0.01756
0.01014
0.00000
0.00000
0.02028
0.00000
0.00000
0.00000
0.00477
0.00000
0.00000
0.00000
Ray, S.S.
Bonanno, J.B.
Chen, H.
de Lencastre, H.
Wu, S.
Tomasz, A.
0000-0002-2487-9713
Burley, S.K.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
56.939
56.939
209.515
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
50
170
173
10.1002/prot.10272
12471609
X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S.
aureus
2002
0000-0002-2487-9713
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-01-19
BRANDEIS - B1
Si 111
MAD
M
x-ray
1
0.9793
1.0
0.9790
1.0
0.9686
1.0
X12C
NSLS
0.9793, 0.9790, 0.9686
SYNCHROTRON
NSLS BEAMLINE X12C
NYSGRC target T088
17875.258
hypothetical protein MJ223
2
man
polymer
18.015
water
86
nat
water
HYPOTHETICAL PROTEIN MJ1563
no
yes
(MSE)II(MSE)EEAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDI(MSE)EELKISKGNVS(MSE)SLKK
LEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEEEKEFIKQKIKGIER(MSE)KKIS
EKILEALNDLDN
MIIMEEAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER
KNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEEEKEFIKQKIKGIERMKKISEKILEALNDLDN
A,B
NYSGXRC-T136
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanocaldococcus
Escherichia
Escherichia coli
sample
Mj223
2190
Methanocaldococcus jannaschii
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
variation on pET18B
pSKB2
1
2.74
55.15
VAPOR DIFFUSION, HANGING DROP
8.0
10% dioxane, 30% PEG 8000, TRIS pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
software
audit_author
citation_author
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Structure summary
1
0
2002-12-25
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-02-03
_software.classification
_software.name
_software.version
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2002-01-21
REL
HOH
water
HOH
153
2
HOH
HOH
153
A
HOH
155
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
160
2
HOH
HOH
160
A
HOH
163
2
HOH
HOH
163
A
HOH
164
2
HOH
HOH
164
A
HOH
165
2
HOH
HOH
165
A
HOH
166
2
HOH
HOH
166
A
HOH
167
2
HOH
HOH
167
A
HOH
169
2
HOH
HOH
169
A
HOH
170
2
HOH
HOH
170
A
HOH
175
2
HOH
HOH
175
A
HOH
177
2
HOH
HOH
177
A
HOH
178
2
HOH
HOH
178
A
HOH
182
2
HOH
HOH
182
A
HOH
185
2
HOH
HOH
185
A
HOH
186
2
HOH
HOH
186
A
HOH
188
2
HOH
HOH
188
A
HOH
189
2
HOH
HOH
189
A
HOH
191
2
HOH
HOH
191
A
HOH
