0.019470
0.011241
0.000000
0.000000
0.022482
0.000000
0.000000
0.000000
0.007481
0.00000
0.00000
0.00000
Sanchez, J.F.
Hoh, F.
Strub, M.P.
Aumelas, A.
Dumas, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
51.360
51.360
133.677
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
10
1363
1370
10.1016/S0969-2126(02)00859-6
12377122
Structure of the cathelicidin motif of protegrin-3 precursor: structural insights into the activation mechanism of an antimicrobial protein.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
mirrors
CCD
2001-09-16
MARRESEARCH
mirrors
CCD
2001-03-29
MARRESEARCH
mirrors
MAD
M
x-ray
1
mirrors
SINGLE WAVELENGTH
M
x-ray
1
0.9791
1.0
0.9793
1.0
0.9717
1.0
0.9881
1.0
BM14
ESRF
0.9791, 0.9793, 0.9717
SYNCHROTRON
ESRF BEAMLINE BM14
BM30A
ESRF
0.9881
SYNCHROTRON
ESRF BEAMLINE BM30A
11322.741
Protegrin-3 Precursor
RESIDUES 30-130
1
man
polymer
18.015
water
73
nat
water
no
no
QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG
TVTLDQIKDPLDITCNEVQGV
QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG
TVTLDQIKDPLDITCNEVQGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pig
Sus
Escherichia
Escherichia coli
sample
pg3
9823
Sus scrofa
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET15B
1
2.25
40.0
VAPOR DIFFUSION, HANGING DROP
3.8
ammonium sulfate, sodium acetate, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
repository
Initial release
Version format compliance
Version format compliance
1
0
2002-10-09
1
1
2008-04-27
1
2
2011-07-13
RCSB
Y
RCSB
2002-01-29
REL
REL
HOH
water
TIP
300
2
HOH
HOH
300
A
TIP
301
2
HOH
HOH
301
A
TIP
302
2
HOH
HOH
302
A
TIP
303
2
HOH
HOH
303
A
TIP
304
2
HOH
HOH
304
A
TIP
305
2
HOH
HOH
305
A
TIP
306
2
HOH
HOH
306
A
TIP
307
2
HOH
HOH
307
A
TIP
308
2
HOH
HOH
308
A
TIP
309
2
HOH
HOH
309
A
TIP
310
2
HOH
HOH
310
A
TIP
311
2
HOH
HOH
311
A
TIP
312
2
HOH
HOH
312
A
TIP
313
2
HOH
HOH
313
A
TIP
314
2
HOH
HOH
314
A
TIP
315
2
HOH
HOH
315
A
TIP
316
2
HOH
HOH
316
A
TIP
318
2
HOH
HOH
318
A
TIP
319
2
HOH
HOH
319
A
TIP
320
2
HOH
HOH
320
A
TIP
321
2
HOH
HOH
321
A
TIP
322
2
HOH
HOH
322
A
TIP
323
2
HOH
HOH
323
A
TIP
324
2
HOH
HOH
324
A
TIP
325
2
HOH
HOH
325
A
TIP
326
2
HOH
HOH
326
A
TIP
327
2
HOH
HOH
327
A
TIP
328
2
HOH
HOH
328
A
TIP
329
2
HOH
HOH
329
A
TIP
330
2
HOH
HOH
330
A
TIP
331
2
HOH
HOH
331
A
TIP
332
2
HOH
HOH
332
A
TIP
333
2
HOH
HOH
333
A
TIP
334
2
HOH
HOH
334
A
TIP
335
2
HOH
HOH
335
A
TIP
336
2
HOH
HOH
336
A
TIP
337
2
HOH
