1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1999-02-23
initial release
McKenna, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
UK
Structure
STRUE6
2005
0969-2126
6
135
145
10.1016/S0969-2126(98)00016-1
9519405
Structural analysis of the Spiroplasma virus, SpV4: implications for evolutionary variation to obtain host diversity among the Microviridae.
1998
UK
Nature
NATUAS
0006
0028-0836
355
137
Atomic Structure of Single-Stranded DNA Bacteriophage Phi X174 and its Functional Implications
1992
IS
Isr.J.Med.Sci.
IJMDAI
2165
0021-2180
20
797
Characterization of Spiroplasma Virus Group 4 (Sv4)
1984
10.2210/pdb1kvp/pdb
pdb_00001kvp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
DETAILS--THE CRYSTAL STRUCTURE OF HRV16 WAS PLACED INTO THE CALIBRATED CRYO-EM
DENSITY MAP BY ALIGNING THE ICOSAHEDRAL SYMMETRY AXES. APPROPRIATELY
GLYCOSYLATED MODELS OF D1D2-ICAM-1 WITH VARIOUS INTERDOMAIN ANGLES (AS SEEN IN
DIFFERENT CRYSTAL STRUCTURES OF D1D2-ICAM-1), WERE FIRST MANUALLY FITTED INTO
THE CRYO-EM DENSITY CORRESPONDING TO THE ICAM-1 FRAGMENT, AND SUBSEQUENTLY
REFINED AS RIGID BODIES IN RECIPROCAL SPACE. OBSERVED STRUCTURE FACTORS WERE
OBTAINED BY INVERSE FOURIER TRANSFORM OF CRYO-EM DIFFERENCE MAPS CALCULATED BY-
1) SUBSTRACTION OF THE HRV16 AND RNA CONTRIBUTION FROM THE CRYO-EM
RECONSTRUCTED DENSITY OF THE COMPLEXES; 2) REDUCTION OF THE DIFFERENCE MAPS TO
AN ICOSAHEDRAL ASYMMETRIC UNIT. THE COORDINATES ARE IN THE P, Q, R FRAME IN
ANGSTROM UNITS AND CORRESPOND TO ICOSAHEDRAL SYMMETRY AXES. THE ORIGIN IS
CHOSEN AT THE CENTER OF THE VIRUS WITH P, Q AND R ALONG MUTUALLY PERPENDICULAR
TWO-FOLD AXES OF THE ICOSAHEDRON. THEY SHOULD REMAIN IN THAT FRAME FOR THE EASE
OF THE USER IN CREATING THE BIOLOGICALLY SIGNIFICANT VIRAL COMPLEX PARTICLE
USING THE 60 ICOSAHEDRAL SYMMETRY OPERATORS. RESIDUES NOT VISIBLE IN THE
ORIGINAL CRYSTAL STRUCTURES ARE NOT INCLUDED IN THE CRYO-EM STRUCTURE MODEL.
FOR EXAMPLE, HRV16 RESIDUES 2001-2009, 4008-4022 AND 4045-4068 ARE NOT VISIBLE
IN THE CRYSTAL STRUCTURE (PDB ENTRY 1AYM) AND THEREFORE ARE NOT INCLUDED IN THE
COORDINATES BELOW.
RECIPROCAL
CA TRACING OF A MODEL OF THE CAPSID PROTEIN VP1 OF SPV4
BASED ON THE CRYSTAL STRUCTURAL COORDINATES OF THE
MAJOR CAPSID PROTEIN F OF PHIX174 (RESIDUES 1001 - 1427).
A 71 AMINO ACID PORTION OF VP1 WAS MODELLED (GLY 226 - THR
297) AS AN INSERTION LOOP BETWEEN RESIDUES THR 1187 AND
THR 1188 OF THE F CAPSID PROTEIN OF PHIX174.
THE COORDINATES ARE IN THE P, Q, R FRAME IN ANGSTROM UNITS
AND CORRESPOND TO ICOSAHEDRAL SYMMETRY AXES. THE ORIGIN IS
CHOSEN AT THE CENTER OF THE VIRUS WITH P, Q AND R ALONG
MUTUALLY PERPENDICULAR TWO-FOLD AXES OF THE ICOSAHEDRON.
RESIDUES 1001 - 1187 AND 1187 - 1426 ARE THE CA COORDINATES
OF THE F CAPSID PROTEIN OF PHIX174. INSERTED BETWEEN
RESIDUES 1187 AND 1188 IS A MODELLED CA TRACING OF A 71
AMINO ACID INSERTION LOOP OF SPV4 (RESIDUES 226 - 297) OF
THE VP1 CAPSID PROTEIN, BASED ON THE CRYO-EM RECONSTRUCTION
ENVELOPE AND STRUCTURAL ALIGNMENT AND SECONDARY STRUCTURE
PREDICTION.
THE RESOLUTION OF THE FINAL
RECONSTRUCTED DENSITY MAP WAS DETERMINED TO BE AT LEAST
27 ANGSTROMS AS MEASURED BY STRUCTURE FACTOR COMPARISONS
(BAKER ET AL. 1991, BIOPHYS. J. 60,1445-1456) AND FOURIER
RING CORRELATION MEASUREMENTS (CONWAY ET AL. 1996, J.
STRUC. BIOL. 116, 200-208)
1KVP
COMMON-LINES AND POLAR-FOURIER-TRANSFORM
FULLER ET AL. 1996, J.STRUC.BIOL.c 116, 48-55;
BAKER AND CHENG, 1996, J.STRUC.BIOL. 116, 120-130
27
OTHER
POINT
50 mM Sodium tetraborate
9.2
SPIROPLASMA VIRUS
0
VIRUS
PARTICLE
1
1
SINGLE PARTICLE
18.
KODAK SO-163 FILM
FLOOD BEAM
FEI/PHILIPS EM420
BRIGHT FIELD
800.