193
2
HOH
HOH
193
A
HOH
194
2
HOH
HOH
194
A
HOH
195
2
HOH
HOH
195
A
HOH
196
2
HOH
HOH
196
A
HOH
197
2
HOH
HOH
197
A
HOH
198
2
HOH
HOH
198
A
HOH
199
2
HOH
HOH
199
A
HOH
203
2
HOH
HOH
203
A
HOH
205
2
HOH
HOH
205
A
HOH
206
2
HOH
HOH
206
A
HOH
210
2
HOH
HOH
210
A
HOH
213
2
HOH
HOH
213
A
HOH
214
2
HOH
HOH
214
A
HOH
216
2
HOH
HOH
216
A
HOH
222
2
HOH
HOH
222
A
HOH
223
2
HOH
HOH
223
A
HOH
224
2
HOH
HOH
224
A
HOH
231
2
HOH
HOH
231
A
HOH
234
2
HOH
HOH
234
A
HOH
235
2
HOH
HOH
235
A
HOH
152
2
HOH
HOH
152
B
HOH
154
2
HOH
HOH
154
B
HOH
158
2
HOH
HOH
158
B
HOH
159
2
HOH
HOH
159
B
HOH
161
2
HOH
HOH
161
B
HOH
162
2
HOH
HOH
162
B
HOH
168
2
HOH
HOH
168
B
HOH
171
2
HOH
HOH
171
B
HOH
172
2
HOH
HOH
172
B
HOH
173
2
HOH
HOH
173
B
HOH
174
2
HOH
HOH
174
B
HOH
176
2
HOH
HOH
176
B
HOH
179
2
HOH
HOH
179
B
HOH
180
2
HOH
HOH
180
B
HOH
181
2
HOH
HOH
181
B
HOH
183
2
HOH
HOH
183
B
HOH
184
2
HOH
HOH
184
B
HOH
187
2
HOH
HOH
187
B
HOH
190
2
HOH
HOH
190
B
HOH
192
2
HOH
HOH
192
B
HOH
200
2
HOH
HOH
200
B
HOH
201
2
HOH
HOH
201
B
HOH
202
2
HOH
HOH
202
B
HOH
204
2
HOH
HOH
204
B
HOH
207
2
HOH
HOH
207
B
HOH
208
2
HOH
HOH
208
B
HOH
209
2
HOH
HOH
209
B
HOH
211
2
HOH
HOH
211
B
HOH
212
2
HOH
HOH
212
B
HOH
215
2
HOH
HOH
215
B
HOH
217
2
HOH
HOH
217
B
HOH
218
2
HOH
HOH
218
B
HOH
219
2
HOH
HOH
219
B
HOH
220
2
HOH
HOH
220
B
HOH
221
2
HOH
HOH
221
B
HOH
225
2
HOH
HOH
225
B
HOH
226
2
HOH
HOH
226
B
HOH
227
2
HOH
HOH
227
B
HOH
228
2
HOH
HOH
228
B
HOH
229
2
HOH
HOH
229
B
HOH
230
2
HOH
HOH
230
B
HOH
232
2
HOH
HOH
232
B
HOH
233
2
HOH
HOH
233
B
HOH
236
2
HOH
HOH
236
B
HOH
237
2
HOH
HOH
237
B
MSE
1
n
1
MSE
1
A
ILE
2
n
2
ILE
2
A
ILE
3
n
3
ILE
3
A
MSE
4
n
4
MSE
4
A
GLU
5
n
5
GLU
5
A
GLU
6
n
6
GLU
6
A
ALA
7
n
7
ALA
7
A
LYS
8
n
8
LYS
8
A
LYS
9
n
9
LYS
9
A
LEU
10
n
10
LEU
10
A
ILE
11
n
11
ILE
11
A
ILE
12
n
12
ILE
12
A
GLU
13
n
13
GLU
13
A
LEU
14
n
14
LEU
14
A
PHE
15
n
15
PHE
15
A
SER
16
n
16
SER
16
A
GLU
17
n
17
GLU
17
A
LEU
18
n
18
LEU
18
A
ALA
19
n
19
ALA
19
A
LYS
20
n
20
LYS
20
A
ILE
21
n
21
ILE
21
A
HIS
22
n
22
HIS
22
A
GLY
23
n
23
GLY
23
A
LEU
24
n
24
LEU
24
A
ASN
25
n
25
ASN
25
A
LYS
26
n
26
LYS
26
A
SER
27
n
27
SER
27
A
VAL
28
n
28
VAL
28
A
GLY
29
n
29
GLY
29
A
ALA
30
n
30
ALA
30
A
VAL
31
n
31
VAL
31
A
TYR
32
n
32
TYR
32
A
ALA
33
n
33
ALA
33
A
ILE
34
n
34
ILE
34
A
LEU
35
n
35
LEU
35
A
TYR
36
n
36
TYR
36
A
LEU
37
n
37
LEU
