1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Gao, X.
Stassinopoulos, A.
Ji, J.
Kwon, Y.
Bare, S.
Goldberg, I.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C35 H36 N O12 1
662.660
SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]]
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
Y
144
N
C
Y
145
N
C
Y
146
N
C
Y
147
N
C
Y
148
N
C
Y
149
N
C
N
150
N
C
N
151
N
C
N
152
R
C
N
153
N
O
N
154
R
C
N
155
R
C
N
156
R
C
N
157
R
C
N
158
N
O
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
C
Y
171
N
C
Y
172
N
C
Y
173
N
C
Y
174
N
C
N
175
N
O
Y
176
N
C
Y
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
R
C
N
182
R
C
N
183
N
N
N
184
N
C
N
185
R
C
N
186
N
O
N
187
R
C
N
188
N
O
N
189
R
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
doub
Y
151
N
sing
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
Y
197
N
doub
Y
198
N
sing
Y
199
N
sing
Y
200
N
doub
N
201
N
sing
N
202
N
sing
Y
203
N
sing
N
204
N
sing
Y
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
41
5131
5143
10.1021/bi012112o
11955061
Induced formation of a DNA bulge structure by a molecular wedge ligand-postactivated neocarzinostatin chromophore.
2002
10.2210/pdb1kvh/pdb
pdb_00001kvh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2387.581
5'-D(*CP*CP*CP*GP*AP*TP*GP*C)-3'
1
syn
polymer
3085.029
5'-D(*GP*CP*AP*AP*TP*TP*CP*GP*GP*G)-3'
1
syn
polymer
662.660
SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]]
1
syn
non-polymer
no
no
(DC)(DC)(DC)(DG)(DA)(DT)(DG)(DC)
CCCGATGC
A
polydeoxyribonucleotide
no
no
(DG)(DC)(DA)(DA)(DT)(DT)(DC)(DG)(DG)(DG)
GCAATTCGGG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
4.829
1
19
A
1
B
18
-1.476
A_DC1:DG18_B
1
-0.424
0.733
0.038
-0.305
-28.410
1
19
A
2
B
17
-1.678
A_DC2:DG17_B
2
1.877
0.450
0.595
-0.127
-5.893
1
19
A
3
B
16
-1.669
A_DC3:DG16_B
3
-2.623
0.632
0.228
-0.265
19.792
1
19
A
4
B
15
-0.974
A_DG4:DC15_B
4
8.468
-0.639
0.371
-0.213
27.436
1
20
A
5
B
14
9.375
A_DA5:DT14_B
5
-13.468
0.081
-0.636
-0.361
-42.910
1
20
A
6
B
11
4.033
A_DT6:DA11_B
6
-10.776
0.516
0.520
-0.165
-36.705
1
19
A
7
B
10
-0.002
A_DG7:DC10_B
7
-15.975
-0.578
-0.697
-0.077
-24.298
1
19
A
8
B
9
-1.406
A_DC8:DG9_B
8
5.233
0.468
0.331
-0.140
4.906
51.910
A
A
1
2
53.702
B
B
18
17
5.178
41.255
0.630
2.192
AA_DC1DC2:DG17DG18_BB
1
-4.015
5.227
31.965
-2.966
-1.252
3.142
30.974
A
A
2
3
3.461
B
B
17
16
3.068
1.847
0.302
1.271
AA_DC2DC3:DG16DG17_BB
2
0.575
-1.077
30.915
2.042
-0.461
3.065
19.953
A
A
3
4
21.416
B
B
16
15
3.242
7.241
0.460
0.287
AA_DC3DG4:DC15DG16_BB
3
-2.001
5.917
18.498
-2.567
-2.267
3.665
37.702
A
A
4
5
27.403
B
B
15
14
3.600
16.761
-0.071
1.535
AA_DG4DA5:DT14DC15_BB
4
12.665
-20.707
31.485
-0.273
2.111
2.652
33.679
A
A
6
7
28.794
B
B
11
10
3.133
16.001
0.094
-0.236
AA_DT6DG7:DC10DA11_BB
5
4.054
-7.295
29.460
-2.877
0.463
3.440
34.205
A
A
7
8
9.617
B
B
10
9
3.299
5.603
-0.723
0.682
AA_DG7DC8:DG9DC10_BB
6
-6.102
10.472
33.216
0.234
0.222
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
2002-06-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2002-01-26
REL
NCS
SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]]
This structure was determined using 2D homonuclear and heteronuclear techniques
all calculated structures submitted
7
7
2D NOESY
2D NOESY
DQF-COSY
PE-COSY
TOCSY, H-P COSY
0.1M NACL, 10 mM SODIUM PHOSPHATE
6.4
270
K
0.1M NACL, 10 mM SODIUM PHOSPHATE
6.4
278
K
A total of 681 NMR restraints is used to derive the final refined structures.