49000
1
1KVP
I
NO
NO
NO
YES
ETHANE
1KVP
55834.703
SPV4 CAPSID PROTEIN VP1
1
man
polymer
no
no
SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQ
WIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGF
RCCHLKNIWTAPLPPETELSRQMTTSTGMAPVTTKFRDVPNLSGTPLIFRDNKGRTIKTGQLGIGPVDAGFLVAQNTAQA
ANGERAIPSNLWADLSNATSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLWASGYDV
DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREIS
MKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFN
VTVYRNLPTTRDSIMTS
SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQ
WIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGF
RCCHLKNIWTAPLPPETELSRQMTTSTGMAPVTTKFRDVPNLSGTPLIFRDNKGRTIKTGQLGIGPVDAGFLVAQNTAQA
ANGERAIPSNLWADLSNATSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLWASGYDV
DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREIS
MKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFN
VTVYRNLPTTRDSIMTS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
10847
Enterobacteria phage phiX174
2134
Spiroplasma melliferum
chem_comp_atom
chem_comp_bond
database_2
em_image_scans
pdbx_database_status
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1999-02-23
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.type
_struct_ref_seq_dif.details
CA ATOMS ONLY
Y
BNL
1997-12-12
REL
532
I
SER
1001
n
1
SER
1001
A
ASN
1002
n
2
ASN
1002
A
ILE
1003
n
3
ILE
1003
A
GLN
1004
n
4
GLN
1004
A
THR
1005
n
5
THR
1005
A
GLY
1006
n
6
GLY
1006
A
ALA
1007
n
7
ALA
1007
A
GLU
1008
n
8
GLU
1008
A
ARG
1009
n
9
ARG
1009
A
MET
1010
n
10
MET
1010
A
PRO
1011
n
11
PRO
1011
A
HIS
1012
n
12
HIS
1012
A
ASP
1013
n
13
ASP
1013
A
LEU
1014
n
14
LEU
1014
A
SER
1015
n
15
SER
1015
A
HIS
1016
n
16
HIS
1016
A
LEU
1017
n
17
LEU
1017
A
GLY
1018
n
18
GLY
1018
A
PHE
1019
n
19
PHE
1019
A
LEU
1020
n
20
LEU
1020
A
ALA
1021
n
21
ALA
1021
A
GLY
1022
n
22
GLY
1022
A
GLN
1023
n
23
GLN
1023
A
ILE
1024
n
24
ILE
1024
A
GLY
1025
n
25
GLY
1025
A
ARG
1026
n
26
ARG
1026
A
LEU
1027
n
27
LEU
1027
A
ILE
1028
n
28
ILE
1028
A
THR
1029
n
29
THR
1029
A
ILE
1030
n
30
ILE
1030
A
SER
1031
n
31
SER
1031
A
THR
1032
n
32
THR
1032
A
THR
1033
n
33
THR
1033
A
PRO
1034
n
34
PRO
1034
A
VAL
1035
n
35
VAL
1035
A
ILE
1036
n
36
ILE
1036
A
ALA
1037
n
37
ALA
1037
A
GLY
1038
n
38
GLY
1038
A
ASP
1039
n
39
ASP
1039
A
SER
1040
n
40
SER
1040
A
PHE
1041
n
41
PHE
1041
A
GLU
1042
n
42
GLU
1042
A
MET
1043
n
43
MET
1043
A
ASP
1044
n
44
ASP
1044
A
ALA
1045
n
45
ALA
1045
A
VAL
1046
n
46
VAL
1046
A
GLY
1047
n
47
GLY
1047
A
ALA
1048
n
48
ALA
1048
A
LEU
1049
n
49
LEU
1049
A
ARG
1050
n
50
ARG
1050
A
LEU
1051
n
51
LEU
1051
A
SER
1052
n
52
SER
1052
A
PRO
1053
n
53
PRO
1053
A
LEU
1054
n
54
LEU
1054
A
ARG
1055
n
55
ARG
1055
A
ARG
1056
n
56
ARG
1056
A
GLY
1057
n
57
GLY
1057
A
LEU
1058
n
58
LEU
1058
A
ALA
1059
n
59
ALA
1059
A
ILE
1060
n
60
ILE
1060
A
ASP
1061
n
61
ASP
1061
A
SER
1062
n
62
SER
1062
A
THR
1063
n
63
THR
1063
A
VAL
1064
n
64
VAL
1064
A
ASP
1065
n
65
ASP
1065
A
ILE
1066
n
66
ILE
1066
A
PHE
1067
n
67
PHE
1067
A
THR
1068
n
68
THR
1068
A
PHE
1069
n
69
PHE
1069
A
TYR
1070
n
70
TYR
1070
A
VAL
1071
n
71
VAL
1071
A
PRO
1072
n
72
PRO
1072
A
HIS
1073
n
73
HIS
1073
A
ARG
1074
n
74
ARG
1074
A
HIS
1075
n
75
HIS
1075
A
VAL
1076
n
76
VAL
1076
A
TYR
1077
n
77
TYR
1077
A
GLY
1078
n
78
GLY
1078
A
GLU
1079
n
79
GLU
1079
A
GLN
1080
n
80
GLN
1080
A
TRP
1081
n
81
TRP
1081
A
ILE
1082
n
82
ILE
1082
A
LYS
1083
n
83
LYS
1083
A
PHE
1084
n
84
PHE
1084
A
MET
1085
n
85
MET
1085
A
LYS
1086
n
86
LYS
1086
A
ASP
1087
n
87
ASP
1087
A
GLY
1088
n
88
GLY
1088
A
VAL
1089
n
89
VAL
1089
A
ASN
1090
n
90
ASN
1090
A
ALA
1091
n
91
ALA
1091
A
THR
1092
n
92
THR
1092
A
PRO
1093
n
93
PRO
1093
A
LEU
1094
n
94
LEU
1094
A
PRO
1095
n
95
PRO
1095
A
THR
1096
n
96
THR
1096
A
VAL
1097
n
97
VAL
1097
A
ASN
1098
n
98
ASN
1098
A
THR
1099
n
99
THR
1099
A
THR
1100
