1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Hsu, C.-H.
Liao, Y.-D.
Chen, L.-W.
Wu, S.-H.
Chen, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.MOL.BIOL.
JMOBAK
0070
0022-2836
326
1189
1201
10.1016/S0022-2836(02)01472-9
12589762
Solution Structure of the Cytotoxic RNase 4 from the Oocytes of Bullfrog Rana Catesbeiana
2003
10.2210/pdb1kvz/pdb
pdb_00001kvz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
12236.297
RC-RNase4
1
man
polymer
no
no
MQDWATFKKKHLTDTWDVDCDNLMPTSLFDCKDKNTFIYSLPGPVKALCRGVIFSADVLSNSEFYLAECNVKPRKPCKYK
LKKSSNRICIRCEHELPVHFAGVGICP
MQDWATFKKKHLTDTWDVDCDNLMPTSLFDCKDKNTFIYSLPGPVKALCRGVIFSADVLSNSEFYLAECNVKPRKPCKYK
LKKSSNRICIRCEHELPVHFAGVGICP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bullfrog
Rana
Escherichia
Escherichia coli
sample
Oocytes
8400
Rana catesbeiana
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
PET-11d
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Database references
1
0
2002-07-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
1
4
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
RCSB
Y
PDBJ
2002-01-28
REL
REL
This structure was determined using standard 3D hetreonuclear techniques.
structures with the lowest energy
200
15
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNHA
3.5
1
atm
310
K
3.5
1
atm
310
K
simulated annealing
1
closest to the average
1.5mM rRC-RNase4 U-15N, 13C; 50mM phosphate buffer; 90% H2O, 10%
90% H2O/10% D2O
1.5mM rRC-RNase4 U-15N; 50mM phosphate buffer; 90% H2O, 10%
90% H2O/10% D2O
Bruker
processing
XwinNMR
2.6
Bruker
data analysis
AURELIA
2.6
MSI
structure solution
X-PLOR
98
MSI
refinement
X-PLOR
98
600
Bruker
AVANCE
500
Bruker
AMX
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ASP
3
n
3
ASP
3
A
TRP
4
n
4
TRP
4
A
ALA
5
n
5
ALA
5
A
THR
6
n
6
THR
6
A
PHE
7
n
7
PHE
7
A
LYS
8
n
8
LYS
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
HIS
11
n
11
HIS
11
A
LEU
12
n
12
LEU
12
A
THR
13
n
13
THR
13
A
ASP
14
n
14
ASP
14
A
THR
15
n
15
THR
15
A
TRP
16
n
16
TRP
16
A
ASP
17
n
17
ASP
17
A
VAL
18
n
18
VAL
18
A
ASP
19
n
19
ASP
19
A
CYS
20
n
20
CYS
20
A
ASP
21
n
21
ASP
21
A
ASN
22
n
22
ASN
22
A
LEU
23
n
23
LEU
23
A
MET
24
n
24
MET
24
A
PRO
25
n
25
PRO
25
A
THR
26
n
26
THR
26
A
SER
27
n
27
SER
27
A
LEU
28
n
28
LEU
28
A
PHE
29
n
29
PHE
29
A
ASP
30
n
30
ASP
30
A
CYS
31
n
31
CYS
31
A
LYS
32
n
32
LYS
32
A
ASP
33
n
33
ASP
33
A
LYS
34
n
34
LYS
34
A
ASN
35
n
35
ASN
35
A
THR
36
n
36
THR
36
A
PHE
37
n
37
PHE
37
A
ILE
38
n
38
ILE
38
A
TYR
39
n
39
TYR
39
A
SER
40
n
40
SER
40
A
LEU
41
n
41
LEU
41
A
PRO
42
n
42
PRO
42
A
GLY
43
n
43
GLY
43
A
PRO
44
n
44
PRO
44
A
VAL
45
n
45
VAL
45
A
LYS
46
n
46
LYS
46
A
ALA
47
n
47
ALA
47
A
LEU
48
n
48
LEU
48
A
CYS
49
n
49
CYS
49
A
ARG
50
n
50
ARG
50
A
GLY
51
n
51
GLY
51
A
