1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Pakhomova, O.N. Deep, S. Huang, Q. Zwieb, C. Hinck, A.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 317 145 158 10.1006/jmbi.2002.5411 11916385 Solution structure of protein SRP19 of Archaeoglobus fulgidus signal recognition particle. 2002 10.2210/pdb1kvn/pdb pdb_00001kvn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 12406.707 SRP19 C4S/C41S 1 man polymer SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN no no MKESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWEEGGRVVVEKRGTKTKLMIE LARKIAEIREQKREQKKDKKKKKK MKESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWEEGGRVVVEKRGTKTKLMIE LARKIAEIREQKREQKKDKKKKKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Archaeoglobus Escherichia Escherichia coli sample AF1258 2234 Archaeoglobus fulgidus 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET-23c(+) database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-03-20 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details Deposition 4935 contains assignments for protein SRP19 of Archaeoglobus fulgidus. 1KVV contains the coordinates for the minimized average structure for the same protein. RCSB Y RCSB 2002-01-27 REL IPAP-HSQC experiment was performed in a sample of the protein in either an unstressed or mechanically stressed 8% polyacrylamide gel. structures with the lowest energy 26 10 3D_15N-separated_NOESY 3D_13C-separated_NOESY 4D_13C-separated_NOESY 3D 15N-separated NOESY with 13C chemical shift evolution in F2 dimention IPAP-HSQC 75 mM 6.0 ambient 300 K 75 mM 6.0 ambient 310 K The structures are based on a total of 886 restraints, 690 are NOE-derived distance constraints, 130 dihedral angle restraints, 66 1H-15N residual dipolar coupling restraints. Distance geometry/simulated annealing protocol 25 mM KH2PO4, 50mM NaCl, 95% H2O, 5% D2O 95% H2O/5% D2O 25 mM KH2PO4, 50 mM NaCl, 99.99% D2O 99.99% D2O Bruker Analytik GmbH collection XwinNMR 2.5 Delaglio, F., Grzesiek, S., Vuister, G., Zhu, W., Pfeifer, J., Bax, A. processing NMRPipe 1.8 Garrett, D.C., Powers, R., Gronenborn, A.M., Clore, G.M. data analysis PIPP 4.3.1 Brunger, A.T.; Clore, G.M., Gronenborn, A.M., Tjundra, N. structure solution X-PLOR 3.851 Cornilescu, G., Delaglio, F., Bax, A. data analysis TALOS 98.040.28.02 Zweckstetter, M., Bax, A. data analysis PALES 2.1 Brunger, A.T.; Clore, G.M., Gronenborn, A.M., Tjundra, N. refinement X-PLOR 3.851 500 Bruker AMX2 MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A GLU 3 n 3 GLU 3 A SER 4 n 4 SER 4 A VAL 5 n 5 VAL 5 A VAL 6 n 6 VAL 6 A TRP 7 n 7 TRP 7 A THR 8 n 8 THR 8 A VAL 9 n 9 VAL 9 A ASN 10 n 10 ASN 10 A LEU 11 n 11 LEU 11 A ASP 12 n 12 ASP 12 A SER 13 n 13 SER 13 A LYS 14 n 14 LYS 14 A LYS 15 n 15 LYS 15 A SER 16 n 16 SER 16 A ARG 17 n 17 ARG 17 A ALA 18 n 18 ALA 18 A GLU 19 n 19 GLU 19 A GLY 20 n 20 GLY 20 A ARG 21 n 21 ARG 21 A ARG 22 n 22 ARG 22 A ILE 23 n 23 ILE 23 A PRO 24 n 24 PRO 24 A ARG 25 n 25 ARG 25 A ARG 26 n 26 ARG 26 A PHE 27 n 27 PHE 27 A ALA 28 n 28 ALA 28 A VAL 29 n 29 VAL 29 A PRO 30 n 30 PRO 30 A ASN 31 n 31 ASN 31 A VAL 32 n 32 VAL 32 A LYS 33 n 33 LYS 33 A LEU 34 n 34 LEU 34 A HIS 35 n 35 HIS 35 A GLU 36 n 36 GLU 36 A LEU 37 n 37 LEU 37 A VAL 38 n 38 VAL 38 A GLU 39 n 39 GLU 39 A ALA 40 n 40 ALA 40 A SER 41 n 41 SER 41 A LYS 42 n 42 LYS 42 A GLU 43 n 43 GLU 43 A LEU 44 n 44 LEU 44 A GLY 45 n 45 GLY 45 A LEU 46 n 46 LEU 46 A LYS 47 n 47 LYS 47 A PHE 48 n 48 PHE 48 A ARG 49 n 49 ARG 49 A ALA 50 n 50 ALA 50 A GLU 51 n 51 GLU 51 A GLU 52 n 52 GLU 52 A LYS 53 n 53 LYS 53 A LYS 54 n 54 LYS 54 A TYR 55 n 55 TYR 55 A PRO 56 n 56 PRO 56 A LYS 57 n 57 LYS 57 A SER 58 n 58 SER 58 A TRP 59 n 59 TRP 59 A TRP 60 n 60 TRP 60 A GLU 61 n 61 GLU 61 A GLU 62 n 62 GLU 62 A GLY 63 n 63 GLY 63 A GLY 64 n 64 GLY 64 A ARG 65 n 65 ARG 65 A VAL 66 n 66 VAL 66 A VAL 67 n 67 VAL 67 A VAL 68 n 68 VAL 68 A GLU 69 n 69 GLU 69 A LYS 70 n 70 LYS 70 A ARG 71 n 71 ARG 71 A GLY 72 n 72 GLY 72 A THR 73 n 73 THR 73 A LYS 74 n 74 LYS 74 A THR 75 n 75 THR 75 A LYS 76 n 76 LYS 76 A LEU 77 n 77 LEU 77 A MET 78 n 78 MET 78 A ILE 79 n 79 ILE 79 A GLU 80 n 80 GLU 80 A LEU 81 n 81 LEU 81 A ALA 82 n 82 ALA 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A ILE 85 n 85 ILE 85 A ALA 86 n 86 ALA 86 A GLU 87 n 87 GLU 87 A ILE 88 n 88 ILE 88 A ARG 89 n 89 ARG 89 A GLU 90 n 90 GLU 90 A GLN 91 n 91 GLN 91 A LYS 92 n 92 LYS 92 A ARG 93 n 93 ARG 93 A GLU 94 n 94 GLU 94 A GLN 95 n 95 GLN 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A ASP 98 n 98 ASP 98 A LYS 99 n 99 LYS 99 A LYS 100 n 100 LYS 100 A LYS 101 n 101 LYS 101 A LYS 102 n 102 LYS 102 A LYS 103 n 103 LYS 103 A LYS 104 n 104 LYS 104 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 6 A N VAL 6 A O VAL 66 A O VAL 66 A O VAL 67 A O VAL 67 A N ARG 49 A N ARG 49 1 A A O H LYS GLU 47 69 1.59 2 A A H O GLU ARG 51 65 1.55 2 A A O H ARG VAL 49 67 1.56 2 A A O H THR ILE 75 79 1.58 2 A A O H ALA ALA 82 86 1.59 2 A