n
100
THR
1100
A
GLY
1101
n
101
GLY
1101
A
TYR
1102
n
102
TYR
1102
A
ILE
1103
n
103
ILE
1103
A
ASP
1104
n
104
ASP
1104
A
HIS
1105
n
105
HIS
1105
A
ALA
1106
n
106
ALA
1106
A
ALA
1107
n
107
ALA
1107
A
PHE
1108
n
108
PHE
1108
A
LEU
1109
n
109
LEU
1109
A
GLY
1110
n
110
GLY
1110
A
THR
1111
n
111
THR
1111
A
ILE
1112
n
112
ILE
1112
A
ASN
1113
n
113
ASN
1113
A
PRO
1114
n
114
PRO
1114
A
ASP
1115
n
115
ASP
1115
A
THR
1116
n
116
THR
1116
A
ASN
1117
n
117
ASN
1117
A
LYS
1118
n
118
LYS
1118
A
ILE
1119
n
119
ILE
1119
A
PRO
1120
n
120
PRO
1120
A
LYS
1121
n
121
LYS
1121
A
HIS
1122
n
122
HIS
1122
A
LEU
1123
n
123
LEU
1123
A
PHE
1124
n
124
PHE
1124
A
GLN
1125
n
125
GLN
1125
A
GLY
1126
n
126
GLY
1126
A
TYR
1127
n
127
TYR
1127
A
LEU
1128
n
128
LEU
1128
A
ASN
1129
n
129
ASN
1129
A
ILE
1130
n
130
ILE
1130
A
TYR
1131
n
131
TYR
1131
A
ASN
1132
n
132
ASN
1132
A
ASN
1133
n
133
ASN
1133
A
TYR
1134
n
134
TYR
1134
A
PHE
1135
n
135
PHE
1135
A
LYS
1136
n
136
LYS
1136
A
ALA
1137
n
137
ALA
1137
A
PRO
1138
n
138
PRO
1138
A
TRP
1139
n
139
TRP
1139
A
MET
1140
n
140
MET
1140
A
PRO
1141
n
141
PRO
1141
A
ASP
1142
n
142
ASP
1142
A
ARG
1143
n
143
ARG
1143
A
THR
1144
n
144
THR
1144
A
GLU
1145
n
145
GLU
1145
A
ALA
1146
n
146
ALA
1146
A
ASN
1147
n
147
ASN
1147
A
PRO
1148
n
148
PRO
1148
A
ASN
1149
n
149
ASN
1149
A
GLU
1150
n
150
GLU
1150
A
LEU
1151
n
151
LEU
1151
A
ASN
1152
n
152
ASN
1152
A
GLN
1153
n
153
GLN
1153
A
ASP
1154
n
154
ASP
1154
A
ASP
1155
n
155
ASP
1155
A
ALA
1156
n
156
ALA
1156
A
ARG
1157
n
157
ARG
1157
A
TYR
1158
n
158
TYR
1158
A
GLY
1159
n
159
GLY
1159
A
PHE
1160
n
160
PHE
1160
A
ARG
1161
n
161
ARG
1161
A
CYS
1162
n
162
CYS
1162
A
CYS
1163
n
163
CYS
1163
A
HIS
1164
n
164
HIS
1164
A
LEU
1165
n
165
LEU
1165
A
LYS
1166
n
166
LYS
1166
A
ASN
1167
n
167
ASN
1167
A
ILE
1168
n
168
ILE
1168
A
TRP
1169
n
169
TRP
1169
A
THR
1170
n
170
THR
1170
A
ALA
1171
n
171
ALA
1171
A
PRO
1172
n
172
PRO
1172
A
LEU
1173
n
173
LEU
1173
A
PRO
1174
n
174
PRO
1174
A
PRO
1175
n
175
PRO
1175
A
GLU
1176
n
176
GLU
1176
A
THR
1177
n
177
THR
1177
A
GLU
1178
n
178
GLU
1178
A
LEU
1179
n
179
LEU
1179
A
SER
1180
n
180
SER
1180
A
ARG
1181
n
181
ARG
1181
A
GLN
1182
n
182
GLN
1182
A
MET
1183
n
183
MET
1183
A
THR
1184
n
184
THR
1184
A
THR
1185
n
185
THR
1185
A
SER
1186
n
186
SER
1186
A
THR
1187
n
187
THR
1187
A
GLY
1
n
188
GLY
1
A
MET
2
n
189
MET
2
A
ALA
3
n
190
ALA
3
A
PRO
4
n
191
PRO
4
A
VAL
5
n
192
VAL
5
A
THR
6
n
193
THR
6
A
THR
7
n
194
THR
7
A
LYS
8
n
195
LYS
8
A
PHE
9
n
196
PHE
9
A
ARG
10
n
197
ARG
10
A
ASP
11
n
198
ASP
11
A
VAL
12
n
199
VAL
12
A
PRO
13
n
200
PRO
13
A
ASN
14
n
201
ASN
14
A
LEU
15
n
202
LEU
15
A
SER
16
n
203
SER
16
A
GLY
17
n
204
GLY
17
A
THR
18
n
205
THR
18
A
PRO
19
n
206
PRO
19
A
LEU
20
n
207
LEU
20
A
ILE
21
n
208
ILE
21
A
PHE
22
n
209
PHE
22
A
ARG
23
n
210
ARG
23
A
ASP
24
n
211
ASP
24
A
ASN
25
n
212
ASN
25
A
LYS
26
n
213
LYS
26
A
GLY
27
n
214
GLY
27
A
ARG
28
n
215
ARG
28
A
THR
29
n
216
THR
29
A
ILE
30
n
217
ILE
30
A
LYS
31
n
218
LYS
31
A
THR
32
n
219
THR
32
A
GLY
33
n
220
GLY
33
A
GLN
34
n
221
GLN
34
A
LEU
35
n
222
LEU
35
A
GLY
36
n
223
GLY
36
A
ILE
37
n
224
ILE
37
A
GLY
38
n
225
GLY
38
A
PRO
39
n
226
PRO
39
A
VAL
40
n
227
VAL
40
A
ASP
41
n
228
ASP
41
A
ALA
42
n
229
ALA
42
A
GLY
43
n
230
GLY
43
A
PHE
44
n
231
PHE
44
A
LEU
45
n
232
LEU
45
A
VAL
46
n
233
VAL
46
A
ALA
47
n
234
ALA
47
A
GLN
48
n
235
GLN
48
A
ASN
49
n
236
ASN
49
A
THR
50
n
237
THR
50
A
ALA
51
n
238
ALA
51
A
GLN
52
n
239
GLN
52
A
ALA
53
n
240
ALA
53
A
ALA
54
n
241
ALA
54
A
ASN
55
n
242
ASN
55
A
GLY
56
n
243
GLY
56
A
GLU
57
n
244
GLU
57
A
ARG
58
n
245
ARG
58
A
ALA
59
n
246
ALA
59
A
ILE
60
n
247
ILE
60
A
PRO
61
n
248
PRO
61
A
SER
62
n
249
SER
62
A
ASN
63
n
250
ASN
63
A
LEU
64
n
251
LEU
64
A
TRP
65
n
252
TRP
65
A
ALA
66
n
253
ALA
66
A
ASP
67
n
254
ASP
67
A
LEU
68
n
255
LEU
68
A
SER
69
n
256
SER
69
