1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hsu, C.-H. Liao, Y.-D. Chen, L.-W. Wu, S.-H. Chen, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.MOL.BIOL. JMOBAK 0070 0022-2836 326 1189 1201 10.1016/S0022-2836(02)01472-9 12589762 Solution Structure of the Cytotoxic RNase 4 from the Oocytes of Bullfrog Rana Catesbeiana 2003 10.2210/pdb1kvz/pdb pdb_00001kvz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 12236.297 RC-RNase4 1 man polymer no no MQDWATFKKKHLTDTWDVDCDNLMPTSLFDCKDKNTFIYSLPGPVKALCRGVIFSADVLSNSEFYLAECNVKPRKPCKYK LKKSSNRICIRCEHELPVHFAGVGICP MQDWATFKKKHLTDTWDVDCDNLMPTSLFDCKDKNTFIYSLPGPVKALCRGVIFSADVLSNSEFYLAECNVKPRKPCKYK LKKSSNRICIRCEHELPVHFAGVGICP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n bullfrog Rana Escherichia Escherichia coli sample Oocytes 8400 Rana catesbeiana 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid PET-11d database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Database references 1 0 2002-07-28 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 1 4 2022-12-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details RCSB Y PDBJ 2002-01-28 REL REL This structure was determined using standard 3D hetreonuclear techniques. structures with the lowest energy 200 15 3D_13C-separated_NOESY 3D_15N-separated_NOESY HNHA 3.5 1 atm 310 K 3.5 1 atm 310 K simulated annealing 1 closest to the average 1.5mM rRC-RNase4 U-15N, 13C; 50mM phosphate buffer; 90% H2O, 10% 90% H2O/10% D2O 1.5mM rRC-RNase4 U-15N; 50mM phosphate buffer; 90% H2O, 10% 90% H2O/10% D2O Bruker processing XwinNMR 2.6 Bruker data analysis AURELIA 2.6 MSI structure solution X-PLOR 98 MSI refinement X-PLOR 98 600 Bruker AVANCE 500 Bruker AMX MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ASP 3 n 3 ASP 3 A TRP 4 n 4 TRP 4 A ALA 5 n 5 ALA 5 A THR 6 n 6 THR 6 A PHE 7 n 7 PHE 7 A LYS 8 n 8 LYS 8 A LYS 9 n 9 LYS 9 A LYS 10 n 10 LYS 10 A HIS 11 n 11 HIS 11 A LEU 12 n 12 LEU 12 A THR 13 n 13 THR 13 A ASP 14 n 14 ASP 14 A THR 15 n 15 THR 15 A TRP 16 n 16 TRP 16 A ASP 17 n 17 ASP 17 A VAL 18 n 18 VAL 18 A ASP 19 n 19 ASP 19 A CYS 20 n 20 CYS 20 A ASP 21 n 21 ASP 21 A ASN 22 n 22 ASN 22 A LEU 23 n 23 LEU 23 A MET 24 n 24 MET 24 A PRO 25 n 25 PRO 25 A THR 26 n 26 THR 26 A SER 27 n 27 SER 27 A LEU 28 n 28 LEU 28 A PHE 29 n 29 PHE 29 A ASP 30 n 30 ASP 30 A CYS 31 n 31 CYS 31 A LYS 32 n 32 LYS 32 A ASP 33 n 33 ASP 33 A LYS 34 n 34 LYS 34 A ASN 35 n 35 ASN 35 A THR 36 n 36 THR 36 A PHE 37 n 37 PHE 37 A ILE 38 n 38 ILE 38 A TYR 39 n 39 TYR 39 A SER 40 n 40 SER 40 A LEU 41 n 41 LEU 41 A PRO 42 n 42 PRO 42 A GLY 43 n 43 GLY 43 A PRO 44 n 44 PRO 44 A VAL 45 n 45 VAL 45 A LYS 46 n 46 LYS 46 A ALA 47 n 47 ALA 47 A LEU 48 n 48 LEU 48 A CYS 49 n 49 CYS 49 A ARG 50 n 50 ARG 50 A GLY 51 n 51 