HOH
337
A
TIP
338
2
HOH
HOH
338
A
TIP
339
2
HOH
HOH
339
A
TIP
340
2
HOH
HOH
340
A
TIP
341
2
HOH
HOH
341
A
TIP
342
2
HOH
HOH
342
A
TIP
344
2
HOH
HOH
344
A
TIP
345
2
HOH
HOH
345
A
TIP
347
2
HOH
HOH
347
A
TIP
348
2
HOH
HOH
348
A
TIP
349
2
HOH
HOH
349
A
TIP
350
2
HOH
HOH
350
A
TIP
351
2
HOH
HOH
351
A
TIP
352
2
HOH
HOH
352
A
TIP
353
2
HOH
HOH
353
A
TIP
354
2
HOH
HOH
354
A
TIP
355
2
HOH
HOH
355
A
TIP
356
2
HOH
HOH
356
A
TIP
357
2
HOH
HOH
357
A
TIP
358
2
HOH
HOH
358
A
TIP
359
2
HOH
HOH
359
A
TIP
360
2
HOH
HOH
360
A
TIP
361
2
HOH
HOH
361
A
TIP
362
2
HOH
HOH
362
A
TIP
363
2
HOH
HOH
363
A
TIP
364
2
HOH
HOH
364
A
TIP
365
2
HOH
HOH
365
A
TIP
366
2
HOH
HOH
366
A
TIP
367
2
HOH
HOH
367
A
TIP
368
2
HOH
HOH
368
A
TIP
369
2
HOH
HOH
369
A
TIP
370
2
HOH
HOH
370
A
TIP
371
2
HOH
HOH
371
A
TIP
372
2
HOH
HOH
372
A
TIP
375
2
HOH
HOH
375
A
TIP
376
2
HOH
HOH
376
A
TIP
377
2
HOH
HOH
377
A
n
1
30
A
ALA
31
n
2
ALA
31
A
LEU
32
n
3
LEU
32
A
SER
33
n
4
SER
33
A
TYR
34
n
5
TYR
34
A
ARG
35
n
6
ARG
35
A
GLU
36
n
7
GLU
36
A
ALA
37
n
8
ALA
37
A
VAL
38
n
9
VAL
38
A
LEU
39
n
10
LEU
39
A
ARG
40
n
11
ARG
40
A
ALA
41
n
12
ALA
41
A
VAL
42
n
13
VAL
42
A
ASP
43
n
14
ASP
43
A
ARG
44
n
15
ARG
44
A
LEU
45
n
16
LEU
45
A
ASN
46
n
17
ASN
46
A
GLU
47
n
18
GLU
47
A
GLN
48
n
19
GLN
48
A
SER
49
n
20
SER
49
A
SER
50
n
21
SER
50
A
GLU
51
n
22
GLU
51
A
ALA
52
n
23
ALA
52
A
ASN
53
n
24
ASN
53
A
LEU
54
n
25
LEU
54
A
TYR
55
n
26
TYR
55
A
ARG
56
n
27
ARG
56
A
LEU
57
n
28
LEU
57
A
LEU
58
n
29
LEU
58
A
GLU
59
n
30
GLU
59
A
LEU
60
n
31
LEU
60
A
ASP
61
n
32
ASP
61
A
n
33
62
A
n
34
63
A
n
35
64
A
n
36
65
A
n
37
66
A
n
38
67
A
n
39
68
A
n
40
69
A
n
41
70
A
GLY
71
n
42
GLY
71
A
THR
72
n
43
THR
72
A
PRO
73
n
44
PRO
73
A
LYS
74
n
45
LYS
74
A
PRO
75
n
46
PRO
75
A
VAL
76
n
47
VAL
76
A
SER
77
n
48
SER
77
A
PHE
78
n
49
PHE
78
A
THR
79
n
50
THR
79
A
VAL
80
n
51
VAL
80
A
LYS
81
n
52
LYS
81
A
GLU
82
n
53
GLU
82
A
THR
83
n
54
THR
83
A
VAL
84
n
55
VAL
84
A
CYS
85
n
56
CYS
85
A
PRO
86
n
57
PRO
86
A
ARG
87
n
58
ARG
87
A
PRO
88
n
59
PRO
88
A
THR
89
n
60
THR
89
A
ARG
90
n
61
ARG
90
A
GLN
91
n
62
GLN
91
A
PRO
92
n
63
PRO
92
A
PRO
93
n
64
PRO
93
A
GLU
94
n
65
GLU
94
A
LEU
95
n
66
LEU
95
A
CYS
96
n
67
CYS
96
A
ASP
97
n
68
ASP
97
A
PHE
98
n
69
PHE
98
A
LYS
99
n
70
LYS
99
A
GLU
100
n
71
GLU
100
A
ASN
101
n
72
ASN
101
A
GLY
102
n
73
GLY
102
A
ARG
103
n
74
ARG
103
A
VAL
104
n
75
VAL
104
A
LYS
105
n
76
LYS
105
A
GLN
106
n
77
GLN
106
A
CYS
107
n
78
CYS
107
A
VAL
108