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
LYS
40
n
40
LYS
40
A
PRO
41
n
41
PRO
41
A
LEU
42
n
42
LEU
42
A
THR
43
n
43
THR
43
A
ILE
44
n
44
ILE
44
A
SER
45
n
45
SER
45
A
ASP
46
n
46
ASP
46
A
ILE
47
n
47
ILE
47
A
MSE
48
n
48
MSE
48
A
GLU
49
n
49
GLU
49
A
GLU
50
n
50
GLU
50
A
LEU
51
n
51
LEU
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
SER
54
n
54
SER
54
A
LYS
55
n
55
LYS
55
A
GLY
56
n
56
GLY
56
A
ASN
57
n
57
ASN
57
A
VAL
58
n
58
VAL
58
A
SER
59
n
59
SER
59
A
MSE
60
n
60
MSE
60
A
SER
61
n
61
SER
61
A
LEU
62
n
62
LEU
62
A
LYS
63
n
63
LYS
63
A
LYS
64
n
64
LYS
64
A
LEU
65
n
65
LEU
65
A
GLU
66
n
66
GLU
66
A
GLU
67
n
67
GLU
67
A
LEU
68
n
68
LEU
68
A
GLY
69
n
69
GLY
69
A
PHE
70
n
70
PHE
70
A
VAL
71
n
71
VAL
71
A
ARG
72
n
72
ARG
72
A
LYS
73
n
73
LYS
73
A
VAL
74
n
74
VAL
74
A
TRP
75
n
75
TRP
75
A
ILE
76
n
76
ILE
76
A
LYS
77
n
77
LYS
77
A
GLY
78
n
78
GLY
78
A
GLU
79
n
79
GLU
79
A
ARG
80
n
80
ARG
80
A
LYS
81
n
81
LYS
81
A
ASN
82
n
82
ASN
82
A
TYR
83
n
83
TYR
83
A
TYR
84
n
84
TYR
84
A
GLU
85
n
85
GLU
85
A
ALA
86
n
86
ALA
86
A
VAL
87
n
87
VAL
87
A
ASP
88
n
88
ASP
88
A
GLY
89
n
89
GLY
89
A
PHE
90
n
90
PHE
90
A
SER
91
n
91
SER
91
A
SER
92
n
92
SER
92
A
ILE
93
n
93
ILE
93
A
LYS
94
n
94
LYS
94
A
ASP
95
n
95
ASP
95
A
ILE
96
n
96
ILE
96
A
ALA
97
n
97
ALA
97
A
LYS
98
n
98
LYS
98
A
ARG
99
n
99
ARG
99
A
LYS
100
n
100
LYS
100
A
HIS
101
n
101
HIS
101
A
ASP
102
n
102
ASP
102
A
LEU
103
n
103
LEU
103
A
ILE
104
n
104
ILE
104
A
ALA
105
n
105
ALA
105
A
LYS
106
n
106
LYS
106
A
THR
107
n
107
THR
107
A
TYR
108
n
108
TYR
108
A
GLU
109
n
109
GLU
109
A
ASP
110
n
110
ASP
110
A
LEU
111
n
111
LEU
111
A
LYS
112
n
112
LYS
112
A
LYS
113
n
113
LYS
113
A
LEU
114
n
114
LEU
114
A
GLU
115
n
115
GLU
115
A
GLU
116
n
116
GLU
116
A
LYS
117
n
117
LYS
117
A
CYS
118
n
118
CYS
118
A
ASN
119
n
119
ASN
119
A
GLU
120
n
120
GLU
120
A
GLU
121
n
121
GLU
121
A
GLU
122
n
122
GLU
122
A
LYS
123
n
123
LYS
123
A
GLU
124
n
124
GLU
124
A
PHE
125
n
125
PHE
125
A
ILE
126
n
126
ILE
126
A
LYS
127
n
127
LYS
127
A
GLN
128
n
128
GLN
128
A
LYS
129
n
129
LYS
129
A
ILE
130
n
130
ILE
130
A
LYS
131
n
131
LYS
131
A
GLY
132
n
132
GLY
132
A
ILE
133
n
133
ILE
133
A
GLU
134
n
134
GLU
134
A
ARG
135
n
135
ARG
135
A
MSE
136
n
136
MSE
136
A
LYS
137
n
137
LYS
137
A
LYS
138
n
138
LYS
138
A
ILE
139
n
139
ILE
139
A
SER
140
n
140
SER
140
A
GLU
141