The total restraints consist of 590 of NOE-derived distance restraints and 91 of dihedral angle restraints.
Especially, 85 of intermolecular distance restraints are derived which represent the interaction between the drug and the bulge duplex.
distance geometry (DG), restrained molecular dynamics (rMDS), and relaxation matrix refinement
ca. 1 mM NCSi-gb-bulge-DNA complex; 0.1 M NaCl, 10 mM sodium phosphate, and 0.1 mM EDTA buffer (pH 6.4); 90% H2O, 10% D2O
90% H2O/10% D2O
ca. 1 mM NCSi-gb-bulge-DNA complex; 0.1 M NaCl, 10 mM sodium phosphate, and 0.1 mM EDTA buffer (pH 6.4); 99.96% D2O
99.96% D2O
Brunger
refinement
X-PLOR
3.01
600
Bruker
AMX
PEA
21
3
NCS
NCS
21
B
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
T
6
n
6
DT
6
A
G
7
n
7
DG
7
A
C
8
n
8
DC
8
A
G
9
n
1
DG
9
B
C
10
n
2
DC
10
B
A
11
n
3
DA
11
B
A
12
n
4
DA
12
B
T
13
n
5
DT
13
B
T
14
n
6
DT
14
B
C
15
n
7
DC
15
B
G
16
n
8
DG
16
B
G
17
n
9
DG
17
B
G
18
n
10
DG
18
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
DT
14
0.072
SIDE CHAIN
2
B
DT
14
0.075
SIDE CHAIN
3
B
DT
14
0.074
SIDE CHAIN
4
B
DT
14
0.070
SIDE CHAIN
5
B
DT
14
0.074
SIDE CHAIN
6
B
DT
14
0.074
SIDE CHAIN
7
A
DA
5
0.084
SIDE CHAIN
7
B
DT
14
0.111
SIDE CHAIN
1
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
1.80
0.30
108.30
110.10
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
2.00
0.30
108.30
110.30
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
3.49
0.50
113.10
116.59
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
1
-3.06
0.40
106.40
103.34
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
1
3.21
0.50
113.80
117.01
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
1
-2.71
0.40
105.80
103.09
A
A
A
C8
N9
C4
DA
DA
DA
5
5
5
N
1
3.59
0.30
108.30
111.89
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
3.80
0.30
108.30
112.10
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
3.49
0.50
113.10
116.59
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
1
-3.13
0.40
106.40
103.27
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
1
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
2.74
0.30
108.30
111.04
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
3.61
0.50
113.10
116.71
B
B
B
N7
C8
N9
DG
DG
DG
9
9
9
N
1
-3.08
0.40
106.40
103.32
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
1
2.94
0.30
108.30
111.24
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
1
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
1
3.17
0.50
113.80
116.97
B
B
B
N7
C8
N9
DA
DA
DA
11
11
11
N
1
-2.59
0.40
105.80
103.21
B
B
B
C8
N9
C4
DA
DA
DA
11
11
11
N
1
3.34
0.30
108.30
111.64
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
N
1
3.30
0.50
113.80
117.10
B
B
B
N7
C8
N9
DA
DA
DA
12
12
12
N
1
-2.77
0.40
105.80
103.03
B
B
B
C8
N9
C4
DA
DA
DA
12
12
12
N
1
3.83
0.30
108.30
112.13
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
2.19
0.30
108.30
110.49
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
2.76
0.30
108.30
111.06
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
3.58
0.50
113.10
116.68
B
B
B
N7
C8
N9
DG
DG
DG
16
16
16
N
1
-3.09
0.40
106.40
103.31
B
B
B
C8
N9
C4
DG
DG
DG
16
16
16
N
1
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
1
3.62
0.50
113.10
116.72
B
B
B
N7
C8
N9
DG
DG
DG
17
17
17
N
1
-3.07
0.40
106.40
103.33
B
B
B
C8
N9
C4
DG
DG
DG
17
17
17
N
1
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
3.64
0.50
113.10
116.74
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
1
-3.04
0.40
106.40
103.36
B
B
B
C8
N9
C4
DG
DG
DG
18
18
18
N
2
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
2
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
2
2.60
0.30
108.30
110.90
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
2
3.63
0.50
113.10
116.73
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
2
-3.13
0.40
106.40
103.27
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
2
3.29
0.50
113.80
117.09
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
2
-2.74
0.40
105.80
103.06
A
A
A
C8
N9
C4
DA
DA
DA
5
5
5
N
2
3.82
0.30
108.30
112.12
