0.024915 0.000000 0.000000 0.000000 0.016483 0.000000 0.000000 0.000000 0.013599 0.000000 0.000000 0.000000 Constantinescu, A.-T. Rak, A. Scheidig, A.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 40.137 60.667 73.537 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C10 H17 N6 O13 P3 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N P N 138 N O N 139 N O N 140 N O N 141 N N N 142 R P N 143 N O N 144 N O N 145 N O N 146 S P N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 R C N 156 N O N 157 R C Y 158 N N Y 159 N C Y 160 N N Y 161 N C Y 162 N C N 163 N O Y 164 N N Y 165 N C N 166 N N Y 167 N N Y 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C Y 191 N C Y 192 N N Y 193 N C Y 194 N C Y 195 N N N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N O N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 S C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N S N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N MG N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C N 328 N C N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 R C N 359 N O N 360 N C N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N N Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C N 409 N O N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 N C N 427 N C N 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N sing Y 166 N doub N 167 N sing Y 168 N sing Y 169 N sing Y 170 N doub N 171 N doub Y 172 N sing Y 173 N sing N 174 N sing N 175 N sing Y 176 N doub N 177 N sing N 178 N sing Y 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing Y 191 N sing Y 192 N doub Y 193 N doub N 194 N sing Y 195 N sing N 196 N sing Y 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing Y 299 N doub Y 300 N sing Y 301 N sing N 302 N sing Y 303 N doub N 304 N sing Y 305 N doub N 306 N sing Y 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing Y 368 N doub Y 369 N sing Y 370 N sing N 371 N sing Y 372 N doub Y 373 N sing Y 374 N sing N 375 N sing Y 376 N sing Y 377 N doub N 378 N sing Y 379 N doub N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing UK Structure STRUE6 2005 0969-2126 10 569 579 10.1016/S0969-2126(02)00737-2 11937061 Rab-subfamily-specific regions of Ypt7p are structurally different from other RabGTPases. 2002 10.2210/pdb1ky2/pdb pdb_00001ky2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 MIRROR CCD 2000-11-10 MARRESEARCH MIRROR SINGLE WAVELENGTH M x-ray 1 0.934 1.0 ID14-1 ESRF 0.934 0.934 SYNCHROTRON ESRF BEAMLINE ID14-1 20159.760 GTP-BINDING PROTEIN YPT7P GTPASE DOMAIN 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 1 syn non-polymer 18.015 water 240 nat water GTP-BINDING PROTEIN YPT7 