A
ASN
70
n
257
ASN
70
A
ALA
71
n
258
ALA
71
A
THR
1188
n
259
THR
1188
A
SER
1189
n
260
SER
1189
A
ILE
1190
n
261
ILE
1190
A
ASP
1191
n
262
ASP
1191
A
ILE
1192
n
263
ILE
1192
A
MET
1193
n
264
MET
1193
A
GLY
1194
n
265
GLY
1194
A
LEU
1195
n
266
LEU
1195
A
GLN
1196
n
267
GLN
1196
A
ALA
1197
n
268
ALA
1197
A
ALA
1198
n
269
ALA
1198
A
TYR
1199
n
270
TYR
1199
A
ALA
1200
n
271
ALA
1200
A
ASN
1201
n
272
ASN
1201
A
LEU
1202
n
273
LEU
1202
A
HIS
1203
n
274
HIS
1203
A
THR
1204
n
275
THR
1204
A
ASP
1205
n
276
ASP
1205
A
GLN
1206
n
277
GLN
1206
A
GLU
1207
n
278
GLU
1207
A
ARG
1208
n
279
ARG
1208
A
ASP
1209
n
280
ASP
1209
A
TYR
1210
n
281
TYR
1210
A
PHE
1211
n
282
PHE
1211
A
MET
1212
n
283
MET
1212
A
GLN
1213
n
284
GLN
1213
A
ARG
1214
n
285
ARG
1214
A
TYR
1215
n
286
TYR
1215
A
ARG
1216
n
287
ARG
1216
A
ASP
1217
n
288
ASP
1217
A
VAL
1218
n
289
VAL
1218
A
ILE
1219
n
290
ILE
1219
A
SER
1220
n
291
SER
1220
A
SER
1221
n
292
SER
1221
A
PHE
1222
n
293
PHE
1222
A
GLY
1223
n
294
GLY
1223
A
GLY
1224
n
295
GLY
1224
A
LYS
1225
n
296
LYS
1225
A
THR
1226
n
297
THR
1226
A
SER
1227
n
298
SER
1227
A
TYR
1228
n
299
TYR
1228
A
ASP
1229
n
300
ASP
1229
A
ALA
1230
n
301
ALA
1230
A
ASP
1231
n
302
ASP
1231
A
ASN
1232
n
303
ASN
1232
A
ARG
1233
n
304
ARG
1233
A
PRO
1234
n
305
PRO
1234
A
LEU
1235
n
306
LEU
1235
A
LEU
1236
n
307
LEU
1236
A
VAL
1237
n
308
VAL
1237
A
MET
1238
n
309
MET
1238
A
ARG
1239
n
310
ARG
1239
A
SER
1240
n
311
SER
1240
A
ASN
1241
n
312
ASN
1241
A
LEU
1242
n
313
LEU
1242
A
TRP
1243
n
314
TRP
1243
A
ALA
1244
n
315
ALA
1244
A
SER
1245
n
316
SER
1245
A
GLY
1246
n
317
GLY
1246
A
TYR
1247
n
318
TYR
1247
A
ASP
1248
n
319
ASP
1248
A
VAL
1249
n
320
VAL
1249
A
ASP
1250
n
321
ASP
1250
A
GLY
1251
n
322
GLY
1251
A
THR
1252
n
323
THR
1252
A
ASP
1253
n
324
ASP
1253
A
GLN
1254
n
325
GLN
1254
A
THR
1255
n
326
THR
1255
A
SER
1256
n
327
SER
1256
A
LEU
1257
n
328
LEU
1257
A
GLY
1258
n
329
GLY
1258
A
GLN
1259
n
330
GLN
1259
A
PHE
1260
n
331
PHE
1260
A
SER
1261
n
332
SER
1261
A
GLY
1262
n
333
GLY
1262
A
ARG
1263
n
334
ARG
1263
A
VAL
1264
n
335
VAL
1264
A
GLN
1265
n
336
GLN
1265
A
GLN
1266
n
337
GLN
1266
A
THR
1267
n
338
THR
1267
A
TYR
1268
n
339
TYR
1268
A
LYS
1269
n
340
LYS
1269
A
HIS
1270
n
341
HIS
1270
A
SER
1271
n
342
SER
1271
A
VAL
1272
n
343
VAL
1272
A
PRO
1273
n
344
PRO
1273
A
ARG
1274
n
345
ARG
1274
A
PHE
1275
n
346
PHE
1275
A
PHE
1276
n
347
PHE
1276
A
VAL
1277
n
348
VAL
1277
A
PRO
1278
n
349
PRO
1278
A
GLU
1279
n
350
GLU
1279
A
HIS
1280
n
351
HIS
1280
A
GLY
1281
n
352
GLY
1281
A
THR
1282
n
353
THR
1282
A
MET
1283
n
354
MET
1283
A
PHE
1284
n
355
PHE
1284
A
THR
1285
n
356
THR
1285
A
LEU
1286
n
357
LEU
1286
A
ALA
1287
n
358
ALA
1287
A
LEU
1288
n
359
LEU
1288
A
VAL
1289
n
360
VAL
1289
A
ARG
1290
n
361
ARG
1290
A
PHE
1291
n
362
PHE
1291
A
PRO
1292
n
363
PRO
1292
A
PRO
1293
n
364
PRO
1293
A
THR
1294
n
365
THR
1294
A
ALA
1295
n
366
ALA
1295
A
THR
1296
n
367
THR
1296
A
LYS
1297
n
368
LYS
1297
A
GLU
1298
n
369
GLU
1298
A
ILE
1299
n
370
ILE
1299
A
GLN
1300
n
371
GLN
1300
A
TYR
1301
n
372
TYR
1301
A
LEU
1302
n
373
LEU
1302
A
ASN
1303
n
374
ASN
1303
A
ALA
1304
n
375
ALA
1304
A
LYS
1305
n
376
LYS
1305
A
GLY
1306
n
377
GLY
1306
A
ALA
1307
n
378
ALA
1307
A
LEU
1308
n
379
LEU
1308
A
THR
1309
n
380
THR
1309
A
TYR
1310
n
381
TYR
1310
A
THR
1311
n
382
THR
1311
A
ASP
1312
n
383
ASP
1312
A
ILE
1313
n
384
ILE
1313
A
ALA
1314
n
385
ALA
1314
A
GLY
1315
n
386
GLY
1315
A
ASP
1316
n
387
ASP
1316
A
PRO
1317
n
388
PRO
1317
A
VAL
1318
n
389
VAL
1318
A
LEU
1319
n
390
LEU
1319
A
TYR
1320
n
391
TYR
1320
A
GLY
1321
n
392
GLY
1321
A
ASN
1322
n
393
ASN
1322
A
LEU
1323
n
394
LEU
1323
A
PRO
1324
n
395
PRO
1324
A
PRO
1325
n
396
PRO
1325
A
ARG
1326
n
397
ARG
1326
A
GLU
1327
n
398
GLU
1327
A
ILE
1328
n
399
ILE
1328
A
SER
1329
n
400
SER
1329
A
MET
1330
n
401
MET
1330
A
LYS
1331
n
402
