1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Assfalg, M.
Bertini, I.
Turano, P.
Bruschi, M.
Durand, M.C.
Giudici-Orticoni, M.T.
Dolla, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
22
107
122
10.1023/A:1014202405862
11883773
A quick solution structure determination of the fully oxidized double mutant K9-10A cytochrome c7 from Desulfuromonas acetoxidans and mechanistic implications.
2002
10.2210/pdb1kwj/pdb
pdb_00001kwj
CHIRALITY ERROR AT CA CENTER OF ALA A 1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
7164.105
cytochrome c7
K9A, K10A
1
man
polymer
618.503
HEME C
3
syn
non-polymer
Cytochrome c3, Cytochrome c551.5
no
no
ADVVTYENAAGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK
ADVVTYENAAGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Desulfuromonas
Desulfovibrio
sample
891
Desulfuromonas acetoxidans
876
Desulfovibrio desulfuricans
G201
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-02-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1EHJ contains the energy minimized average solution structure of the fully reduced native cytochrome c7 from Desulfuromonas acetoxidans
1F22 contains the 35 solution structures family of the fully reduced native cytochrome c7 from Desulfuromonas acetoxidans
1new contains 18 solution structures of the fully oxidized native cytochrome c7 from Desulfuromonas acetoxidans
2new contains 17 solution structures of the fully oxidized native cytochrome c7 from Desulfuromonas acetoxidans
1HH5 contains the X-ray structure of the fully oxidized native cytochrome c7 from Desulfuromonas acetoxidans
CONTAINS THE RELATED 35 STRUCTURE ENSEMBLE
RCSB
Y
RCSB
2002-01-29
REL
REL
HEC
HEME C
1
2D NOESY
100 mM phosphate
6.5
ambient
298
K
simulated annealing in torsion angle space; restrained energy minimization
2mM cytochrome c7, 100 mM sodium phosphate buffer, pH 6.5
90% H2O/10% D2O
Guentert, P., Wuethrich, K.
structure solution
PSEUDYANA
1.5
Kolman, Case
refinement
Amber
5.0
800
Bruker
AVANCE
HEM
30
2
HEC
HEC
130
A
HEM
53
2
HEC
HEC
153
A
HEM
66
2
HEC
HEC
166
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
VAL
3
n
3
VAL
3
A
VAL
4
n
4
VAL
4
A
THR
5
n
5
THR
5
A
TYR
6
n
6
TYR
6
A
GLU
7
n
7
GLU
7
A
ASN
8
n
8
ASN
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
GLY
11
n
11
GLY
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
THR
14
n
14
THR
14
A
PHE
15
n
15
PHE
15
A
ASP
16
n
16
ASP
16
A
HIS
17
n
17
HIS
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
HIS
20
n
20
HIS
20
A
ALA
21
n
21
ALA
21
A
GLU
22
n
22
GLU
22
A
LYS
23
n
23
LYS
23
A
LEU
24
n
24
LEU
24
A
GLY
25
n
25
GLY
25
A
CYS
26
n
26
CYS
26
A
ASP
27
n
27
ASP
27
A
ALA
28
n
28
ALA
28
A
CYS
29
n
29
CYS
29
A
HIS
30
n
30
HIS
30
A
GLU
31
n
31
GLU
31
A
GLY
32
n
32
GLY
32
A
THR
33
n
33
THR
33
A
PRO
34
n
34
PRO
34
A
ALA
35
n
35
ALA
35
A
LYS
36
n
36
LYS
36
A
ILE
37
n
37
ILE
37
A
ALA
38
n
38
ALA
38
A
ILE
39
n
39
ILE
39
A
ASP
40
n
40
ASP
40
A
LYS
41
n
41
LYS
41
A
LYS
42
n
42
LYS
42
A
SER
43
n
43
SER
43
A
ALA
44
n
44
ALA
44
A
HIS
45
n
45
HIS
45
A
LYS
46
n
46
LYS
46
A
ASP
47
n
47
ASP
47
A
ALA
48
n
48
ALA
48
A
CYS
49
n
49
CYS
49
A
LYS
50
n
50
LYS
50
A
THR
51
n
51
THR
51
A
CYS
52
n
52
CYS
52
A
HIS
53
n
53
HIS
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
ASN
56
n
56
ASN
56
A
ASN
57
n
57
ASN
57
A
GLY
58
n
58
GLY
58
A
PRO
59
n
59
PRO
59
A
THR
60
n
60
THR
60
A
LYS
61
n
61
LYS
61
A
CYS
62
n
62
CYS
62
A
GLY
63
n
63
GLY
63
A
GLY
64
n
64
GLY
64
A
CYS
65
n
65
CYS
65
A
HIS
66
n
66
HIS
66
A
ILE
67
n
67
ILE
67
A
LYS