no no MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK NAINVDTAFEEIARSALQQNQA MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK NAINVDTAFEEIARSALQQNQA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia Escherichia coli sample YPT7 4932 Saccharomyces cerevisiae 469008 Escherichia coli BL21(DE3) BL21/DE3 plasmid PET11 1 1.90 44.60 VAPOR DIFFUSION, HANGING DROP 8.5 PEG, TRIS, GppNHp, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2002-06-05 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-10-11 1 4 2023-08-16 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1ek0 is Gppnhp-Bound Ypt51 At 1.48 A Resolution. 1ky3 is GDP-BOUND YPT7P AT 1.35 A RESOLUTION. RCSB Y RCSB 2002-02-02 REL REL MG MAGNESIUM ION GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HOH water 1EK0 PDB experimental model MG 401 2 MG MG 401 A GNP 400 3 GNP GNP 400 A HOH 1001 4 HOH HOH 1001 A HOH 1002 4 HOH HOH 1002 A HOH 1003 4 HOH HOH 1003 A HOH 1004 4 HOH HOH 1004 A HOH 1005 4 HOH HOH 1005 A HOH 1006 4 HOH HOH 1006 A HOH 1007 4 HOH HOH 1007 A HOH 1008 4 HOH HOH 1008 A HOH 1009 4 HOH HOH 1009 A HOH 1010 4 HOH HOH 1010 A HOH 1011 4 HOH HOH 1011 A HOH 1012 4 HOH HOH 1012 A HOH 1013 4 HOH HOH 1013 A HOH 1014 4 HOH HOH 1014 A HOH 1015 4 HOH HOH 1015 A HOH 1016 4 HOH HOH 1016 A HOH 1017 4 HOH HOH 1017 A HOH 1018 4 HOH HOH 1018 A HOH 1019 4 HOH HOH 1019 A HOH 1020 4 HOH HOH 1020 A HOH 1021 4 HOH HOH 1021 A HOH 1022 4 HOH HOH 1022 A HOH 1023 4 HOH HOH 1023 A HOH 1024 4 HOH HOH 1024 A HOH 1025 4 HOH HOH 1025 A HOH 1026 4 HOH HOH 1026 A HOH 1027 4 HOH HOH 1027 A HOH 1028 4 HOH HOH 1028 A HOH 1029 4 HOH HOH 1029 A HOH 1030 4 HOH HOH 1030 A HOH 1031 4 HOH HOH 1031 A HOH 1032 4 HOH HOH 1032 A HOH 1033 4 HOH HOH 1033 A HOH 1034 4 HOH HOH 1034 A HOH 1035 4 HOH HOH 1035 A HOH 1036 4 HOH HOH 1036 A HOH 1037 4 HOH HOH 1037 A HOH 1038 4 HOH HOH 1038 A HOH 1039 4 HOH HOH 1039 A HOH 1040 4 HOH HOH 1040 A HOH 1041 4 HOH HOH 1041 A HOH 1042 4 HOH HOH 1042 A HOH 1043 4 HOH HOH 1043 A HOH 1044 4 HOH HOH 1044 A HOH 1045 4 HOH HOH 1045 A HOH 1046 4 HOH HOH 1046 A HOH 1047 4 HOH HOH 1047 A HOH 1048 4 HOH HOH 1048 A HOH 1049 4 HOH HOH 1049 A HOH 1050 4 HOH HOH 1050 A HOH 1051 4 HOH HOH 1051 A HOH 1052 4 HOH HOH 1052 A HOH 1053 4 HOH HOH 1053 A HOH 1054 4 HOH HOH 1054 A HOH 1055 4 HOH HOH 1055 A HOH 1056 4 HOH HOH 1056 A HOH 1057 4 HOH HOH 1057 A HOH 1058 4 HOH HOH 1058 A HOH 1059 4 HOH HOH 1059 A HOH 1060 4 HOH HOH 1060 A HOH 1061 4 HOH HOH 1061 A HOH 1062 4 HOH HOH 1062 A HOH 1063 4 HOH HOH 1063 A HOH 1064 4 HOH HOH 1064 A HOH 1065 4 HOH HOH 1065 A HOH 1066 4 HOH HOH 1066 A HOH 1067 4 HOH HOH 1067 A HOH 1068 4 HOH HOH 1068 A HOH 1069 4 HOH HOH 1069 A HOH 1070 4 HOH