A H O ARG VAL 49 67 1.59 3 A A O H ARG VAL 49 67 1.56 4 A A O H LEU LEU 77 81 1.55 4 A A O H ARG ARG 89 93 1.55 4 A A O H ARG VAL 49 67 1.57 4 A A O H ALA ALA 82 86 1.58 5 A A HG1 O THR GLY 8 64 1.56 5 A A O H ARG VAL 49 67 1.57 5 A A O H THR ILE 75 79 1.58 6 A A O H ALA ALA 82 86 1.53 7 A A H O GLU ARG 51 65 1.55 7 A A O H THR ILE 75 79 1.56 8 A A OD2 HZ2 ASP LYS 12 15 1.52 8 A A O H ARG VAL 49 67 1.56 8 A A O H LEU LEU 77 81 1.57 9 A A O H LYS GLU 47 69 1.56 9 A A O H THR ILE 75 79 1.58 9 A A O H ARG VAL 49 67 1.59 9 A A O H ALA ALA 82 86 1.59 10 A A H O GLU ARG 51 65 1.55 10 A A O H ARG VAL 49 67 1.55 1 A ARG 17 0.312 SIDE CHAIN 1 A ARG 21 0.302 SIDE CHAIN 1 A ARG 22 0.263 SIDE CHAIN 1 A ARG 25 0.245 SIDE CHAIN 1 A ARG 26 0.285 SIDE CHAIN 1 A ARG 49 0.218 SIDE CHAIN 1 A ARG 65 0.298 SIDE CHAIN 1 A ARG 71 0.307 SIDE CHAIN 1 A ARG 83 0.264 SIDE CHAIN 1 A ARG 89 0.317 SIDE CHAIN 1 A ARG 93 0.298 SIDE CHAIN 2 A ARG 17 0.249 SIDE CHAIN 2 A ARG 21 0.290 SIDE CHAIN 2 A ARG 22 0.253 SIDE CHAIN 2 A ARG 25 0.208 SIDE CHAIN 2 A ARG 26 0.202 SIDE CHAIN 2 A ARG 49 0.317 SIDE CHAIN 2 A ARG 65 0.265 SIDE CHAIN 2 A ARG 71 0.305 SIDE CHAIN 2 A ARG 83 0.306 SIDE CHAIN 2 A ARG 89 0.274 SIDE CHAIN 2 A ARG 93 0.317 SIDE CHAIN 3 A ARG 17 0.300 SIDE CHAIN 3 A ARG 21 0.307 SIDE CHAIN 3 A ARG 22 0.307 SIDE CHAIN 3 A ARG 25 0.242 SIDE CHAIN 3 A ARG 26 0.235 SIDE CHAIN 3 A ARG 49 0.262 SIDE CHAIN 3 A ARG 65 0.314 SIDE CHAIN 3 A ARG 71 0.230 SIDE CHAIN 3 A ARG 83 0.225 SIDE CHAIN 3 A ARG 89 0.209 SIDE CHAIN 3 A ARG 93 0.205 SIDE CHAIN 4 A ARG 17 0.165 SIDE CHAIN 4 A ARG 21 0.171 SIDE CHAIN 4 A ARG 22 0.280 SIDE CHAIN 4 A ARG 25 0.238 SIDE CHAIN 4 A ARG 26 0.259 SIDE CHAIN 4 A ARG 49 0.265 SIDE CHAIN 4 A ARG 65 0.199 SIDE CHAIN 4 A ARG 71 0.217 SIDE CHAIN 4 A ARG 83 0.301 SIDE CHAIN 4 A ARG 89 0.313 SIDE CHAIN 4 A ARG 93 0.310 SIDE CHAIN 5 A ARG 17 0.159 SIDE CHAIN 5 A ARG 21 0.303 SIDE CHAIN 5 A ARG 22 0.289 SIDE CHAIN 5 A ARG 25 0.284 SIDE CHAIN 5 A ARG 26 0.313 SIDE CHAIN 5 A ARG 49 0.291 SIDE CHAIN 5 A ARG 65 0.295 SIDE CHAIN 5 A ARG 71 0.184 SIDE CHAIN 5 A ARG 83 0.228 SIDE CHAIN 5 A ARG 89 0.290 SIDE CHAIN 5 A ARG 93 0.288 SIDE CHAIN 6 A ARG 17 0.304 SIDE CHAIN 6 A ARG 21 0.195 SIDE CHAIN 6 A ARG 22 0.292 SIDE CHAIN 6 A ARG 25 0.316 SIDE CHAIN 6 A ARG 26 0.145 SIDE CHAIN 6 A ARG 49 0.245 SIDE CHAIN 6 A ARG 65 0.269 SIDE CHAIN 6 A ARG 71 0.186 SIDE CHAIN 6 A ARG 83 0.241 SIDE CHAIN 6 A ARG 89 0.282 SIDE CHAIN 6 A ARG 93 0.309 SIDE CHAIN 7 A ARG 17 