68
n
68
LYS
68
A
author_defined_assembly
1
monomeric
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
NA
HEC
1_555
91.4
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
NB
HEC
1_555
92.4
A
HEC
130
B
NA
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
NB
HEC
1_555
92.8
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
NC
HEC
1_555
88.4
A
HEC
130
B
NA
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
NC
HEC
1_555
177.6
A
HEC
130
B
NB
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
NC
HEC
1_555
89.6
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
ND
HEC
1_555
87.3
A
HEC
130
B
NA
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
ND
HEC
1_555
88.5
A
HEC
130
B
NB
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
ND
HEC
1_555
178.7
A
HEC
130
B
NC
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HEC
130
B
ND
HEC
1_555
89.1
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
130
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
175.4
A
HEC
130
B
NA
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
92.7
A
HEC
130
B
NB
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
89.6
A
HEC
130
B
NC
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
87.4
A
HEC
130
B
ND
HEC
1_555
A
HEC
130
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
90.7
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
NA
HEC
1_555
91.1
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
NB
HEC
1_555
91.7
A
HEC
153
C
NA
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
NB
HEC
1_555
89.8
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
NC
HEC
1_555
89.5
A
HEC
153
C
NA
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
NC
HEC
1_555
179.1
A
HEC
153
C
NB
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
NC
HEC
1_555
90.8
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
ND
HEC
1_555
87.0
A
HEC
153
C
NA
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
ND
HEC
1_555
90.5
A
HEC
153
C
NB
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
ND
HEC
1_555
178.6
A
HEC
153
C
NC
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HEC
153
C
ND
HEC
1_555
88.9
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
153
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
177.4
A
HEC
153
C
NA
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
90.3
A
HEC
153
C
NB
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
90.5
A
HEC
153
C
NC
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
89.1
A
HEC
153
C
ND
HEC
1_555
A
HEC
153
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
90.8
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
NA
HEC
1_555
91.8
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
NB
HEC
1_555
89.6
A
HEC
166
D
NA
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
NB
HEC
1_555
91.3
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
NC
HEC
1_555
91.2
A
HEC
166
D
NA
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
NC
HEC
1_555
176.9
A
HEC
166
D
NB
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
NC
HEC
1_555
89.0
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
ND
HEC
1_555
89.1
A
HEC
166
D
NA
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
ND
HEC
1_555
90.2
A
HEC
166
D
NB
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
ND
HEC
1_555
178.1
A
HEC
166
D
NC
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HEC
166
D
ND
HEC
1_555
89.6
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
166
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