VAL
52
n
52
VAL
52
A
ILE
53
n
53
ILE
53
A
PHE
54
n
54
PHE
54
A
SER
55
n
55
SER
55
A
ALA
56
n
56
ALA
56
A
ASP
57
n
57
ASP
57
A
VAL
58
n
58
VAL
58
A
LEU
59
n
59
LEU
59
A
SER
60
n
60
SER
60
A
ASN
61
n
61
ASN
61
A
SER
62
n
62
SER
62
A
GLU
63
n
63
GLU
63
A
PHE
64
n
64
PHE
64
A
TYR
65
n
65
TYR
65
A
LEU
66
n
66
LEU
66
A
ALA
67
n
67
ALA
67
A
GLU
68
n
68
GLU
68
A
CYS
69
n
69
CYS
69
A
ASN
70
n
70
ASN
70
A
VAL
71
n
71
VAL
71
A
LYS
72
n
72
LYS
72
A
PRO
73
n
73
PRO
73
A
ARG
74
n
74
ARG
74
A
LYS
75
n
75
LYS
75
A
PRO
76
n
76
PRO
76
A
CYS
77
n
77
CYS
77
A
LYS
78
n
78
LYS
78
A
TYR
79
n
79
TYR
79
A
LYS
80
n
80
LYS
80
A
LEU
81
n
81
LEU
81
A
LYS
82
n
82
LYS
82
A
LYS
83
n
83
LYS
83
A
SER
84
n
84
SER
84
A
SER
85
n
85
SER
85
A
ASN
86
n
86
ASN
86
A
ARG
87
n
87
ARG
87
A
ILE
88
n
88
ILE
88
A
CYS
89
n
89
CYS
89
A
ILE
90
n
90
ILE
90
A
ARG
91
n
91
ARG
91
A
CYS
92
n
92
CYS
92
A
GLU
93
n
93
GLU
93
A
HIS
94
n
94
HIS
94
A
GLU
95
n
95
GLU
95
A
LEU
96
n
96
LEU
96
A
PRO
97
n
97
PRO
97
A
VAL
98
n
98
VAL
98
A
HIS
99
n
99
HIS
99
A
PHE
100
n
100
PHE
100
A
ALA
101
n
101
ALA
101
A
GLY
102
n
102
GLY
102
A
VAL
103
n
103
VAL
103
A
GLY
104
n
104
GLY
104
A
ILE
105
n
105
ILE
105
A
CYS
106
n
106
CYS
106
A
PRO
107
n
107
PRO
107
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
13
A
N
THR
13
A
O
ILE
38
A
O
ILE
38
A
N
ASN
35
A
N
ASN
35
A
O
CYS
69
A
O
CYS
69
A
N
LEU
66
A
N
LEU
66
A
O
SER
84
A
O
SER
84
A
N
ALA
56
A
N
ALA
56
A
O
CYS
92
A
O
CYS
92
A
N
CYS
89
A
N
CYS
89
A
O
GLY
102
A
O
GLY
102
5
A
A
O
H
MET
CYS
24
31
1.57
1
A
ARG
50
0.287
SIDE CHAIN
1
A
ARG
74
0.216
SIDE CHAIN
1
A
ARG
87
0.315
SIDE CHAIN
1
A
ARG
91
0.283
SIDE CHAIN
2
A
ARG
50
0.258
SIDE CHAIN
2
A
ARG
74
0.283
SIDE CHAIN
2
A
ARG
87
0.317
SIDE CHAIN
2
A
ARG
91
0.292
SIDE CHAIN
3
A
ARG
50
0.204
SIDE CHAIN
3
A
ARG
74
0.291
SIDE CHAIN
3
A
ARG
87
0.274
SIDE CHAIN
3
A
ARG
91
0.272
SIDE CHAIN
4
A
ARG
50
0.226
SIDE CHAIN
4
A
ARG
74
0.302
SIDE CHAIN
4
A
ARG
87
0.250
SIDE CHAIN
4
A
ARG
91
0.234
SIDE CHAIN
5
A
ARG
50
0.292
SIDE CHAIN
5
A
ARG
74
0.281
SIDE CHAIN
5
A
ARG
87
0.195
SIDE CHAIN
5
A
ARG
91
0.312
SIDE CHAIN
6
A
ARG
50
0.223
SIDE CHAIN
6
A
ARG
74
0.317
SIDE CHAIN
6
A
ARG
87
0.256
SIDE CHAIN
6
A
ARG
91
0.256
SIDE CHAIN
7
A
ARG
50
0.316
SIDE CHAIN
7
A
ARG
74
0.283
SIDE CHAIN
7
A
ARG
87
0.244
SIDE CHAIN
7
A
ARG
91
0.223
SIDE CHAIN
8
A
ARG
50
0.230
SIDE CHAIN
8
A
ARG
74
0.313
SIDE CHAIN
8
A
ARG
87
0.213
SIDE CHAIN
8
A
ARG
91
0.313
SIDE CHAIN
9
A
ARG
50
0.210
SIDE CHAIN
9
A
ARG
74
0.281
SIDE CHAIN
9
A
ARG
87
0.313
SIDE CHAIN
9
A
ARG
91
0.317
SIDE CHAIN
10
A
ARG
50
0.307
SIDE CHAIN
10
A
ARG
74
0.266
SIDE CHAIN
10
A
ARG
87
0.265
SIDE CHAIN
10
A
ARG
91
0.249
SIDE CHAIN
11
A
ARG
50
0.245
SIDE CHAIN
11
A
ARG
74
0.242
SIDE CHAIN
11
A
ARG
87
0.263
SIDE CHAIN
11
A
ARG
91
0.214
SIDE CHAIN
12