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
2
3.67
0.30
108.30
111.97
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
2
3.55
0.50
113.10
116.65
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
2
-3.11
0.40
106.40
103.29
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
2
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
2
2.64
0.30
108.30
110.94
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
2
3.68
0.50
113.10
116.78
B
B
B
N7
C8
N9
DG
DG
DG
9
9
9
N
2
-3.12
0.40
106.40
103.28
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
2
3.06
0.30
108.30
111.36
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
2
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
2
3.03
0.50
113.80
116.83
B
B
B
N7
C8
N9
DA
DA
DA
11
11
11
N
2
-2.56
0.40
105.80
103.24
B
B
B
C8
N9
C4
DA
DA
DA
11
11
11
N
2
3.23
0.30
108.30
111.53
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
N
2
3.25
0.50
113.80
117.05
B
B
B
N7
C8
N9
DA
DA
DA
12
12
12
N
2
-2.76
0.40
105.80
103.04
B
B
B
C8
N9
C4
DA
DA
DA
12
12
12
N
2
3.55
0.30
108.30
111.85
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
2
-3.79
0.60
122.90
119.11
B
B
B
C6
C5
C7
DT
DT
DT
13
13
13
N
2
2.10
0.30
108.30
110.40
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
2
2.69
0.30
108.30
110.99
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
2
3.56
0.50
113.10
116.66
B
B
B
N7
C8
N9
DG
DG
DG
16
16
16
N
2
-3.04
0.40
106.40
103.36
B
B
B
C8
N9
C4
DG
DG
DG
16
16
16
N
2
1.83
0.30
108.30
110.13
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
2
3.59
0.50
113.10
116.69
B
B
B
N7
C8
N9
DG
DG
DG
17
17
17
N
2
-3.06
0.40
106.40
103.34
B
B
B
C8
N9
C4
DG
DG
DG
17
17
17
N
2
2.08
0.30
108.30
110.38
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
2
3.57
0.50
113.10
116.67
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
2
-3.10
0.40
106.40
103.30
B
B
B
C8
N9
C4
DG
DG
DG
18
18
18
N
3
3.13
0.30
108.30
111.43
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
3
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
3
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
3
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
3
3.50
0.50
113.10
116.60
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
3
-3.02
0.40
106.40
103.38
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
3
3.27
0.50
113.80
117.07
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
3
-2.69
0.40
105.80
103.11
A
A
A
C8
N9
C4
DA
DA
DA
5
5
5
N
3
3.59
0.30
108.30
111.89
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
3
3.60
0.30
108.30
111.90
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
3
3.57
0.50
113.10
116.67
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
3
-3.10
0.40
106.40
103.30
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
3
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
3
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
3
3.62
0.50
113.10
116.72
B
B
B
N7
C8
N9
DG
DG
DG
9
9
9
N
3
-3.07
0.40
106.40
103.33
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
3
2.81
0.30
108.30
111.11
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
3
2.60
0.30
108.30
110.90
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
3
3.04
0.50
113.80
116.84
B
B
B
N7
C8
N9
DA
DA
DA
11
11
11
N
3
-2.54
0.40
105.80
103.26
B
B
B
C8
N9
C4
DA
DA
DA
11
11
11
N
3
3.50
0.30
108.30
111.80
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
N
3
3.29
0.50
113.80
117.09
B
B
B
N7
C8
N9
DA
DA
DA
12
12
12
N
3
-2.78
0.40
105.80
103.02
B
B
B
C8
N9
C4
DA
DA
DA
12
12
12
N
3
3.77
0.30
108.30
112.07
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
3
-3.80
0.60
122.90
119.10
B
B
B
C6
C5
C7
DT
DT
DT
13
13
13
N
3
-3.60
0.60
122.90
119.30
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
3
2.39
0.30
108.30
110.69
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
3
2.86
0.30
108.30
111.16
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
3
3.67
0.50
113.10
116.77
B
B
B
N7
C8
N9
DG
DG
DG
16
16
16
N
3
-3.08
0.40
106.40
103.32
B
B
B
C8
N9
C4
DG
DG
DG
16
16
16
N
3
1.92
0.30
108.30
110.22
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