HOH 1070 A HOH 1071 4 HOH HOH 1071 A HOH 1072 4 HOH HOH 1072 A HOH 1073 4 HOH HOH 1073 A HOH 1074 4 HOH HOH 1074 A HOH 1075 4 HOH HOH 1075 A HOH 1076 4 HOH HOH 1076 A HOH 1077 4 HOH HOH 1077 A HOH 1078 4 HOH HOH 1078 A HOH 1079 4 HOH HOH 1079 A HOH 1080 4 HOH HOH 1080 A HOH 1081 4 HOH HOH 1081 A HOH 1082 4 HOH HOH 1082 A HOH 1083 4 HOH HOH 1083 A HOH 1084 4 HOH HOH 1084 A HOH 1085 4 HOH HOH 1085 A HOH 1086 4 HOH HOH 1086 A HOH 1087 4 HOH HOH 1087 A HOH 1088 4 HOH HOH 1088 A HOH 1089 4 HOH HOH 1089 A HOH 1090 4 HOH HOH 1090 A HOH 1091 4 HOH HOH 1091 A HOH 1092 4 HOH HOH 1092 A HOH 1093 4 HOH HOH 1093 A HOH 1094 4 HOH HOH 1094 A HOH 1095 4 HOH HOH 1095 A HOH 1096 4 HOH HOH 1096 A HOH 1097 4 HOH HOH 1097 A HOH 1098 4 HOH HOH 1098 A HOH 1099 4 HOH HOH 1099 A HOH 1100 4 HOH HOH 1100 A HOH 1101 4 HOH HOH 1101 A HOH 1102 4 HOH HOH 1102 A HOH 1103 4 HOH HOH 1103 A HOH 1104 4 HOH HOH 1104 A HOH 1105 4 HOH HOH 1105 A HOH 1106 4 HOH HOH 1106 A HOH 1107 4 HOH HOH 1107 A HOH 1108 4 HOH HOH 1108 A HOH 1109 4 HOH HOH 1109 A HOH 1110 4 HOH HOH 1110 A HOH 1111 4 HOH HOH 1111 A HOH 1112 4 HOH HOH 1112 A HOH 1113 4 HOH HOH 1113 A HOH 1114 4 HOH HOH 1114 A HOH 1115 4 HOH HOH 1115 A HOH 1116 4 HOH HOH 1116 A HOH 1117 4 HOH HOH 1117 A HOH 1118 4 HOH HOH 1118 A HOH 1119 4 HOH HOH 1119 A HOH 1120 4 HOH HOH 1120 A HOH 1121 4 HOH HOH 1121 A HOH 1122 4 HOH HOH 1122 A HOH 1123 4 HOH HOH 1123 A HOH 1124 4 HOH HOH 1124 A HOH 1125 4 HOH HOH 1125 A HOH 1126 4 HOH HOH 1126 A HOH 1127 4 HOH HOH 1127 A HOH 1128 4 HOH HOH 1128 A HOH 1129 4 HOH HOH 1129 A HOH 1130 4 HOH HOH 1130 A HOH 1131 4 HOH HOH 1131 A HOH 1132 4 HOH HOH 1132 A HOH 1133 4 HOH HOH 1133 A HOH 1134 4 HOH HOH 1134 A HOH 1135 4 HOH HOH 1135 A HOH 1136 4 HOH HOH 1136 A HOH 1137 4 HOH HOH 1137 A HOH 1138 4 HOH HOH 1138 A HOH 1139 4 HOH HOH 1139 A HOH 1140 4 HOH HOH 1140 A HOH 1141 4 HOH HOH 1141 A HOH 1142 4 HOH HOH 1142 A HOH 1143 4 HOH HOH 1143 A HOH 1144 4 HOH HOH 1144 A HOH 1145 4 HOH HOH 1145 A HOH 1146 4 HOH HOH 1146 A HOH 1147 4 HOH HOH 1147 A HOH 1148 4 HOH HOH 1148 A HOH 1149 4 HOH HOH 1149 A HOH 1150 4 HOH HOH 1150 A HOH 1151 4 HOH HOH 1151 A HOH 1152 4 HOH HOH 1152 A HOH 1153 4 HOH HOH 1153 A HOH 1154 4 HOH HOH 1154 A HOH 1155 4 HOH HOH 1155 A HOH 1156 4 HOH HOH 1156 A HOH 1157 4 HOH HOH 1157 A HOH 1158 4 HOH HOH 1158 A HOH 1159 4 HOH HOH 1159 A HOH 1160 4 HOH HOH 1160 A HOH 1161 4 HOH HOH 1161 A HOH 1162 4 HOH HOH 1162 A HOH 1163 4 HOH HOH 1163 A HOH 1164 4 HOH HOH 1164 A HOH 1165 4 HOH HOH 1165 A HOH 1166 4 HOH HOH 1166 A HOH 1167 4 HOH HOH 1167 A HOH 1168 4 HOH HOH 1168 A HOH 1169 4 HOH HOH 1169 A HOH 1170 4 HOH HOH 1170 A HOH 1171 4 HOH HOH 1171 A HOH 1172 4 HOH HOH 1172 A HOH 1173 4 HOH