A
ARG
50
0.314
SIDE CHAIN
12
A
ARG
74
0.272
SIDE CHAIN
12
A
ARG
87
0.216
SIDE CHAIN
12
A
ARG
91
0.298
SIDE CHAIN
13
A
ARG
50
0.317
SIDE CHAIN
13
A
ARG
74
0.281
SIDE CHAIN
13
A
ARG
87
0.249
SIDE CHAIN
13
A
ARG
91
0.310
SIDE CHAIN
14
A
ARG
50
0.291
SIDE CHAIN
14
A
ARG
74
0.150
SIDE CHAIN
14
A
ARG
87
0.290
SIDE CHAIN
14
A
ARG
91
0.301
SIDE CHAIN
15
A
ARG
50
0.284
SIDE CHAIN
15
A
ARG
74
0.316
SIDE CHAIN
15
A
ARG
87
0.308
SIDE CHAIN
15
A
ARG
91
0.290
SIDE CHAIN
1
A
CYS
31
63.66
72.21
1
A
ARG
50
-55.06
93.59
1
A
CYS
77
50.12
72.63
2
A
ASP
30
39.81
49.01
2
A
LYS
32
-65.85
-176.18
2
A
ARG
50
-56.80
93.37
2
A
PRO
76
-71.29
-163.84
3
A
GLN
2
-143.02
-64.84
3
A
LYS
32
-55.05
-178.58
3
A
ARG
50
-57.76
91.52
3
A
GLU
95
76.45
37.87
4
A
THR
26
-67.77
-173.11
4
A
CYS
31
60.82
69.91
4
A
ARG
50
-57.99
96.58
5
A
LYS
32
-58.18
-178.91
5
A
ARG
50
-57.87
91.69
5
A
PRO
76
-71.31
-163.52
6
A
ARG
50
-57.67
92.18
7
A
LYS
32
-54.70
-173.50
7
A
ARG
50
-61.32
89.05
8
A
LYS
32
-57.84
-174.06
8
A
ARG
50
-57.08
93.67
8
A
GLU
95
74.70
34.85
9
A
LYS
32
-61.07
-175.36
9
A
ARG
50
-57.93
91.53
9
A
PRO
76
-72.63
-162.22
10
A
LYS
32
-61.61
-166.76
10
A
ARG
50
-54.06
93.23
10
A
ASN
86
-171.33
-178.95
11
A
LYS
32
-55.52
-176.22
11
A
ARG
50
-56.70
93.71
12
A
THR
26
-69.30
-179.91
12
A
LYS
32
-54.74
174.19
12
A
ARG
50
-58.62
95.13
13
A
THR
15
-177.46
144.71
13
A
LYS
32
-67.26
-173.52
13
A
ASP
33
-81.87
-72.70
13
A
ARG
50
-55.67
95.54
14
A
ARG
50
-60.90
89.88
14
A
ILE
53
-133.14
-41.81
14
A
SER
60
-49.60
150.69
14
A
LYS
72
-49.04
156.02
15
A
CYS
31
64.70
75.76
15
A
ARG
50
-55.85
92.48
15
A
CYS
77
44.35
79.47
15
A
GLU
95
73.46
37.79
Solution Structure of Cytotoxic RC-RNase4
1
N
N
A
ASP
3
A
ASP
3
HELX_P
A
HIS
11
A
HIS
11
1
1
9
A
ASP
19
A
ASP
19
HELX_P
A
MET
24
A
MET
24
1
2
6
A
LEU
41
A
LEU
41
HELX_P
A
ARG
50
A
ARG
50
1
3
10
disulf
2.017
A
CYS
20
A
SG
CYS
20
1_555
A
CYS
69
A
SG
CYS
69
1_555
disulf
2.020
A
CYS
31
A
SG
CYS
31
1_555
A
CYS
77
A
SG
CYS
77
1_555
disulf
2.017
A
CYS
49
A
SG
CYS
49
1_555
A
CYS
92
A
SG
CYS
92
1_555
disulf
2.023
A
CYS
89
A
SG
CYS
89
1_555
A
CYS
106
A
SG
CYS
106
1_555
HYDROLASE
antitumor, bullfrog, cytotoxicity, ribonuclease, Structure from MOLMOL, HYDROLASE
Q9DFY6_RANCA
UNP
1
Q9DFY6
CQDWATFKKKHLTDTWDVDCDNLMPTSLFDCKDKNTFIYSLPGPVKALCRGVIFSADVLSNSEFYLAECNVKPRKPCKYK
LKKSSNRICIRCEHELPVHFAGVGICP
23
129
1KVZ
1
107
Q9DFY6
A
1
1
107
1
initiating methionine
MET
1
1KVZ
A
Q9DFY6
UNP
1
2
3
3
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
12
A
LEU
12
A
THR
13
A
THR
13
A
ILE
38
A
ILE
38
A
TYR
39
A
TYR
39
A
LYS
34
A
LYS
34
A
THR
36
A
THR
36
A
PHE
64
A
PHE
64
A
VAL
71
A
VAL
71
A
TYR
79
A
TYR
79
A
ASN
86
A
ASN
86
A
ALA
56
A
ALA
56
A
LEU
59
A
LEU
59
A
ILE
88
A
ILE
88
A
GLU
93
A
GLU
93
A
LEU
96
A
LEU
96
A
VAL
103
A
VAL
103