3
3.56
0.50
113.10
116.66
B
B
B
N7
C8
N9
DG
DG
DG
17
17
17
N
3
-3.04
0.40
106.40
103.36
B
B
B
C8
N9
C4
DG
DG
DG
17
17
17
N
3
1.89
0.30
108.30
110.19
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
3
3.62
0.50
113.10
116.72
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
3
-3.07
0.40
106.40
103.33
B
B
B
C8
N9
C4
DG
DG
DG
18
18
18
N
4
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
2.00
0.30
108.30
110.30
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
4
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
4
3.59
0.50
113.10
116.69
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
4
-3.01
0.40
106.40
103.39
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
4
3.30
0.50
113.80
117.10
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
4
-2.78
0.40
105.80
103.02
A
A
A
C8
N9
C4
DA
DA
DA
5
5
5
N
4
3.28
0.30
108.30
111.58
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
4
4.00
0.30
108.30
112.30
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
4
3.54
0.50
113.10
116.64
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
4
-3.14
0.40
106.40
103.26
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
4
2.30
0.30
108.30
110.60
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
4
2.84
0.30
108.30
111.14
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
4
3.67
0.50
113.10
116.77
B
B
B
N7
C8
N9
DG
DG
DG
9
9
9
N
4
-3.12
0.40
106.40
103.28
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
4
2.76
0.30
108.30
111.06
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
4
2.34
0.30
108.30
110.64
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
4
3.11
0.50
113.80
116.91
B
B
B
N7
C8
N9
DA
DA
DA
11
11
11
N
4
-2.60
0.40
105.80
103.20
B
B
B
C8
N9
C4
DA
DA
DA
11
11
11
N
4
3.21
0.30
108.30
111.51
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
N
4
3.32
0.50
113.80
117.12
B
B
B
N7
C8
N9
DA
DA
DA
12
12
12
N
4
-2.72
0.40
105.80
103.08
B
B
B
C8
N9
C4
DA
DA
DA
12
12
12
N
4
3.91
0.30
108.30
112.21
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
4
-3.68
0.60
122.90
119.22
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
4
2.15
0.30
108.30
110.45
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
4
2.85
0.30
108.30
111.15
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
4
3.54
0.50
113.10
116.64
B
B
B
N7
C8
N9
DG
DG
DG
16
16
16
N
4
-3.04
0.40
106.40
103.36
B
B
B
C8
N9
C4
DG
DG
DG
16
16
16
N
4
2.15
0.30
108.30
110.45
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
4
3.57
0.50
113.10
116.67
B
B
B
N7
C8
N9
DG
DG
DG
17
17
17
N
4
-3.05
0.40
106.40
103.35
B
B
B
C8
N9
C4
DG
DG
DG
17
17
17
N
4
1.98
0.30
108.30
110.28
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
4
3.63
0.50
113.10
116.73
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
4
-3.09
0.40
106.40
103.31
B
B
B
C8
N9
C4
DG
DG
DG
18
18
18
N
5
3.07
0.30
108.30
111.37
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
5
1.83
0.30
108.30
110.13
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
5
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
5
2.65
0.30
108.30
110.95
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
5
3.56
0.50
113.10
116.66
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
5
-3.07
0.40
106.40
103.33
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
5
3.25
0.50
113.80
117.05
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
5
-2.73
0.40
105.80
103.07
A
A
A
C8
N9
C4
DA
DA
DA
5
5
5
N
5
3.63
0.30
108.30
111.93
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
5
3.62
0.30
108.30
111.92
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
5
3.53
0.50
113.10
116.63
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
5
-3.15
0.40
106.40
103.25
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
5
2.29
0.30
108.30
110.59
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
5
2.78
0.30
108.30
111.08
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
5
3.66
0.50
113.10
116.76
B
B
B
N7
C8
N9
DG
DG
DG
9
9
9
N
5
-3.11
0.40
106.40
103.29
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