HOH 1173 A HOH 1174 4 HOH HOH 1174 A HOH 1175 4 HOH HOH 1175 A HOH 1176 4 HOH HOH 1176 A HOH 1177 4 HOH HOH 1177 A HOH 1178 4 HOH HOH 1178 A HOH 1179 4 HOH HOH 1179 A HOH 1180 4 HOH HOH 1180 A HOH 1181 4 HOH HOH 1181 A HOH 1182 4 HOH HOH 1182 A HOH 1183 4 HOH HOH 1183 A HOH 1184 4 HOH HOH 1184 A HOH 1185 4 HOH HOH 1185 A HOH 1186 4 HOH HOH 1186 A HOH 1187 4 HOH HOH 1187 A HOH 1188 4 HOH HOH 1188 A HOH 1189 4 HOH HOH 1189 A HOH 1190 4 HOH HOH 1190 A HOH 1191 4 HOH HOH 1191 A HOH 1192 4 HOH HOH 1192 A HOH 1193 4 HOH HOH 1193 A HOH 1194 4 HOH HOH 1194 A HOH 1195 4 HOH HOH 1195 A HOH 1196 4 HOH HOH 1196 A HOH 1197 4 HOH HOH 1197 A HOH 1198 4 HOH HOH 1198 A HOH 1199 4 HOH HOH 1199 A HOH 1200 4 HOH HOH 1200 A HOH 1201 4 HOH HOH 1201 A HOH 1202 4 HOH HOH 1202 A HOH 1203 4 HOH HOH 1203 A HOH 1204 4 HOH HOH 1204 A HOH 1205 4 HOH HOH 1205 A HOH 1206 4 HOH HOH 1206 A HOH 1207 4 HOH HOH 1207 A HOH 1208 4 HOH HOH 1208 A HOH 1209 4 HOH HOH 1209 A HOH 1210 4 HOH HOH 1210 A HOH 1211 4 HOH HOH 1211 A HOH 1212 4 HOH HOH 1212 A HOH 1213 4 HOH HOH 1213 A HOH 1214 4 HOH HOH 1214 A HOH 1215 4 HOH HOH 1215 A HOH 1216 4 HOH HOH 1216 A HOH 1217 4 HOH HOH 1217 A HOH 1218 4 HOH HOH 1218 A HOH 1219 4 HOH HOH 1219 A HOH 1220 4 HOH HOH 1220 A HOH 1221 4 HOH HOH 1221 A HOH 1222 4 HOH HOH 1222 A HOH 1223 4 HOH HOH 1223 A HOH 1224 4 HOH HOH 1224 A HOH 1225 4 HOH HOH 1225 A HOH 1226 4 HOH HOH 1226 A HOH 1227 4 HOH HOH 1227 A HOH 1228 4 HOH HOH 1228 A HOH 1229 4 HOH HOH 1229 A HOH 1230 4 HOH HOH 1230 A HOH 1231 4 HOH HOH 1231 A HOH 1232 4 HOH HOH 1232 A HOH 1233 4 HOH HOH 1233 A HOH 1234 4 HOH HOH 1234 A HOH 1235 4 HOH HOH 1235 A HOH 1236 4 HOH HOH 1236 A HOH 1237 4 HOH HOH 1237 A HOH 1238 4 HOH HOH 1238 A HOH 1239 4 HOH HOH 1239 A HOH 1240 4 HOH HOH 1240 A n 1 1 A n 2 2 A SER 3 n 3 SER 3 A ARG 4 n 4 ARG 4 A LYS 5 n 5 LYS 5 A ALA 6 n 6 LYS 6 A ASN 7 n 7 ASN 7 A ILE 8 n 8 ILE 8 A LEU 9 n 9 LEU 9 A LYS 10 n 10 LYS 10 A VAL 11 n 11 VAL 11 A ILE 12 n 12 ILE 12 A ILE 13 n 13 ILE 13 A LEU 14 n 14 LEU 14 A GLY 15 n 15 GLY 15 A ASP 16 n 16 ASP 16 A SER 17 n 17 SER 17 A GLY 18 n 18 GLY 18 A VAL 19 n 19 VAL 19 A GLY 20 n 20 GLY 20 A LYS 21 n 21 LYS 21 A THR 22 n 22 THR 22 A SER 23 n 23 SER 23 A LEU 24 n 24 LEU 24 A MET 25 n 25 MET 25 A HIS 26 n 26 HIS 26 A ARG 27 n 27 ARG 27 A TYR 28 n 28 TYR 28 A VAL 29 n 29 VAL 29 A ASN 30 n 30 ASN 30 A ASP 31 n 31 ASP 31 A LYS 32 n 32 LYS 32 A TYR 33 n 33 TYR 33 A SER 34 n 34 SER 34 A GLN 35 n 35 GLN 35 A GLN 36 n 36 GLN 36 A TYR 37 n 37 TYR 37 A LYS 38 n 38 LYS 38 A ALA 39 n 39 ALA 39 A THR 40 n 40 THR 40 A ILE 41 n 41 ILE 41 A GLY 42 n 42 GLY 42 A ALA 43 n 43 ALA 43 A ASP 44 n 44 ASP 44 A PHE 45 n 45 PHE 45 A LEU 46 n 46 LEU 46 A THR 47 