n
141
GLU
141
A
LYS
142
n
142
LYS
142
A
ILE
143
n
143
ILE
143
A
LEU
144
n
144
LEU
144
A
GLU
145
n
145
GLU
145
A
ALA
146
n
146
ALA
146
A
LEU
147
n
147
LEU
147
A
ASN
148
n
148
ASN
148
A
ASP
149
n
149
ASP
149
A
LEU
150
n
150
LEU
150
A
ASP
151
n
151
ASP
151
A
n
152
152
A
MSE
1001
n
1
MSE
1001
B
ILE
1002
n
2
ILE
1002
B
ILE
1003
n
3
ILE
1003
B
MSE
1004
n
4
MSE
1004
B
GLU
1005
n
5
GLU
1005
B
GLU
1006
n
6
GLU
1006
B
ALA
1007
n
7
ALA
1007
B
LYS
1008
n
8
LYS
1008
B
LYS
1009
n
9
LYS
1009
B
LEU
1010
n
10
LEU
1010
B
ILE
1011
n
11
ILE
1011
B
ILE
1012
n
12
ILE
1012
B
GLU
1013
n
13
GLU
1013
B
LEU
1014
n
14
LEU
1014
B
PHE
1015
n
15
PHE
1015
B
SER
1016
n
16
SER
1016
B
GLU
1017
n
17
GLU
1017
B
LEU
1018
n
18
LEU
1018
B
ALA
1019
n
19
ALA
1019
B
LYS
1020
n
20
LYS
1020
B
ILE
1021
n
21
ILE
1021
B
HIS
1022
n
22
HIS
1022
B
GLY
1023
n
23
GLY
1023
B
LEU
1024
n
24
LEU
1024
B
ASN
1025
n
25
ASN
1025
B
LYS
1026
n
26
LYS
1026
B
SER
1027
n
27
SER
1027
B
VAL
1028
n
28
VAL
1028
B
GLY
1029
n
29
GLY
1029
B
ALA
1030
n
30
ALA
1030
B
VAL
1031
n
31
VAL
1031
B
TYR
1032
n
32
TYR
1032
B
ALA
1033
n
33
ALA
1033
B
ILE
1034
n
34
ILE
1034
B
LEU
1035
n
35
LEU
1035
B
TYR
1036
n
36
TYR
1036
B
LEU
1037
n
37
LEU
1037
B
SER
1038
n
38
SER
1038
B
ASP
1039
n
39
ASP
1039
B
LYS
1040
n
40
LYS
1040
B
PRO
1041
n
41
PRO
1041
B
LEU
1042
n
42
LEU
1042
B
THR
1043
n
43
THR
1043
B
ILE
1044
n
44
ILE
1044
B
SER
1045
n
45
SER
1045
B
ASP
1046
n
46
ASP
1046
B
ILE
1047
n
47
ILE
1047
B
MSE
1048
n
48
MSE
1048
B
GLU
1049
n
49
GLU
1049
B
GLU
1050
n
50
GLU
1050
B
LEU
1051
n
51
LEU
1051
B
LYS
1052
n
52
LYS
1052
B
ILE
1053
n
53
ILE
1053
B
SER
1054
n
54
SER
1054
B
LYS
1055
n
55
LYS
1055
B
GLY
1056
n
56
GLY
1056
B
ASN
1057
n
57
ASN
1057
B
VAL
1058
n
58
VAL
1058
B
SER
1059
n
59
SER
1059
B
MSE
1060
n
60
MSE
1060
B
SER
1061
n
61
SER
1061
B
LEU
1062
n
62
LEU
1062
B
LYS
1063
n
63
LYS
1063
B
LYS
1064
n
64
LYS
1064
B
LEU
1065
n
65
LEU
1065
B
GLU
1066
n
66
GLU
1066
B
GLU
1067
n
67
GLU
1067
B
LEU
1068
n
68
LEU
1068
B
GLY
1069
n
69
GLY
1069
B
PHE
1070
n
70
PHE
1070
B
VAL
1071
n
71
VAL
1071
B
ARG
1072
n
72
ARG
1072
B
LYS
1073
n
73
LYS
1073
B
VAL
1074
n
74
VAL
1074
B
TRP
1075
n
75
TRP
1075
B
ILE
1076
n
76
ILE
1076
B
LYS
1077
n
77
LYS
1077
B
GLY
1078
n
78
GLY
1078
B
GLU
1079
n
79
GLU
1079
B
ARG
1080
n
80
ARG
1080
B
LYS
1081
n
81
LYS
1081
B
ASN
1082
n
82
ASN
1082
B