GLY 51 A VAL 52 n 52 VAL 52 A ILE 53 n 53 ILE 53 A PHE 54 n 54 PHE 54 A SER 55 n 55 SER 55 A ALA 56 n 56 ALA 56 A ASP 57 n 57 ASP 57 A VAL 58 n 58 VAL 58 A LEU 59 n 59 LEU 59 A SER 60 n 60 SER 60 A ASN 61 n 61 ASN 61 A SER 62 n 62 SER 62 A GLU 63 n 63 GLU 63 A PHE 64 n 64 PHE 64 A TYR 65 n 65 TYR 65 A LEU 66 n 66 LEU 66 A ALA 67 n 67 ALA 67 A GLU 68 n 68 GLU 68 A CYS 69 n 69 CYS 69 A ASN 70 n 70 ASN 70 A VAL 71 n 71 VAL 71 A LYS 72 n 72 LYS 72 A PRO 73 n 73 PRO 73 A ARG 74 n 74 ARG 74 A LYS 75 n 75 LYS 75 A PRO 76 n 76 PRO 76 A CYS 77 n 77 CYS 77 A LYS 78 n 78 LYS 78 A TYR 79 n 79 TYR 79 A LYS 80 n 80 LYS 80 A LEU 81 n 81 LEU 81 A LYS 82 n 82 LYS 82 A LYS 83 n 83 LYS 83 A SER 84 n 84 SER 84 A SER 85 n 85 SER 85 A ASN 86 n 86 ASN 86 A ARG 87 n 87 ARG 87 A ILE 88 n 88 ILE 88 A CYS 89 n 89 CYS 89 A ILE 90 n 90 ILE 90 A ARG 91 n 91 ARG 91 A CYS 92 n 92 CYS 92 A GLU 93 n 93 GLU 93 A HIS 94 n 94 HIS 94 A GLU 95 n 95 GLU 95 A LEU 96 n 96 LEU 96 A PRO 97 n 97 PRO 97 A VAL 98 n 98 VAL 98 A HIS 99 n 99 HIS 99 A PHE 100 n 100 PHE 100 A ALA 101 n 101 ALA 101 A GLY 102 n 102 GLY 102 A VAL 103 n 103 VAL 103 A GLY 104 n 104 GLY 104 A ILE 105 n 105 ILE 105 A CYS 106 n 106 CYS 106 A PRO 107 n 107 PRO 107 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 13 A N THR 13 A O ILE 38 A O ILE 38 A N ASN 35 A N ASN 35 A O CYS 69 A O CYS 69 A N LEU 66 A N LEU 66 A O SER 84 A O SER 84 A N ALA 56 A N ALA 56 A O CYS 92 A O CYS 92 A N CYS 89 A N CYS 89 A O GLY 102 A O GLY 102 5 A A O H MET CYS 24 31 1.57 1 A ARG 50 0.287 SIDE CHAIN 1 A ARG 74 0.216 SIDE CHAIN 1 A ARG 87 0.315 SIDE CHAIN 1 A ARG 91 0.283 SIDE CHAIN 2 A ARG 50 0.258 SIDE CHAIN 2 A ARG 74 0.283 SIDE CHAIN 2 A ARG 87 0.317 SIDE CHAIN 2 A ARG 91 0.292 SIDE CHAIN 3 A ARG 50 0.204 SIDE CHAIN 3 A ARG 74 0.291 SIDE CHAIN 3 A ARG 87 0.274 SIDE CHAIN 3 A ARG 91 0.272 SIDE CHAIN 4 A ARG 50 0.226 SIDE CHAIN 4 A ARG 74 0.302 SIDE CHAIN 4 A ARG 87 0.250 SIDE CHAIN 4 A ARG 91 0.234 SIDE CHAIN 5 A ARG 50 0.292 SIDE CHAIN 5 A ARG 74 0.281 SIDE CHAIN 5 A ARG 87 0.195 SIDE CHAIN 5 A ARG 91 0.312 SIDE CHAIN 6 A ARG 50 0.223 SIDE CHAIN 6 A ARG 74 0.317 SIDE CHAIN 6 A ARG 87 0.256 SIDE CHAIN 6 A ARG 91 0.256 SIDE CHAIN 7 A ARG 50 0.316 SIDE CHAIN 7 A ARG 74 0.283 SIDE CHAIN 7 A ARG 87 0.244 SIDE CHAIN 7 A ARG 91 0.223 SIDE CHAIN 8 A ARG 50 0.230 SIDE CHAIN 8 A ARG 74 0.313 SIDE CHAIN 8 A ARG 87 0.213 SIDE CHAIN 8 A ARG 91 0.313 SIDE CHAIN 9 A ARG 50 0.210 SIDE CHAIN 9 A ARG 74 0.281 SIDE CHAIN 9 A ARG 87 0.313 SIDE CHAIN 9 A ARG 91 0.317 SIDE CHAIN 10 A ARG 50 0.307 SIDE CHAIN 10 A ARG 74 0.266 SIDE CHAIN 10 A ARG 87 0.265 SIDE CHAIN 10 A ARG 91 0.249 SIDE CHAIN 11 A ARG 50 0.245 SIDE CHAIN 11 A ARG 74 0.242 SIDE CHAIN 11 A ARG 87 0.263 SIDE CHAIN 11 A ARG 91 0.214 SIDE CHAIN 