n
79
VAL
108
A
GLY
109
n
80
GLY
109
A
THR
110
n
81
THR
110
A
VAL
111
n
82
VAL
111
A
THR
112
n
83
THR
112
A
LEU
113
n
84
LEU
113
A
ASP
114
n
85
ASP
114
A
n
86
115
A
n
87
116
A
n
88
117
A
n
89
118
A
PRO
119
n
90
PRO
119
A
LEU
120
n
91
LEU
120
A
ASP
121
n
92
ASP
121
A
ILE
122
n
93
ILE
122
A
THR
123
n
94
THR
123
A
CYS
124
n
95
CYS
124
A
ASN
125
n
96
ASN
125
A
GLU
126
n
97
GLU
126
A
VAL
127
n
98
VAL
127
A
GLN
128
n
99
GLN
128
A
n
100
129
A
n
101
130
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
56
A
N
ARG
27
A
O
LYS
81
A
O
LYS
52
A
N
PHE
78
A
N
PHE
49
A
O
CYS
107
A
O
CYS
78
A
N
THR
110
A
N
THR
81
A
O
ASP
121
A
O
ASP
92
1
A
GLN
30
A
GLN
1
1
Y
1
A
GLN
62
A
GLN
33
1
Y
1
A
PRO
63
A
PRO
34
1
Y
1
A
PRO
64
A
PRO
35
1
Y
1
A
LYS
65
A
LYS
36
1
Y
1
A
ALA
66
A
ALA
37
1
Y
1
A
ASP
67
A
ASP
38
1
Y
1
A
GLU
68
A
GLU
39
1
Y
1
A
ASP
69
A
ASP
40
1
Y
1
A
PRO
70
A
PRO
41
1
Y
1
A
GLN
115
A
GLN
86
1
Y
1
A
ILE
116
A
ILE
87
1
Y
1
A
LYS
117
A
LYS
88
1
Y
1
A
ASP
118
A
ASP
89
1
Y
1
A
GLY
129
A
GLY
100
1
Y
1
A
VAL
130
A
VAL
101
1
Y
1
A
ARG
90
-85.28
46.60
1
A
LEU
113
-58.74
-0.02
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
37.8
2.09
2.65
0.00
2.09
0.00
-4.18
0.291
0.012
0.229
0.248
0.229
2.19
23.97
568
5360
5360
10.6
91.1
RANDOM
1501596.00
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MAD
Engh & Huber
FLAT MODEL
85.8159
0.415484
0.41
0.27
5.00
0.28
0.16
2.19
23.97
73
741
0
0
668
0.012
1.6
24.3
1.04
0.313
0.031
0.231
2.33
99
790
6
11.1
93.8
31.9
2.19
24.0
1KWI
5386
5360
1.0
0.045
0.045
1,2
12.2
7.60
91.1
2.19
2.29
94.3
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
model building
RESOLVE
refinement
CNS
1.0
phasing
RESOLVE
Protegrin-3
Crystal Structure Analysis of the Cathelicidin Motif of Protegrins
1
N
N
2
N
N
A
ALA
31
A
ALA
2
HELX_P
A
SER
49
A
SER
20
1
1
19
A
PRO
92
A
PRO
63
HELX_P
A
CYS
96
A
CYS
67
5
2
5
disulf
2.043
A
CYS
85
A
SG
CYS
56
1_555
A
CYS
96
A
SG
CYS
67
1_555
disulf
2.029
A
CYS
107
A
SG
CYS
78
1_555
A
CYS
124
A
SG
CYS
95
1_555
ANTIMICROBIAL PROTEIN
protegrin, cathelicidin motif, disulfide, MAD, selenocystine, ANTIMICROBIAL PROTEIN
PG3_PIG
UNP
1
30
P32196
QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG
TVTLDQIKDPLDITCNEVQGV
30
130
1KWI
30
130
P32196
A
1
1
101
4
anti-parallel
anti-parallel
anti-parallel
A
ASN
53
A
ASN
24
A
LEU
60
A
LEU
31
A
LYS
74
A
LYS
45
A
PRO
86
A
PRO
57
A
VAL
104
A
VAL
75
A
VAL
111
A
VAL
82
A
ASP
121
A
ASP
92
A
GLU
126
A
GLU
97
179
P 65 2 2