE2 GLU 370 A OE2 GLU 5 1 Y 1 A CG LYS 371 A CG LYS 6 1 Y 1 A CD LYS 371 A CD LYS 6 1 Y 1 A CE LYS 371 A CE LYS 6 1 Y 1 A NZ LYS 371 A NZ LYS 6 1 Y 1 A CG GLU 427 A CG GLU 62 1 Y 1 A CD GLU 427 A CD GLU 62 1 Y 1 A OE1 GLU 427 A OE1 GLU 62 1 Y 1 A OE2 GLU 427 A OE2 GLU 62 1 Y 1 A OG SER 428 A OG SER 63 1 Y 1 A SER 366 A SER 1 1 Y 1 A GLU 367 A GLU 2 1 Y 1 A ARG 429 A ARG 64 1 Y 1 A THR 430 A THR 65 1 Y 1 A ARG 431 A ARG 66 1 Y 1 A LYS 432 A LYS 67 1 Y 1 A LEU 433 A LEU 68 1 Y 1 A ARG 434 A ARG 69 1 Y 1 A ASP 435 A ASP 70 1 Y 1 A PHE 436 A PHE 71 1 Y 1 A LEU 437 A LEU 72 1 Y 1 A GLU 438 A GLU 73 1 Y 1 A LEU 369 53.01 -95.31 1 A GLU 370 -140.45 -136.64 1 A ALA 372 -172.80 -47.52 1 A ILE 391 -92.55 -60.78 0.2520000 0.2180000 0.2180000 0.2180000 1.8 30 286 6039 5898 97.67 random 1 isotropic THROUGHOUT 0 0 MAD Engh & Huber 1.8 30 39 522 0 0 483 0.00508 1.066 1.8 30 1KU3 6121 5999 0 0 0.0470000 1 30 8.3 98 0.2370000 1.8 1.85 6.7 99.3 phasing MLPHARE refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK Crystal Structure of Thermus aquaticus RNA Polymerase Sigma Subunit Fragment, Region 4 1 N N 2 N N A SER 377 A SER 12 HELX_P A LYS 388 A LYS 23 1 1 12 A THR 397 A THR 32 HELX_P A GLY 406 A GLY 41 1 2 10 A THR 408 A THR 43 HELX_P A HIS 426 A HIS 61 1 3 19 TRANSCRIPTION helix-turn-helix, TRANSCRIPTION Q9EZJ8_THEAQ UNP 1 366 Q9EZJ8 SEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE 366 438 1KU3 366 438 Q9EZJ8 A 1 1 73 1 LEU engineered mutation MET 386 1KU3 A Q9EZJ8 UNP 386 21 152 P 31 2 1