177.3
A
HEC
166
D
NA
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
88.1
A
HEC
166
D
NB
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
93.0
A
HEC
166
D
NC
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
88.9
A
HEC
166
D
ND
HEC
1_555
A
HEC
166
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
88.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
4
A
N
VAL
4
A
O
PHE
15
A
O
PHE
15
1
A
CA
ALA
1
WRONG HAND
1
A
ASP
2
-82.30
-133.56
1
A
THR
14
63.53
93.29
1
A
LYS
18
-67.02
-75.21
1
A
CYS
26
62.48
-59.51
1
A
GLU
31
-66.35
82.01
1
A
ASP
47
-148.84
-59.40
1
A
CYS
49
67.60
-62.33
1
A
ASN
56
-128.56
-168.67
solution structure determination of the fully oxidized double mutant K9-10A cytochrome c7 from Desulfuromonas acetoxidans, minimized average structure
1
N
N
2
N
N
2
N
N
2
N
N
A
HIS
17
A
HIS
17
HELX_P
A
GLY
25
A
GLY
25
1
1
9
A
CYS
26
A
CYS
26
HELX_P
A
HIS
30
A
HIS
30
5
2
5
A
LYS
42
A
LYS
42
HELX_P
A
ASP
47
A
ASP
47
1
3
6
A
CYS
49
A
CYS
49
HELX_P
A
ASN
56
A
ASN
56
1
4
8
A
LYS
61
A
LYS
61
HELX_P
A
HIS
66
A
HIS
66
1
5
6
covale
1.813
none
A
CYS
26
A
SG
CYS
26
1_555
A
HEC
130
B
CAB
HEC
1_555
covale
1.817
none
A
CYS
29
A
SG
CYS
29
1_555
A
HEC
130
B
CAC
HEC
1_555
covale
1.824
none
A
CYS
49
A
SG
CYS
49
1_555
A
HEC
153
C
CAB
HEC
1_555
covale
1.812
none
A
CYS
52
A
SG
CYS
52
1_555
A
HEC
153
C
CAC
HEC
1_555
covale
1.816
none
A
CYS
62
A
SG
CYS
62
1_555
A
HEC
166
D
CAB
HEC
1_555
covale
1.817
none
A
CYS
65
A
SG
CYS
65
1_555
A
HEC
166
D
CAC
HEC
1_555
metalc
1.975
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
130
B
FE
HEC
1_555
metalc
1.989
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
153
C
FE
HEC
1_555
metalc
1.986
A
HIS
30
A
NE2
HIS
30
1_555
A
HEC
130
B
FE
HEC
1_555
metalc
1.977
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
166
D
FE
HEC
1_555
metalc
2.011
A
HIS
53
A
NE2
HIS
53
1_555
A
HEC
153
C
FE
HEC
1_555
metalc
1.986
A
HIS
66
A
NE2
HIS
66
1_555
A
HEC
166
D
FE
HEC
1_555
OXYGEN STORAGE/TRANSPORT
automatic assignment, cytochrome c7, electron transfer, multiheme cytochromes, NMR solution structure, OXYGEN STORAGE-TRANSPORT COMPLEX
CYC3_DESAC
UNP
1
1
P00137
ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK
1
68
1KWJ
1
68
P00137
A
1
1
68
1
LYS
engineered mutation
ALA
9
1KWJ
A
P00137
UNP
9
9
1
LYS
engineered mutation
ALA
10
1KWJ
A
P00137
UNP
10
10
2
anti-parallel
A
VAL
3
A
VAL
3
A
VAL
4
A
VAL
4
A
PHE
15
A
PHE
15
A
ASP
16
A
ASP
16
BINDING SITE FOR RESIDUE HEC A 130
A
HEC
130
Software
14
BINDING SITE FOR RESIDUE HEC A 153
A
HEC
153
Software
9
BINDING SITE FOR RESIDUE HEC A 166
A
HEC
166
Software
11
A
ALA
1
A
ALA
1
14
1_555
A
TYR
6
A
TYR
6
14
1_555
A
HIS
17
A
HIS
17
14
1_555
A
HIS
20
A
HIS
20
14
1_555
A
ALA
21
A
ALA
21
14
1_555
A
CYS
26
A
CYS
26
14
1_555
A
CYS
29
A
CYS
29
14
1_555
A
HIS
30
A
HIS
30
14
1_555
A
PRO
34
A
PRO
34
14
1_555
A
ALA
35
A
ALA
35
14
1_555
A
LYS
36
A
LYS
36
14
1_555
A
ILE
37
A
ILE
37
14
1_555
A
ILE
39
A
ILE
39
14
1_555
A
HEC
153
C
HEC
14
1_555
A
VAL
13
A
VAL
13
9
1_555
A
PHE
15
A
PHE
15
9
1_555
A
HIS
20
A
HIS
20
9
1_555
A
LYS
23
A
LYS
23
9
1_555
A
ALA
28
A
ALA
28
9
1_555
A
CYS
49
A
CYS
49
9
1_555
A
CYS
52
A
CYS
52
9
1_555
A
HIS
53
A
HIS
53
9
1_555
A
HEC
130
B
HEC
9
1_555
A
ASN
8
A
ASN
8
11
1_555
A
ALA
9
A
ALA
9
11
1_555
A
ALA
10
A
ALA
10
11
1_555
A
ASP
40
A
ASP
40
11
1_555
A
LYS
41
A
LYS
41
11
1_555
A
ALA
44
A
ALA
44
11
1_555
A
HIS
45
A
HIS
45
11
1_555
A
CYS
49
A
CYS
49
11
1_555
A
CYS
62
A
CYS
62
11
1_555
A
CYS
65
A
CYS
65
11
1_555
A
HIS
66
A
HIS
66
11
1_555