0.289 SIDE CHAIN 7 A ARG 21 0.316 SIDE CHAIN 7 A ARG 22 0.201 SIDE CHAIN 7 A ARG 25 0.317 SIDE CHAIN 7 A ARG 26 0.204 SIDE CHAIN 7 A ARG 49 0.312 SIDE CHAIN 7 A ARG 65 0.306 SIDE CHAIN 7 A ARG 71 0.295 SIDE CHAIN 7 A ARG 83 0.233 SIDE CHAIN 7 A ARG 89 0.196 SIDE CHAIN 8 A ARG 17 0.242 SIDE CHAIN 8 A ARG 21 0.295 SIDE CHAIN 8 A ARG 22 0.174 SIDE CHAIN 8 A ARG 25 0.317 SIDE CHAIN 8 A ARG 26 0.249 SIDE CHAIN 8 A ARG 49 0.211 SIDE CHAIN 8 A ARG 65 0.309 SIDE CHAIN 8 A ARG 71 0.317 SIDE CHAIN 8 A ARG 83 0.255 SIDE CHAIN 8 A ARG 93 0.207 SIDE CHAIN 9 A ARG 17 0.315 SIDE CHAIN 9 A ARG 21 0.213 SIDE CHAIN 9 A ARG 22 0.275 SIDE CHAIN 9 A ARG 25 0.318 SIDE CHAIN 9 A ARG 26 0.296 SIDE CHAIN 9 A ARG 49 0.274 SIDE CHAIN 9 A ARG 65 0.307 SIDE CHAIN 9 A ARG 71 0.257 SIDE CHAIN 9 A ARG 83 0.301 SIDE CHAIN 9 A ARG 89 0.266 SIDE CHAIN 9 A ARG 93 0.313 SIDE CHAIN 10 A ARG 17 0.210 SIDE CHAIN 10 A ARG 21 0.278 SIDE CHAIN 10 A ARG 22 0.307 SIDE CHAIN 10 A ARG 25 0.254 SIDE CHAIN 10 A ARG 26 0.315 SIDE CHAIN 10 A ARG 49 0.189 SIDE CHAIN 10 A ARG 65 0.276 SIDE CHAIN 10 A ARG 71 0.192 SIDE CHAIN 10 A ARG 83 0.199 SIDE CHAIN 10 A ARG 89 0.311 SIDE CHAIN 10 A ARG 93 0.251 SIDE CHAIN 1 A LEU 11 -96.23 35.64 1 A ARG 22 -155.28 29.12 1 A ASN 31 61.58 69.14 1 A LEU 46 -177.13 113.27 1 A LYS 47 172.49 -39.74 1 A LYS 57 38.53 -167.31 1 A SER 58 42.52 -163.93 1 A LYS 70 157.36 -69.09 1 A ARG 71 59.04 128.45 1 A LYS 74 -125.67 -113.06 1 A LYS 101 -117.13 -76.07 2 A LYS 2 -124.39 -154.29 2 A ARG 21 45.38 97.68 2 A ASN 31 61.76 128.94 2 A LEU 46 -175.85 126.96 2 A LYS 47 -178.00 -43.59 2 A LYS 53 49.57 96.61 2 A LYS 54 -90.81 -130.83 2 A LYS 70 176.02 56.56 2 A LYS 74 -112.21 -134.15 2 A GLN 95 20.23 80.31 2 A LYS 96 -89.91 -74.91 2 A LYS 99 48.14 92.19 2 A LYS 101 -154.27 -44.59 3 A LYS 2 -155.61 -96.04 3 A ARG 22 -159.82 36.94 3 A LEU 46 -176.36 128.15 3 A LYS 47 -173.96 -50.99 3 A LYS 54 53.71 168.94 3 A LYS 70 170.03 60.00 3 A LYS 74 -123.61 -101.16 3 A GLN 95 44.04 74.00 3 A LYS 97 53.77 -87.29 3 A LYS 100 -148.84 -62.90 3 A LYS 101 64.45 -63.61 4 A LYS 2 -145.95 -114.00 4 A LEU 11 -93.36 39.09 4 A ARG 22 -160.65 34.12 4 A ASN 31 67.85 117.70 4 A LEU 46 -175.91 124.93 4 A LYS 47 -176.00 -44.74 4 A LYS 54 44.77 93.11 4 A TYR 55 62.26 135.23 4 A TRP 60 -167.80 77.82 4 A LYS 70 -163.27 -44.73 4 A ARG 71 47.25 -160.09 4 A LYS 74 -98.30 -72.79 4 A GLN 95 58.83 175.27 4 A LYS 96 -171.19 -77.85 5 A LYS 2 -160.68 -92.86 5 A LEU 46 -176.94 118.81 5 A LYS 47 -176.88 -45.52 5 A LYS 53 -134.11 -140.38 5 A LYS 54 57.79 105.16 5 A SER 58 40.96 89.37 5 A TRP 59 -55.73 -88.73 5 A LYS 70 -178.13 58.20 5 A LYS 74 -127.33 -106.33 5 A LYS 100 -61.87 -166.90 5 A LYS 101 51.78 -161.76 6 A LEU 11 -93.43 32.88 6 A ASN 31 65.53 133.28 6 A LEU 46 -176.71 112.91 6 A LYS 47 170.84 -39.43 6 A LYS 54 58.40 95.27 6 A TRP 60 43.91 -161.94 6 A LYS 70 -157.60 -43.06 6 A ARG 71 42.20 -152.97 6 A LYS 74 -103.72 -92.28 6 A LYS 96 -88.39 -74.05 6 A ASP 98 47.53 27.55 6 A LYS 99 33.19 83.73 7 A ARG 22 -156.67 35.30 7 A LEU 46 -177.20 -144.30 7 A LYS 47 65.84 -47.54 7 A TYR 55 -55.65 109.81 7 A LYS 57 53.85 83.06 7 A TRP 60 67.46 -68.38 7 A LYS 70 106.71 97.83 7 A LYS 74 -97.48 -71.27 7 A GLN 95 173.78 100.94 7 A LYS 96 -175.28 125.98 7 A LYS 97 53.93 -84.59 8 A LYS 2 -101.30 -139.37 8 A LEU 11 -97.92 34.05 8 A ASN 31 61.82 61.77 8 A LEU 46 -176.63 122.79 8 A LYS 47 -174.64 -44.35 8 A LYS 53 -91.32 -68.59 8 A SER 58 63.40 -70.15 8 A LYS 70 -158.67 -52.44 8 A ARG 71 56.37 156.87 8 A LYS 74 -127.52 -77.95 8 A GLN 95 -177.37 149.73 8 A LYS 96 -172.38 80.53 8 A LYS 97 48.88 25.42 8 A ASP 98 -147.60 -55.30 9 A ASN 31 66.08 125.15 9 A LEU 46 -177.76 117.21 9 A LYS 47 -175.85 -41.81 9 A LYS 53 58.58 136.95 9 A PRO 56 -73.06 -160.23 9 A TRP 60 -176.08 31.33 9 A LYS 70 178.09 -34.46 9 A GLN 95 -52.99 103.81 10 A LYS 2 -150.47 -120.19 10 A ASN 31 62.73 63.01 10 A LEU 46 179.65 -140.14 10 A LYS 47 78.08 -51.95 10 A LYS 54 71.74 -7.06 10 A TYR 55 47.51 72.69 10 A SER 58 48.22 24.72 10 A TRP 60 51.35 -178.76 10 A LYS 70 -159.49 -44.90 10 A ARG 71 40.49 96.56 10 A LYS 74 -97.44 -77.61 10 A LYS 96 -85.75 -73.80 10 A LYS 99 30.78 57.32 10 A LYS 101 55.69 -148.27 Solution Structure Of Protein SRP19 Of The Arhaeoglobus fulgidus Signal Recognition Particle, 10 Structures 1 N N A PRO 24 A PRO 24 HELX_P A ALA 28 A ALA 28 5 1 5 A LYS 33 A LYS 33 HELX_P A GLY 45 A GLY 45 1 2 13 A LYS 74 A LYS 74 HELX_P A GLN 95 A GLN 95 1 3 22 A LYS 96 A LYS 96 HELX_P A LYS 101 A LYS 101 1 4 6 RNA BINDING PROTEIN RNA binding protein SRP19_ARCFU UNP 1 1 O29010 MKECVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEACKELGLKFRAEEKKYPKSWWEEGGRVVVEKRGTKTKLMIE LARKIAEIREQKREQKKDKKKKKK 1 104 1KVN 1 104 O29010 A 1 1 104 1 CYS engineered mutation SER 4 1KVN A O29010 UNP 4 4 1 CYS engineered mutation SER 41 1KVN A O29010 UNP 41 41 3 anti-parallel anti-parallel A SER 4 A SER 4 A TRP 7 A TRP 7 A ARG 65 A ARG 65 A VAL 68 A VAL 68 A PHE 48 A PHE 48 A ALA 50 A ALA 50