LYS
1331
A
ASP
1332
n
403
ASP
1332
A
VAL
1333
n
404
VAL
1333
A
PHE
1334
n
405
PHE
1334
A
ARG
1335
n
406
ARG
1335
A
SER
1336
n
407
SER
1336
A
GLY
1337
n
408
GLY
1337
A
ASP
1338
n
409
ASP
1338
A
SER
1339
n
410
SER
1339
A
SER
1340
n
411
SER
1340
A
LYS
1341
n
412
LYS
1341
A
LYS
1342
n
413
LYS
1342
A
PHE
1343
n
414
PHE
1343
A
LYS
1344
n
415
LYS
1344
A
ILE
1345
n
416
ILE
1345
A
ALA
1346
n
417
ALA
1346
A
GLU
1347
n
418
GLU
1347
A
GLY
1348
n
419
GLY
1348
A
GLN
1349
n
420
GLN
1349
A
TRP
1350
n
421
TRP
1350
A
TYR
1351
n
422
TYR
1351
A
ARG
1352
n
423
ARG
1352
A
TYR
1353
n
424
TYR
1353
A
ALA
1354
n
425
ALA
1354
A
PRO
1355
n
426
PRO
1355
A
SER
1356
n
427
SER
1356
A
TYR
1357
n
428
TYR
1357
A
VAL
1358
n
429
VAL
1358
A
SER
1359
n
430
SER
1359
A
PRO
1360
n
431
PRO
1360
A
ALA
1361
n
432
ALA
1361
A
TYR
1362
n
433
TYR
1362
A
HIS
1363
n
434
HIS
1363
A
LEU
1364
n
435
LEU
1364
A
LEU
1365
n
436
LEU
1365
A
GLU
1366
n
437
GLU
1366
A
GLY
1367
n
438
GLY
1367
A
PHE
1368
n
439
PHE
1368
A
PRO
1369
n
440
PRO
1369
A
PHE
1370
n
441
PHE
1370
A
ILE
1371
n
442
ILE
1371
A
GLN
1372
n
443
GLN
1372
A
GLU
1373
n
444
GLU
1373
A
PRO
1374
n
445
PRO
1374
A
PRO
1375
n
446
PRO
1375
A
SER
1376
n
447
SER
1376
A
GLY
1377
n
448
GLY
1377
A
ASP
1378
n
449
ASP
1378
A
LEU
1379
n
450
LEU
1379
A
GLN
1380
n
451
GLN
1380
A
GLU
1381
n
452
GLU
1381
A
ARG
1382
n
453
ARG
1382
A
VAL
1383
n
454
VAL
1383
A
LEU
1384
n
455
LEU
1384
A
ILE
1385
n
456
ILE
1385
A
ARG
1386
n
457
ARG
1386
A
HIS
1387
n
458
HIS
1387
A
HIS
1388
n
459
HIS
1388
A
ASP
1389
n
460
ASP
1389
A
TYR
1390
n
461
TYR
1390
A
ASP
1391
n
462
ASP
1391
A
GLN
1392
n
463
GLN
1392
A
CYS
1393
n
464
CYS
1393
A
PHE
1394
n
465
PHE
1394
A
GLN
1395
n
466
GLN
1395
A
SER
1396
n
467
SER
1396
A
VAL
1397
n
468
VAL
1397
A
GLN
1398
n
469
GLN
1398
A
LEU
1399
n
470
LEU
1399
A
LEU
1400
n
471
LEU
1400
A
GLN
1401
n
472
GLN
1401
A
TRP
1402
n
473
TRP
1402
A
ASN
1403
n
474
ASN
1403
A
SER
1404
n
475
SER
1404
A
GLN
1405
n
476
GLN
1405
A
VAL
1406
n
477
VAL
1406
A
LYS
1407
n
478
LYS
1407
A
PHE
1408
n
479
PHE
1408
A
ASN
1409
n
480
ASN
1409
A
VAL
1410
n
481
VAL
1410
A
THR
1411
n
482
THR
1411
A
VAL
1412
n
483
VAL
1412
A
TYR
1413
n
484
TYR
1413
A
ARG
1414
n
485
ARG
1414
A
ASN
1415
n
486
ASN
1415
A
LEU
1416
n
487
LEU
1416
A
PRO
1417
n
488
PRO
1417
A
THR
1418
n
489
THR
1418
A
THR
1419
n
490
THR
1419
A
ARG
1420
n
491
ARG
1420
A
ASP
1421
n
492
ASP
1421
A
SER
1422
n
493
SER
1422
A
ILE
1423
n
494
ILE
1423
A
MET
1424
n
495
MET
1424
A
THR
1425
n
496
THR
1425
A
SER
1426
n
497
SER
1426
A
complete icosahedral assembly
60
60-MERIC
icosahedral asymmetric unit
1
monomeric
icosahedral pentamer
5
pentameric
icosahedral 23 hexamer
6
hexameric
icosahedral asymmetric unit, std point frame
1
monomeric
0.00000000
-1.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
0.00000000
1.00000000
transform to point frame
0.00000
0.00000
-0.00000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
1_555
x,y,z
identity operation
0.00000
0.00000
0.00000
0.50000000
-0.80901699
0.30901699
0.80901699
0.30901699
-0.50000000
0.30901699
0.50000000
0.80901699
point symmetry operation
0.00000
0.00000
0.00000
-0.30901699
-0.50000000
0.80901699
0.50000000
-0.80901699
-0.30901699
0.80901699
0.30901699
0.50000000
point symmetry operation
0.00000
0.00000
0.00000
-0.30901699
0.50000000
0.80901699
-0.50000000
-0.80901699
0.30901699
0.80901699
-0.30901699
0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.50000000
0.80901699
0.30901699
-0.80901699
0.30901699
0.50000000
0.30901699
-0.50000000
0.80901699
point symmetry operation
0.00000
0.00000
0.00000
-1.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
point symmetry operation
0.00000
0.00000
0.00000
-0.50000000
0.80901699
-0.30901699
-0.80901699
-0.30901699
0.50000000
0.30901699
0.50000000
0.80901699
point symmetry operation
0.00000
