1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Sorimachi, K.
Jacks, A.J.
Le Gal-Coeffet, M.-F.
Williamson, G.
Archer, D.B.
Williamson, M.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
259
970
987
10.1006/jmbi.1996.0374
8683599
Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopy.
1996
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
233
568
1H and 15N Assignments and Secondary Structure of the Starch-Binding Domain of Glucoamylase from Aspergillus Niger
1995
10.2210/pdb1kum/pdb
pdb_00001kum
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
PH 5.2, 313 K
11884.820
GLUCOAMYLASE
3.2.1.3
BINDING DOMAIN, RESIDUES 509 - 616
1
man
polymer
1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE
no
no
CTTPTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSV
EWESDPNREYTVPQACGTSTATVTDTWR
CTTPTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSV
EWESDPNREYTVPQACGTSTATVTDTWR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aspergillus
AB4.1
Aspergillus
sample
A. NIGER GLAA
5061
Aspergillus niger
A. NIGER GLAA
5061
Aspergillus niger
PIGF
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1996-07-11
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1996-01-12
REL
100
1
5.2
313
K
BRUNGER
refinement
X-PLOR
3.1
CYS
509
n
1
CYS
509
A
THR
510
n
2
THR
510
A
THR
511
n
3
THR
511
A
PRO
512
n
4
PRO
512
A
THR
513
n
5
THR
513
A
ALA
514
n
6
ALA
514
A
VAL
515
n
7
VAL
515
A
ALA
516
n
8
ALA
516
A
VAL
517
n
9
VAL
517
A
THR
518
n
10
THR
518
A
PHE
519
n
11
PHE
519
A
ASP
520
n
12
ASP
520
A
LEU
521
n
13
LEU
521
A
THR
522
n
14
THR
522
A
ALA
523
n
15
ALA
523
A
THR
524
n
16
THR
524
A
THR
525
n
17
THR
525
A
THR
526
n
18
THR
526
A
TYR
527
n
19
TYR
527
A
GLY
528
n
20
GLY
528
A
GLU
529
n
21
GLU
529
A
ASN
530
n
22
ASN
530
A
ILE
531
n
23
ILE
531
A
TYR
532
n
24
TYR
532
A
LEU
533
n
25
LEU
533
A
VAL
534
n
26
VAL
534
A
GLY
535
n
27
GLY
535
A
SER
536
n
28
SER
536
A
ILE
537
n
29
ILE
537
A
SER
538
n
30
SER
538
A
GLN
539
n
31
GLN
539
A
LEU
540
n
32
LEU
540
A
GLY
541
n
33
GLY
541
A
ASP
542
n
34
ASP
542
A
TRP
543
n
35
TRP
543
A
GLU
544
n
36
GLU
544
A
THR
545
n
37
THR
545
A
SER
546
n
38
SER
546
A
ASP
547
n
39
ASP
547
A
GLY
548
n
40
GLY
548
A
ILE
549
n
41
ILE
549
A
ALA
550
n
42
ALA
550
A
LEU
551
n
43
LEU
551
A
SER
552
n
44
SER
552
A
ALA
553
n
45
ALA
553
A
ASP
554
n
46
ASP
554
A
LYS
555
n
47
LYS
555
A
TYR
556
n
48
TYR
556
A
THR
557
n
49
THR
557
A
SER
558
n
50
SER
558
A
SER
559
n
51
SER
559
A
ASP
560
n
52
ASP
560
A
PRO
561
n
53
PRO
561
A
LEU
562
n
54
LEU
562
A
TRP
563
n
55
TRP
563
A
TYR
564
n
56
TYR
564
A
VAL
565
n
57
VAL
565
A
THR
566
n
58
THR
566
A
VAL
567
n
59
VAL
567
A
THR
568
n
60
THR
568
A
LEU
569
n
61
LEU
569
A
PRO
570
n
62
PRO
570
A
ALA
571
n
63
ALA
571
A
GLY
572
n
64
GLY
572
A
GLU
573
n
65
GLU
573
A
SER
574
n
66
SER
574
A
PHE
575
n
67
PHE
575
A
GLU
576
n
68
GLU
576
A
TYR
577
n
69
TYR
577
A
LYS
578
n
70
LYS
578
A
PHE
579
n
71
PHE
579
A
ILE
580
n
72
ILE
580
A
ARG
581
n
73
ARG
581
A
ILE
582
n
74
ILE
582
A
GLU
583
n
75
GLU
583
A
SER
584
n
76
SER
584
A
ASP
585
n
77
ASP
585
A
ASP
586
n
78
ASP
586
A
SER
587
n
79
SER
587
A
VAL
588
n
80
VAL
588
A
GLU
589
n
81
GLU
589
A
TRP
590
n
82
TRP
590
A
GLU
591
n
83
GLU
591
A
SER
592
n
84
SER
592
A
ASP
593
n
85
ASP
593
A
PRO
594
n
86
PRO
594
A
ASN
595
n
87
ASN
595
A
ARG
596
n
88
ARG
596
A
GLU
597
n
89
GLU
597
A
TYR
598
n
90
TYR
598
A
THR