5
2.92
0.30
108.30
111.22
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
5
2.69
0.30
108.30
110.99
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
5
3.10
0.50
113.80
116.90
B
B
B
N7
C8
N9
DA
DA
DA
11
11
11
N
5
-2.62
0.40
105.80
103.18
B
B
B
C8
N9
C4
DA
DA
DA
11
11
11
N
5
3.40
0.30
108.30
111.70
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
N
5
3.34
0.50
113.80
117.14
B
B
B
N7
C8
N9
DA
DA
DA
12
12
12
N
5
-2.79
0.40
105.80
103.01
B
B
B
C8
N9
C4
DA
DA
DA
12
12
12
N
5
3.73
0.30
108.30
112.03
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
5
2.02
0.30
108.30
110.32
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
5
2.89
0.30
108.30
111.19
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
5
3.66
0.50
113.10
116.76
B
B
B
N7
C8
N9
DG
DG
DG
16
16
16
N
5
-3.08
0.40
106.40
103.32
B
B
B
C8
N9
C4
DG
DG
DG
16
16
16
N
5
1.96
0.30
108.30
110.26
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
5
3.61
0.50
113.10
116.71
B
B
B
N7
C8
N9
DG
DG
DG
17
17
17
N
5
-3.01
0.40
106.40
103.39
B
B
B
C8
N9
C4
DG
DG
DG
17
17
17
N
5
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
5
3.60
0.50
113.10
116.70
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
5
-3.03
0.40
106.40
103.37
B
B
B
C8
N9
C4
DG
DG
DG
18
18
18
N
6
3.05
0.30
108.30
111.35
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
1.83
0.30
108.30
110.13
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
6
2.00
0.30
108.30
110.30
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
6
2.59
0.30
108.30
110.89
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
6
3.56
0.50
113.10
116.66
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
6
-3.09
0.40
106.40
103.31
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
6
3.30
0.50
113.80
117.10
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
6
-2.71
0.40
105.80
103.09
A
A
A
C8
N9
C4
DA
DA
DA
5
5
5
N
6
3.67
0.30
108.30
111.97
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
6
3.69
0.30
108.30
111.99
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
6
3.55
0.50
113.10
116.65
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
6
-3.14
0.40
106.40
103.26
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
6
2.16
0.30
108.30
110.46
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
6
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
6
3.66
0.50
113.10
116.76
B
B
B
N7
C8
N9
DG
DG
DG
9
9
9
N
6
-3.14
0.40
106.40
103.26
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
6
2.93
0.30
108.30
111.23
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
6
2.49
0.30
108.30
110.79
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
6
3.05
0.50
113.80
116.85
B
B
B
N7
C8
N9
DA
DA
DA
11
11
11
N
6
-2.57
0.40
105.80
103.23
B
B
B
C8
N9
C4
DA
DA
DA
11
11
11
N
6
3.44
0.30
108.30
111.74
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
N
6
3.31
0.50
113.80
117.11
B
B
B
N7
C8
N9
DA
DA
DA
12
12
12
N
6
-2.76
0.40
105.80
103.04
B
B
B
C8
N9
C4
DA
DA
DA
12
12
12
N
6
3.67
0.30
108.30
111.97
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
6
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
6
2.83
0.30
108.30
111.13
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
6
3.63
0.50
113.10
116.73
B
B
B
N7
C8
N9
DG
DG
DG
16
16
16
N
6
-3.05
0.40
106.40
103.35
B
B
B
C8
N9
C4
DG
DG
DG
16
16
16
N
6
2.02
0.30
108.30
110.32
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
6
3.56
0.50
113.10
116.66
B
B
B
N7
C8
N9
DG
DG
DG
17
17
17
N
6
-3.05
0.40
106.40
103.35
B
B
B
C8
N9
C4
DG
DG
DG
17
17
17
N
6
1.94
0.30
108.30
110.24
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
6
3.56
0.50
113.10
116.66
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
6
-3.03
0.40
106.40
103.37
B
B
B
C8
N9
C4
DG
DG
DG
18
18
18
N
7
3.19
0.30
108.30
111.49
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
7
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
7
2.89
0.30
108.30
111.19
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
7
3.55
0.50
113.10
116.65
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
7
-2.98
0.40
106.40
103.42