0.00000
0.00000
0.30901699
0.50000000
-0.80901699
-0.50000000
0.80901699
0.30901699
0.80901699
0.30901699
0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.30901699
-0.50000000
-0.80901699
0.50000000
0.80901699
-0.30901699
0.80901699
-0.30901699
0.50000000
point symmetry operation
0.00000
0.00000
0.00000
-0.50000000
-0.80901699
-0.30901699
0.80901699
-0.30901699
-0.50000000
0.30901699
-0.50000000
0.80901699
point symmetry operation
0.00000
0.00000
0.00000
1.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
point symmetry operation
0.00000
0.00000
0.00000
0.50000000
-0.80901699
0.30901699
-0.80901699
-0.30901699
0.50000000
-0.30901699
-0.50000000
-0.80901699
point symmetry operation
0.00000
0.00000
0.00000
-0.30901699
-0.50000000
0.80901699
-0.50000000
0.80901699
0.30901699
-0.80901699
-0.30901699
-0.50000000
point symmetry operation
0.00000
0.00000
0.00000
-0.30901699
0.50000000
0.80901699
0.50000000
0.80901699
-0.30901699
-0.80901699
0.30901699
-0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.50000000
0.80901699
0.30901699
0.80901699
-0.30901699
-0.50000000
-0.30901699
0.50000000
-0.80901699
point symmetry operation
0.00000
0.00000
0.00000
-1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
point symmetry operation
0.00000
0.00000
0.00000
-0.50000000
0.80901699
-0.30901699
0.80901699
0.30901699
-0.50000000
-0.30901699
-0.50000000
-0.80901699
point symmetry operation
0.00000
0.00000
0.00000
0.30901699
0.50000000
-0.80901699
0.50000000
-0.80901699
-0.30901699
-0.80901699
-0.30901699
-0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.30901699
-0.50000000
-0.80901699
-0.50000000
-0.80901699
0.30901699
-0.80901699
0.30901699
-0.50000000
point symmetry operation
0.00000
0.00000
0.00000
-0.50000000
-0.80901699
-0.30901699
-0.80901699
0.30901699
0.50000000
-0.30901699
0.50000000
-0.80901699
point symmetry operation
0.00000
0.00000
0.00000
0.00000000
-1.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
1.00000000
0.00000000
0.00000000
point symmetry operation
0.00000
0.00000
0.00000
-0.80901699
-0.30901699
0.50000000
-0.30901699
-0.50000000
-0.80901699
0.50000000
-0.80901699
0.30901699
point symmetry operation
0.00000
0.00000
0.00000
-0.50000000
0.80901699
0.30901699
-0.80901699
-0.30901699
-0.50000000
-0.30901699
-0.50000000
0.80901699
point symmetry operation
0.00000
0.00000
0.00000
0.50000000
0.80901699
-0.30901699
-0.80901699
0.30901699
-0.50000000
-0.30901699
0.50000000
0.80901699
point symmetry operation
0.00000
0.00000
0.00000
0.80901699
-0.30901699
-0.50000000
-0.30901699
0.50000000
-0.80901699
0.50000000
0.80901699
0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
-1.00000000
0.00000000
0.00000000
point symmetry operation
0.00000
0.00000
0.00000
0.80901699
0.30901699
-0.50000000
-0.30901699
-0.50000000
-0.80901699
-0.50000000
0.80901699
-0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.50000000
-0.80901699
-0.30901699
-0.80901699
-0.30901699
-0.50000000
0.30901699
0.50000000
-0.80901699
point symmetry operation
0.00000
0.00000
0.00000
-0.50000000
-0.80901699
0.30901699
-0.80901699
0.30901699
-0.50000000
0.30901699
-0.50000000
-0.80901699
point symmetry operation
0.00000
0.00000
0.00000
-0.80901699
0.30901699
0.50000000
-0.30901699
0.50000000
-0.80901699
-0.50000000
-0.80901699
-0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
1.00000000
0.00000000
0.00000000
point symmetry operation
0.00000
0.00000
0.00000
0.80901699
0.30901699
-0.50000000
0.30901699
0.50000000
0.80901699
0.50000000
-0.80901699
0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.50000000
-0.80901699
-0.30901699
0.80901699
0.30901699
0.50000000
-0.30901699
-0.50000000
0.80901699
point symmetry operation
0.00000
0.00000
0.00000
-0.50000000
-0.80901699
0.30901699
0.80901699
-0.30901699
0.50000000