TYR
1083
n
83
TYR
1083
B
TYR
1084
n
84
TYR
1084
B
GLU
1085
n
85
GLU
1085
B
ALA
1086
n
86
ALA
1086
B
VAL
1087
n
87
VAL
1087
B
ASP
1088
n
88
ASP
1088
B
GLY
1089
n
89
GLY
1089
B
PHE
1090
n
90
PHE
1090
B
SER
1091
n
91
SER
1091
B
SER
1092
n
92
SER
1092
B
ILE
1093
n
93
ILE
1093
B
LYS
1094
n
94
LYS
1094
B
ASP
1095
n
95
ASP
1095
B
ILE
1096
n
96
ILE
1096
B
ALA
1097
n
97
ALA
1097
B
LYS
1098
n
98
LYS
1098
B
ARG
1099
n
99
ARG
1099
B
LYS
1100
n
100
LYS
1100
B
HIS
1101
n
101
HIS
1101
B
ASP
1102
n
102
ASP
1102
B
LEU
1103
n
103
LEU
1103
B
ILE
1104
n
104
ILE
1104
B
ALA
1105
n
105
ALA
1105
B
LYS
1106
n
106
LYS
1106
B
THR
1107
n
107
THR
1107
B
TYR
1108
n
108
TYR
1108
B
GLU
1109
n
109
GLU
1109
B
ASP
1110
n
110
ASP
1110
B
LEU
1111
n
111
LEU
1111
B
LYS
1112
n
112
LYS
1112
B
LYS
1113
n
113
LYS
1113
B
LEU
1114
n
114
LEU
1114
B
GLU
1115
n
115
GLU
1115
B
GLU
1116
n
116
GLU
1116
B
LYS
1117
n
117
LYS
1117
B
CYS
1118
n
118
CYS
1118
B
ASN
1119
n
119
ASN
1119
B
GLU
1120
n
120
GLU
1120
B
GLU
1121
n
121
GLU
1121
B
GLU
1122
n
122
GLU
1122
B
LYS
1123
n
123
LYS
1123
B
GLU
1124
n
124
GLU
1124
B
PHE
1125
n
125
PHE
1125
B
ILE
1126
n
126
ILE
1126
B
LYS
1127
n
127
LYS
1127
B
GLN
1128
n
128
GLN
1128
B
LYS
1129
n
129
LYS
1129
B
ILE
1130
n
130
ILE
1130
B
LYS
1131
n
131
LYS
1131
B
GLY
1132
n
132
GLY
1132
B
ILE
1133
n
133
ILE
1133
B
GLU
1134
n
134
GLU
1134
B
ARG
1135
n
135
ARG
1135
B
MSE
1136
n
136
MSE
1136
B
LYS
1137
n
137
LYS
1137
B
LYS
1138
n
138
LYS
1138
B
ILE
1139
n
139
ILE
1139
B
SER
1140
n
140
SER
1140
B
GLU
1141
n
141
GLU
1141
B
LYS
1142
n
142
LYS
1142
B
ILE
1143
n
143
ILE
1143
B
LEU
1144
n
144
LEU
1144
B
GLU
1145
n
145
GLU
1145
B
ALA
1146
n
146
ALA
1146
B
LEU
1147
n
147
LEU
1147
B
ASN
1148
n
148
ASN
1148
B
ASP
1149
n
149
ASP
1149
B
LEU
1150
n
150
LEU
1150
B
ASP
1151
n
151
ASP
1151
B
n
152
1152
B
author_and_software_defined_assembly
PISA
2
dimeric
4550
-52
17200
A
MSE
1
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
4
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
48
SELENOMETHIONINE
A
MSE
48
MET
A
MSE
60
SELENOMETHIONINE
A
MSE
60
MET
A
MSE
136
SELENOMETHIONINE
A
MSE
136
MET
B
MSE
1001
SELENOMETHIONINE
B
MSE
1
MET
B
MSE
1004
SELENOMETHIONINE
B
MSE
4
MET
B
MSE
1048
SELENOMETHIONINE
B
MSE
48
MET
B
MSE
1060
SELENOMETHIONINE
B
MSE
60
MET
B
MSE
1136
SELENOMETHIONINE
B
MSE
136