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
7
3.37
0.50
113.80
117.17
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
7
-3.26
0.40
105.80
102.54
A
A
A
C8
N9
C4
DA
DA
DA
5
5
5
N
7
-4.43
0.60
118.60
114.17
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
7
3.66
0.30
108.30
111.96
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
7
3.78
0.30
108.30
112.08
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
7
3.49
0.50
113.10
116.59
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
7
-3.05
0.40
106.40
103.35
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
7
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
7
2.65
0.30
108.30
110.95
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
7
3.61
0.50
113.10
116.71
B
B
B
N7
C8
N9
DG
DG
DG
9
9
9
N
7
-3.09
0.40
106.40
103.31
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
7
2.95
0.30
108.30
111.25
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
7
2.44
0.30
108.30
110.74
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
7
3.02
0.50
113.80
116.82
B
B
B
N7
C8
N9
DA
DA
DA
11
11
11
N
7
-2.56
0.40
105.80
103.24
B
B
B
C8
N9
C4
DA
DA
DA
11
11
11
N
7
2.85
0.30
108.30
111.15
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
N
7
3.47
0.50
113.80
117.27
B
B
B
N7
C8
N9
DA
DA
DA
12
12
12
N
7
-2.82
0.40
105.80
102.98
B
B
B
C8
N9
C4
DA
DA
DA
12
12
12
N
7
4.38
0.30
108.30
112.68
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
7
-3.82
0.60
122.90
119.08
B
B
B
C6
C5
C7
DT
DT
DT
13
13
13
N
7
8.43
1.20
119.70
128.13
B
B
B
C3'
O3'
P
DT
DT
DT
13
13
14
Y
7
3.66
0.60
118.00
121.66
B
B
B
C4
C5
C6
DT
DT
DT
14
14
14
N
7
-4.05
0.60
122.90
118.85
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
7
2.76
0.30
108.30
111.06
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
7
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
7
3.57
0.50
113.10
116.67
B
B
B
N7
C8
N9
DG
DG
DG
16
16
16
N
7
-3.06
0.40
106.40
103.34
B
B
B
C8
N9
C4
DG
DG
DG
16
16
16
N
7
2.14
0.30
108.30
110.44
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
7
3.60
0.50
113.10
116.70
B
B
B
N7
C8
N9
DG
DG
DG
17
17
17
N
7
-3.07
0.40
106.40
103.33
B
B
B
C8
N9
C4
DG
DG
DG
17
17
17
N
7
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
7
3.55
0.50
113.10
116.65
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
7
-3.06
0.40
106.40
103.34
B
B
B
C8
N9
C4
DG
DG
DG
18
18
18
N
NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore
1
N
N
2
N
N
3
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
18
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
18
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
18
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
17
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
17
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
17
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
16
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
16
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
16
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
15
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
15
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
15
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
14
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
14
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
11
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
11
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
DC
10
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
DC
10
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
DC
10
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
9
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
9
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
9
B
N2
DG
1
1_555
DNA
DNA
1KVH
PDB
1
1KVH
1KVH
PDB
2
1KVH
1
8
1KVH
1
8
1KVH
A
1
1
8
9
18
1KVH
9
18
1KVH
B
2
1
10
BINDING SITE FOR RESIDUE NCS B 21
B
NCS
21
Software
8
A
DC
3
A
DC
3
8
1_555
A
DG
4
A
DG
4
8
1_555
A
DA
5
A
DA
5
8
1_555
A
DT
6
A
DT
6
8
1_555
B
DA
11
B
DA
3
8
1_555
B
DA
12
B
DA
4
8
1_555
B
DT
13
B
DT
5
8
1_555
B
DT
14
B
DT
6
8
1_555