-0.30901699
0.50000000
0.80901699
point symmetry operation
0.00000
0.00000
0.00000
-0.80901699
0.30901699
0.50000000
0.30901699
-0.50000000
0.80901699
0.50000000
0.80901699
0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.00000000
-1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
-1.00000000
0.00000000
0.00000000
point symmetry operation
0.00000
0.00000
0.00000
-0.80901699
-0.30901699
0.50000000
0.30901699
0.50000000
0.80901699
-0.50000000
0.80901699
-0.30901699
point symmetry operation
0.00000
0.00000
0.00000
-0.50000000
0.80901699
0.30901699
0.80901699
0.30901699
0.50000000
0.30901699
0.50000000
-0.80901699
point symmetry operation
0.00000
0.00000
0.00000
0.50000000
0.80901699
-0.30901699
0.80901699
-0.30901699
0.50000000
0.30901699
-0.50000000
-0.80901699
point symmetry operation
0.00000
0.00000
0.00000
0.80901699
-0.30901699
-0.50000000
0.30901699
-0.50000000
0.80901699
-0.50000000
-0.80901699
-0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.00000000
0.00000000
1.00000000
-1.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
0.00000000
point symmetry operation
0.00000
0.00000
0.00000
0.30901699
0.50000000
0.80901699
-0.50000000
0.80901699
-0.30901699
-0.80901699
-0.30901699
0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.80901699
0.30901699
0.50000000
0.30901699
0.50000000
-0.80901699
-0.50000000
0.80901699
0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.80901699
-0.30901699
0.50000000
0.30901699
-0.50000000
-0.80901699
0.50000000
0.80901699
-0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.30901699
-0.50000000
0.80901699
-0.50000000
-0.80901699
-0.30901699
0.80901699
-0.30901699
-0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.00000000
0.00000000
1.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
point symmetry operation
0.00000
0.00000
0.00000
0.30901699
0.50000000
0.80901699
0.50000000
-0.80901699
0.30901699
0.80901699
0.30901699
-0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.80901699
0.30901699
0.50000000
-0.30901699
-0.50000000
0.80901699
0.50000000
-0.80901699
-0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.80901699
-0.30901699
0.50000000
-0.30901699
0.50000000
0.80901699
-0.50000000
-0.80901699
0.30901699
point symmetry operation
0.00000
0.00000
0.00000
0.30901699
-0.50000000
0.80901699
0.50000000
0.80901699
0.30901699
-0.80901699
0.30901699
0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.00000000
0.00000000
-1.00000000
-1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
point symmetry operation
0.00000
0.00000
0.00000
-0.30901699
-0.50000000
-0.80901699
-0.50000000
0.80901699
-0.30901699
0.80901699
0.30901699
-0.50000000
point symmetry operation
0.00000
0.00000
0.00000
-0.80901699
-0.30901699
-0.50000000
0.30901699
0.50000000
-0.80901699
0.50000000
-0.80901699
-0.30901699
point symmetry operation
0.00000
0.00000
0.00000
-0.80901699
0.30901699
-0.50000000
0.30901699
-0.50000000
-0.80901699
-0.50000000
-0.80901699
0.30901699
point symmetry operation
0.00000
0.00000
0.00000
-0.30901699
0.50000000
-0.80901699
-0.50000000
-0.80901699
-0.30901699
-0.80901699
0.30901699
0.50000000
point symmetry operation
0.00000
0.00000
0.00000
0.00000000
0.00000000
-1.00000000
1.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
0.00000000
point symmetry operation
0.00000
0.00000
0.00000
-0.30901699
-0.50000000
-0.80901699
0.50000000
-0.80901699
0.30901699
-0.80901699
-0.30901699
0.50000000
point symmetry operation
0.00000
0.00000
0.00000
-0.80901699
-0.30901699
-0.50000000
-0.30901699
-0.50000000
0.80901699
-0.50000000
0.80901699
0.30901699
point symmetry operation
0.00000
0.00000
0.00000
-0.80901699
0.30901699
-0.50000000
-0.30901699
0.50000000
0.80901699
0.50000000
0.80901699
-0.30901699
point symmetry operation
0.00000
0.00000