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
42
A
N
LEU
42
A
O
TYR
84
A
O
TYR
84
A
O
TYR
83
A
O
TYR
83
A
N
VAL
74
A
N
VAL
74
B
N
VAL
1074
B
N
VAL
74
B
O
TYR
1083
B
O
TYR
83
1
A
ASN
152
A
ASN
152
1
Y
1
B
ASN
1152
B
ASN
152
1
Y
1
A
LYS
52
45.37
74.19
1
A
MSE
60
-52.32
-73.67
1
A
ALA
105
-41.62
-72.87
1
A
CYS
118
-51.44
94.61
1
A
GLU
120
86.70
-98.66
1
A
ASN
148
-98.83
44.52
1
B
LYS
1052
58.60
89.05
1
B
SER
1054
-42.75
162.55
1
B
ASP
1088
-50.22
102.43
1
B
CYS
1118
-62.57
95.78
1
B
ASN
1119
-131.07
-157.19
1
B
GLU
1120
64.99
-105.64
1
B
ASN
1148
-94.23
42.90
0.299
-9.420
0.000
0.299
0.000
-0.599
Data were twinned and appeared to have P6(5)22 symmetry. Refined as space group P6(5) with twinning fraction of 0.485.
0.28
0.241
0.245
0.245
2.8
20
849
9426
9257
random
1
THROUGHOUT
0
0
MAD
Engh & Huber
2.8
20
86
2538
0
0
2452
0.010
1.47
1.15
1.83
2.02
3.00
66
2.8
30
1KU9
9501
9454
1
-3
0.048
0.048
1
38.3
5.7
99.5
0.208
2.8
2.9
7.7
941
0.208
5
99.4
data collection
MARMAD
data reduction
DENZO
data scaling
SCALEPACK
phasing
SnB
phasing
MLPHARE
model building
DM
refinement
CNS
1.0
data reduction
MARMAD
phasing
DM
hypothetical protein MJ223
X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus
1
N
N
1
N
N
2
N
N
2
N
N
asymmetric unit represents the putative biological assembly
A
ILE
2
A
ILE
2
HELX_P
A
HIS
22
A
HIS
22
1
1
21
A
ASN
25
A
ASN
25
HELX_P
A
SER
38
A
SER
38
1
2
14
A
ILE
44
A
ILE
44
HELX_P
A
LYS
52
A
LYS
52
1
3
9
A
SER
54
A
SER
54
HELX_P
A
LEU
68
A
LEU
68
1
4
15
A
ASP
88
A
ASP
88
HELX_P
A
CYS
118
A
CYS
118
1
5
31
A
GLU
122
A
GLU
122
HELX_P
A
GLU
134
A
GLU
134
1
6
13
A
GLU
134
A
GLU
134
HELX_P
A
ALA
146
A
ALA
146
1
7
13
A
LEU
147
A
LEU
147
HELX_P
A
LEU
150
A
LEU
150
5
8
4
B
ILE
1002
B
ILE
2
HELX_P
B
HIS
1022
B
HIS
22
1
9
21
B
ASN
1025
B
ASN
25
HELX_P
B
SER
1038
B
SER
38
1
10
14
B
THR
1043
B
THR
43
HELX_P
B
LYS
1052
B
LYS
52
1
11
10
B
SER
1054
B
SER
54
HELX_P
B
GLY
1069
B
GLY
69
1
12
16
B
ASP
1088
B
ASP
88
HELX_P
B
CYS
1118
B
CYS
118
1
13
31
B
GLU
1122
B
GLU
122
HELX_P
B
GLU
1134
B
GLU
134
1
14
13
B
GLU
1134
B
GLU
134
HELX_P
B
ALA
1146
B
ALA
146
1
15
13
B
LEU
1147
B
LEU
147
HELX_P
B
LEU
1150
B
LEU
150
5
16
4
covale
1.330
both
A
MSE
1
A
C
MSE
1
1_555
A
ILE
2
A
N
ILE
2
1_555
covale
1.325
both
A
ILE
3
A
C
ILE
3
1_555
A
MSE
4
A
N
MSE
4
1_555
covale
1.323
both
A
MSE
4
A
C
MSE
4
1_555
A
GLU