599
n
91
THR
599
A
VAL
600
n
92
VAL
600
A
PRO
601
n
93
PRO
601
A
GLN
602
n
94
GLN
602
A
ALA
603
n
95
ALA
603
A
CYS
604
n
96
CYS
604
A
GLY
605
n
97
GLY
605
A
THR
606
n
98
THR
606
A
SER
607
n
99
SER
607
A
THR
608
n
100
THR
608
A
ALA
609
n
101
ALA
609
A
THR
610
n
102
THR
610
A
VAL
611
n
103
VAL
611
A
THR
612
n
104
THR
612
A
ASP
613
n
105
ASP
613
A
THR
614
n
106
THR
614
A
TRP
615
n
107
TRP
615
A
ARG
616
n
108
ARG
616
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
609
A
O
ALA
101
A
N
THR
518
A
N
THR
10
A
O
VAL
517
A
O
VAL
9
A
N
VAL
567
A
N
VAL
59
A
O
TYR
564
A
O
TYR
56
A
N
SER
552
A
N
SER
44
A
O
ILE
549
A
O
ILE
41
A
N
LEU
533
A
N
LEU
25
A
O
VAL
534
A
O
VAL
26
A
N
LYS
578
A
N
LYS
70
A
O
ARG
581
A
O
ARG
73
A
N
GLU
589
A
N
GLU
81
A
O
ALA
609
A
O
ALA
101
A
N
THR
518
A
N
THR
10
A
O
VAL
517
A
O
VAL
9
A
N
VAL
567
A
N
VAL
59
A
O
TYR
564
A
O
TYR
56
A
N
SER
552
A
N
SER
44
A
O
ILE
549
A
O
ILE
41
A
N
LEU
533
A
N
LEU
25
A
O
VAL
534
A
O
VAL
26
A
N
LYS
578
A
N
LYS
70
A
O
PHE
575
A
O
PHE
67
A
N
TYR
598
A
N
TYR
90
1
A
A
O
HA
PHE
TYR
519
564
1.29
1
A
A
O
HZ3
LEU
TRP
551
563
1.49
1
A
A
HA
O
LEU
ASP
521
613
1.54
1
A
A
N
OH
THR
TYR
525
556
2.08
1
A
A
O
O
GLY
ASP
535
542
2.09
1
A
A
O
O
ASP
ASP
520
613
2.18
1
A
ARG
581
0.215
SIDE CHAIN
1
A
ARG
596
0.276
SIDE CHAIN
1
A
ARG
616
0.296
SIDE CHAIN
1
A
THR
510
-79.96
-151.86
1
A
THR
524
-90.27
38.59
1
A
THR
525
-46.35
162.44
1
A
GLN
539
-39.11
-39.74
1
A
LEU
540
-105.26
40.52
1
A
ASP
542
81.95
-64.49
1
A
TRP
543
-173.91
39.89
1
A
THR
557
-151.89
-67.17
1
A
SER
558
-148.19
-43.72
1
A
TYR
564
151.89
148.65
1
A
ALA
571
76.90
97.68
1
A
GLU
573
174.78
147.11
1
A
SER
574
-84.16
47.30
1
A
PHE
575
-35.18
160.09
1
A
GLU
583
-72.47
-169.49
1
A
GLU
591
-37.29
136.83
1
A
SER
592
-66.59
-135.45
1
A
ASN
595
-66.32
-165.40
1
A
GLN
602
-112.03
60.79
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
1
Y
N
A
SER
538
A
SER
30
HELX_P
A
LEU
540
A
LEU
32
5
1
3
disulf
2.021
A
CYS
509
A
SG
CYS
1
1_555
A
CYS
604
A
SG
CYS
96
1_555
HYDROLASE
HYDROLASE, STARCH BINDING DOMAIN
AMYG_ASPNG
UNP
1
1
P69328
MSFRSLLALSGLVCTGLANVISKRATLDSWLSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDS
GLVLKTLVDLFRNGDTSLLSTIENYISAQAIVQGISNPSGDLSSGAGLGEPKFNVDETAYTGSWGRPQRDGPALRATAMI
GFGQWLLDNGYTSTATDIVWPLVRNDLSYVAQYWNQTGYDLWEEVNGSSFFTIAVQHRALVEGSAFATAVGSSCSWCDSQ
APEILCYLQSFWTGSFILANFDSSRSGKDANTLLGSIHTFDPEAACDDSTFQPCSPRALANHKEVVDSFRSIYTLNDGLS
DSEAVAVGRYPEDTYYNGNPWFLCTLAAAEQLYDALYQWDKQGSLEVTDVSLDFFKALYSDAATGTYSSSSSTYSSIVDA
VKTFADGFVSIVETHAASNGSMSEQYDKSDGEQLSARDLTWSYAALLTANNRRNSVVPASWGETSASSVPGTCAATSAIG
TYSSVTVTSWPSIVATGGTTTTATPTGSGSVTSTSKTTATASKTSTSTSSTSCTTPTAVAVTFDLTATTTYGENIYLVGS
ISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSVEWESDPNREYTVPQACGTSTATVTDTWR
533
640
1KUM
509
616
P69328
A
1
1
108
7
7
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
607
A
SER
99
A
TRP
615
A
TRP
107
A
THR
513
A
THR
5
A
ALA
523
A
ALA
15
A
PRO
561
A
PRO
53
A
ALA
571
A
ALA
63
A
ILE
549
A
ILE
41
A
SER
552
A
SER
44
A
ASN
530
A
ASN
22
A
SER
536
A
SER
28
A
GLU
573
A
GLU
65
A
ILE
582
A
ILE
74
A
GLU
589
A
GLU
81
A
GLU
591
A
GLU
83
A
SER
607
A
SER
99
A
TRP
615
A
TRP
107
A
THR
513
A
THR
5
A
ALA
523
A
ALA
15
A
PRO
561
A
PRO
53
A
ALA
571
A
ALA
63
A
ILE
549
A
ILE
41
A
SER
552
A
SER
44
A
ASN
530
A
ASN
22
A
SER
536
A
SER
28
A
GLU
573
A
GLU
65
A
ILE
582
A
ILE
74
A
ARG
596
A
ARG
88
A
VAL
600
A
VAL
92
1
P 1