12 A ARG 50 0.314 SIDE CHAIN 12 A ARG 74 0.272 SIDE CHAIN 12 A ARG 87 0.216 SIDE CHAIN 12 A ARG 91 0.298 SIDE CHAIN 13 A ARG 50 0.317 SIDE CHAIN 13 A ARG 74 0.281 SIDE CHAIN 13 A ARG 87 0.249 SIDE CHAIN 13 A ARG 91 0.310 SIDE CHAIN 14 A ARG 50 0.291 SIDE CHAIN 14 A ARG 74 0.150 SIDE CHAIN 14 A ARG 87 0.290 SIDE CHAIN 14 A ARG 91 0.301 SIDE CHAIN 15 A ARG 50 0.284 SIDE CHAIN 15 A ARG 74 0.316 SIDE CHAIN 15 A ARG 87 0.308 SIDE CHAIN 15 A ARG 91 0.290 SIDE CHAIN 1 A CYS 31 63.66 72.21 1 A ARG 50 -55.06 93.59 1 A CYS 77 50.12 72.63 2 A ASP 30 39.81 49.01 2 A LYS 32 -65.85 -176.18 2 A ARG 50 -56.80 93.37 2 A PRO 76 -71.29 -163.84 3 A GLN 2 -143.02 -64.84 3 A LYS 32 -55.05 -178.58 3 A ARG 50 -57.76 91.52 3 A GLU 95 76.45 37.87 4 A THR 26 -67.77 -173.11 4 A CYS 31 60.82 69.91 4 A ARG 50 -57.99 96.58 5 A LYS 32 -58.18 -178.91 5 A ARG 50 -57.87 91.69 5 A PRO 76 -71.31 -163.52 6 A ARG 50 -57.67 92.18 7 A LYS 32 -54.70 -173.50 7 A ARG 50 -61.32 89.05 8 A LYS 32 -57.84 -174.06 8 A ARG 50 -57.08 93.67 8 A GLU 95 74.70 34.85 9 A LYS 32 -61.07 -175.36 9 A ARG 50 -57.93 91.53 9 A PRO 76 -72.63 -162.22 10 A LYS 32 -61.61 -166.76 10 A ARG 50 -54.06 93.23 10 A ASN 86 -171.33 -178.95 11 A LYS 32 -55.52 -176.22 11 A ARG 50 -56.70 93.71 12 A THR 26 -69.30 -179.91 12 A LYS 32 -54.74 174.19 12 A ARG 50 -58.62 95.13 13 A THR 15 -177.46 144.71 13 A LYS 32 -67.26 -173.52 13 A ASP 33 -81.87 -72.70 13 A ARG 50 -55.67 95.54 14 A ARG 50 -60.90 89.88 14 A ILE 53 -133.14 -41.81 14 A SER 60 -49.60 150.69 14 A LYS 72 -49.04 156.02 15 A CYS 31 64.70 75.76 15 A ARG 50 -55.85 92.48 15 A CYS 77 44.35 79.47 15 A GLU 95 73.46 37.79 Solution Structure of Cytotoxic RC-RNase4 1 N N A ASP 3 A ASP 3 HELX_P A HIS 11 A HIS 11 1 1 9 A ASP 19 A ASP 19 HELX_P A MET 24 A MET 24 1 2 6 A LEU 41 A LEU 41 HELX_P A ARG 50 A ARG 50 1 3 10 disulf 2.017 A CYS 20 A SG CYS 20 1_555 A CYS 69 A SG CYS 69 1_555 disulf 2.020 A CYS 31 A SG CYS 31 1_555 A CYS 77 A SG CYS 77 1_555 disulf 2.017 A CYS 49 A SG CYS 49 1_555 A CYS 92 A SG CYS 92 1_555 disulf 2.023 A CYS 89 A SG CYS 89 1_555 A CYS 106 A SG CYS 106 1_555 HYDROLASE antitumor, bullfrog, cytotoxicity, ribonuclease, Structure from MOLMOL, HYDROLASE Q9DFY6_RANCA UNP 1 Q9DFY6 CQDWATFKKKHLTDTWDVDCDNLMPTSLFDCKDKNTFIYSLPGPVKALCRGVIFSADVLSNSEFYLAECNVKPRKPCKYK LKKSSNRICIRCEHELPVHFAGVGICP 23 129 1KVZ 1 107 Q9DFY6 A 1 1 107 1 initiating methionine MET 1 1KVZ A Q9DFY6 UNP 1 2 3 3 parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 12 A LEU 12 A THR 13 A THR 13 A ILE 38 A ILE 38 A TYR 39 A TYR 39 A LYS 34 A LYS 34 A THR 36 A THR 36 A PHE 64 A PHE 64 A VAL 71 A VAL 71 A TYR 79 A TYR 79 A ASN 86 A ASN 86 A ALA 56 A ALA 56 A LEU 59 A LEU 59 A ILE 88 A ILE 88 A GLU 93 A GLU 93 A LEU 96 A LEU 96 A VAL 103 A VAL 103