5
A
N
GLU
5
1_555
covale
1.318
both
A
ILE
47
A
C
ILE
47
1_555
A
MSE
48
A
N
MSE
48
1_555
covale
1.320
both
A
MSE
48
A
C
MSE
48
1_555
A
GLU
49
A
N
GLU
49
1_555
covale
1.330
both
A
SER
59
A
C
SER
59
1_555
A
MSE
60
A
N
MSE
60
1_555
covale
1.329
both
A
MSE
60
A
C
MSE
60
1_555
A
SER
61
A
N
SER
61
1_555
covale
1.326
both
A
ARG
135
A
C
ARG
135
1_555
A
MSE
136
A
N
MSE
136
1_555
covale
1.328
both
A
MSE
136
A
C
MSE
136
1_555
A
LYS
137
A
N
LYS
137
1_555
covale
1.328
both
B
MSE
1001
B
C
MSE
1
1_555
B
ILE
1002
B
N
ILE
2
1_555
covale
1.320
both
B
ILE
1003
B
C
ILE
3
1_555
B
MSE
1004
B
N
MSE
4
1_555
covale
1.318
both
B
MSE
1004
B
C
MSE
4
1_555
B
GLU
1005
B
N
GLU
5
1_555
covale
1.325
both
B
ILE
1047
B
C
ILE
47
1_555
B
MSE
1048
B
N
MSE
48
1_555
covale
1.324
both
B
MSE
1048
B
C
MSE
48
1_555
B
GLU
1049
B
N
GLU
49
1_555
covale
1.322
both
B
SER
1059
B
C
SER
59
1_555
B
MSE
1060
B
N
MSE
60
1_555
covale
1.330
both
B
MSE
1060
B
C
MSE
60
1_555
B
SER
1061
B
N
SER
61
1_555
covale
1.324
both
B
ARG
1135
B
C
ARG
135
1_555
B
MSE
1136
B
N
MSE
136
1_555
covale
1.323
both
B
MSE
1136
B
C
MSE
136
1_555
B
LYS
1137
B
N
LYS
137
1_555
DNA BINDING PROTEIN
putative transcription factor, homodimeric winged-helix fold, STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, DNA BINDING PROTEIN
Y1563_METJA
UNP
1
1
Q58958
MIIMEEAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER
KNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEEEKEFIKQKIKGIERMKKISEKILEALNDLDN
1
152
1KU9
1
152
Q58958
A
1
1
152
1
152
1KU9
1001
1152
Q58958
B
1
1
152
1
MET
modified residue
MSE
1
1KU9
A
Q58958
UNP
1
1
1
MET
modified residue
MSE
4
1KU9
A
Q58958
UNP
4
4
1
MET
modified residue
MSE
48
1KU9
A
Q58958
UNP
48
48
1
MET
modified residue
MSE
60
1KU9
A
Q58958
UNP
60
60
1
MET
modified residue
MSE
136
1KU9
A
Q58958
UNP
136
136
2
MET
modified residue
MSE
1001
1KU9
B
Q58958
UNP
1
1
2
MET
modified residue
MSE
1004
1KU9
B
Q58958
UNP
4
4
2
MET
modified residue
MSE
1048
1KU9
B
Q58958
UNP
48
48
2
MET
modified residue
MSE
1060
1KU9
B
Q58958
UNP
60
60
2
MET
modified residue
MSE
1136
1KU9
B
Q58958
UNP
136
136
3
2
anti-parallel
anti-parallel
anti-parallel
A
LEU
42
A
LEU
42
A
THR
43
A
THR
43
A
TYR
83
A
TYR
83
A
ALA
86
A
ALA
86
A
VAL
71
A
VAL
71
A
VAL
74
A
VAL
74
B
VAL
1071
B
VAL
71
B
VAL
1074
B
VAL
74
B
TYR
1083
B
TYR
83
B
ALA
1086
B
ALA
86
170
P 65