0.00000
-0.30901699
0.50000000
-0.80901699
0.50000000
0.80901699
0.30901699
0.80901699
-0.30901699
-0.50000000
point symmetry operation
0.00000
0.00000
0.00000
27.0
1
27.0
0
497
0
0
497
STRUCTURAL ANALYSIS OF THE SPIROPLASMA VIRUS, SPV4, IMPLICATIONS FOR EVOLUTIONARY VARIATION TO OBTAIN HOST DIVERSITY AMONG THE MICROVIRIDAE, ELECTRON MICROSCOPY, ALPHA CARBONS ONLY
1
N
N
VIRUS
BACTERIOPHAGE SPV4 COAT PROTEIN, CHIMERA, Icosahedral virus, Virus
VGF_BPPHX
UNP
1
1
P03641
SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQ
WIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGF
RCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRS
NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLY
GNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLL
QWNSQVKFNVTVYRNLPTTRDSIMTS
1
426
1KVP
1001
1426
P03641
A
1
1
497
1
insertion
GLY
1
1KVP
A
P03641
UNP
188
1
insertion
MET
2
1KVP
A
P03641
UNP
189
1
insertion
ALA
3
1KVP
A
P03641
UNP
190
1
insertion
PRO
4
1KVP
A
P03641
UNP
191
1
insertion
VAL
5
1KVP
A
P03641
UNP
192
1
insertion
THR
6
1KVP
A
P03641
UNP
193
1
insertion
THR
7
1KVP
A
P03641
UNP
194
1
insertion
LYS
8
1KVP
A
P03641
UNP
195
1
insertion
PHE
9
1KVP
A
P03641
UNP
196
1
insertion
ARG
10
1KVP
A
P03641
UNP
197
1
insertion
ASP
11
1KVP
A
P03641
UNP
198
1
insertion
VAL
12
1KVP
A
P03641
UNP
199
1
insertion
PRO
13
1KVP
A
P03641
UNP
200
1
insertion
ASN
14
1KVP
A
P03641
UNP
201
1
insertion
LEU
15
1KVP
A
P03641
UNP
202
1
insertion
SER
16
1KVP
A
P03641
UNP
203
1
insertion
GLY
17
1KVP
A
P03641
UNP
204
1
insertion
THR
18
1KVP
A
P03641
UNP
205
1
insertion
PRO
19
1KVP
A
P03641
UNP
206
1
insertion
LEU
20
1KVP
A
P03641
UNP
207
1
insertion
ILE
21
1KVP
A
P03641
UNP
208
1
insertion
PHE
22
1KVP
A
P03641
UNP
209
1
insertion
ARG
23
1KVP
A
P03641
UNP
210
1
insertion
ASP
24
1KVP
A
P03641
UNP
211
1
insertion
ASN
25
1KVP
A
P03641
UNP
212
1
insertion
LYS
26
1KVP
A
P03641
UNP
213
1
insertion
GLY
27
1KVP
A
P03641
UNP
214
1
insertion
ARG
28
1KVP
A
P03641
UNP
215
1
insertion
THR
29
1KVP
A
P03641
UNP
216
1
insertion
ILE
30
1KVP
A
P03641
UNP
217
1
insertion
LYS
31
1KVP
A
P03641
UNP
218
1
insertion
THR
32
1KVP
A
P03641
UNP
219
1
insertion
GLY
33
1KVP
A
P03641
UNP
220
1
insertion
GLN
34
1KVP
A
P03641
UNP
221
1
insertion
LEU
35
1KVP
A
P03641
UNP
222
1
insertion
GLY
36
1KVP
A
P03641
UNP
223
1
insertion
ILE
37
1KVP
A
P03641
UNP
224
1
insertion
GLY
38
1KVP
A
P03641
UNP
225
1
insertion
PRO
39
1KVP
A
P03641
UNP
226
1
insertion
VAL
40
1KVP
A
P03641
UNP
227
1
insertion
ASP
41
1KVP
A
P03641
UNP
228
1
insertion
ALA
42
1KVP
A
P03641
UNP
229
1
insertion
GLY
43
1KVP
A
P03641
UNP
230
1
insertion
PHE
44
1KVP
A
P03641
UNP
231
1
insertion
LEU
45
1KVP
A
P03641
UNP
232
1
insertion
VAL
46
1KVP
A
P03641
UNP
233
1
insertion
ALA
47
1KVP
A
P03641
UNP
234
1
insertion
GLN
48
1KVP
A
P03641
UNP
235
1
insertion
ASN
49
1KVP
A
P03641
UNP
236
1
insertion
THR
50
1KVP
A
P03641
UNP
237
1
insertion
ALA
51
1KVP
A
P03641
UNP
238
1
insertion
GLN
52
1KVP
A
P03641
UNP
239
1
insertion
ALA
53
1KVP
A
P03641
UNP
240
1
insertion
ALA
54
1KVP
A
P03641
UNP
241
1
insertion
ASN
55
1KVP
A
P03641
UNP
242
1
insertion
GLY
56
1KVP
A
P03641
UNP
243
1
insertion
GLU
57
1KVP
A
P03641
UNP
244
1
insertion
ARG
58
1KVP
A
P03641
UNP
245
1
insertion
ALA
59
1KVP
A
P03641
UNP
246
1
insertion
ILE
60
1KVP
A
P03641
UNP
247
1
insertion
PRO
61
1KVP
A
P03641
UNP
248
1
insertion
SER
62
1KVP
A
P03641
UNP
249
1
insertion
ASN
63
1KVP
A
P03641
UNP
250
1
insertion
LEU
64
1KVP
A
P03641
UNP
251
1
insertion
TRP
65
1KVP
A
P03641
UNP
252
1
insertion
ALA
66
1KVP
A
P03641
UNP
253
1
insertion
ASP
67
1KVP
A
P03641
UNP
254
1
insertion
LEU
68
1KVP
A
P03641
UNP
255
1
insertion
SER
69
1KVP
A
P03641
UNP
256
1
insertion
ASN
70
1KVP
A
P03641
UNP
257
1
insertion
ALA
71
1KVP
A
P03641
UNP
258
1
HIS
conflict
ARG
1216
1KVP
A
P03641
UNP
216
287
1
P 1