n 47 THR 47 A LYS 48 n 48 LYS 48 A GLU 49 n 49 GLU 49 A VAL 50 n 50 VAL 50 A THR 51 n 51 THR 51 A VAL 52 n 52 VAL 52 A ASP 53 n 53 ASP 53 A GLY 54 n 54 GLY 54 A ASP 55 n 55 ASP 55 A LYS 56 n 56 LYS 56 A VAL 57 n 57 VAL 57 A ALA 58 n 58 ALA 58 A THR 59 n 59 THR 59 A MET 60 n 60 MET 60 A GLN 61 n 61 GLN 61 A VAL 62 n 62 VAL 62 A TRP 63 n 63 TRP 63 A ASP 64 n 64 ASP 64 A THR 65 n 65 THR 65 A ALA 66 n 66 ALA 66 A GLY 67 n 67 GLY 67 A GLN 68 n 68 GLN 68 A GLU 69 n 69 GLU 69 A ARG 70 n 70 ARG 70 A PHE 71 n 71 PHE 71 A GLN 72 n 72 GLN 72 A SER 73 n 73 SER 73 A LEU 74 n 74 LEU 74 A GLY 75 n 75 GLY 75 A VAL 76 n 76 VAL 76 A ALA 77 n 77 ALA 77 A PHE 78 n 78 PHE 78 A TYR 79 n 79 TYR 79 A ARG 80 n 80 ARG 80 A GLY 81 n 81 GLY 81 A ALA 82 n 82 ALA 82 A ASP 83 n 83 ASP 83 A CYS 84 n 84 CYS 84 A CYS 85 n 85 CYS 85 A VAL 86 n 86 VAL 86 A LEU 87 n 87 LEU 87 A VAL 88 n 88 VAL 88 A TYR 89 n 89 TYR 89 A ASP 90 n 90 ASP 90 A VAL 91 n 91 VAL 91 A THR 92 n 92 THR 92 A ASN 93 n 93 ASN 93 A ALA 94 n 94 ALA 94 A SER 95 n 95 SER 95 A SER 96 n 96 SER 96 A PHE 97 n 97 PHE 97 A GLU 98 n 98 GLU 98 A ASN 99 n 99 ASN 99 A ILE 100 n 100 ILE 100 A LYS 101 n 101 LYS 101 A SER 102 n 102 SER 102 A TRP 103 n 103 TRP 103 A ARG 104 n 104 ARG 104 A ASP 105 n 105 ASP 105 A GLU 106 n 106 GLU 106 A PHE 107 n 107 PHE 107 A LEU 108 n 108 LEU 108 A VAL 109 n 109 VAL 109 A HIS 110 n 110 HIS 110 A ALA 111 n 111 ALA 111 A ASN 112 n 112 ASN 112 A VAL 113 n 113 VAL 113 A ASN 114 n 114 ASN 114 A SER 115 n 115 SER 115 A PRO 116 n 116 PRO 116 A GLU 117 n 117 GLU 117 A THR 118 n 118 THR 118 A PHE 119 n 119 PHE 119 A PRO 120 n 120 PRO 120 A PHE 121 n 121 PHE 121 A VAL 122 n 122 VAL 122 A ILE 123 n 123 ILE 123 A LEU 124 n 124 LEU 124 A GLY 125 n 125 GLY 125 A ASN 126 n 126 ASN 126 A LYS 127 n 127 LYS 127 A ILE 128 n 128 ILE 128 A ASP 129 n 129 ASP 129 A ALA 130 n 130 ALA 130 A GLU 131 n 131 GLU 131 A GLU 132 n 132 GLU 132 A SER 133 n 133 SER 133 A LYS 134 n 134 LYS 134 A LYS 135 n 135 LYS 135 A ILE 136 n 136 ILE 136 A VAL 137 n 137 VAL 137 A SER 138 n 138 SER 138 A GLU 139 n 139 GLU 139 A ALA 140 n 140 LYS 140 A SER 141 n 141 SER 141 A ALA 142 n 142 ALA 142 A GLN 143 n 143 GLN 143 A GLU 144 n 144 GLU 144 A LEU 145 n 145 LEU 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A SER 148 n 148 SER 148 A LEU 149 n 149 LEU 149 A GLY 150 n 150 GLY 150 A ASP 151 n 151 ASP 151 A ILE 152 n 152 ILE 152 A PRO 153 n 153 PRO 153 A LEU 154 n 154 LEU 154 A PHE 155 n 155 PHE 155 A LEU 156 n 156 LEU 156 A THR 157 n 157 THR 157 A SER 158 n 158 SER 158 A ALA 159 n 159 ALA 159 A LYS 160 n 160 LYS 160 A ASN 161 n 161 ASN 161 A ALA 162 n 162 ALA 162 A ILE 163 n 163 ILE 163 A ASN 164 n 164 ASN 164 A VAL 165 n 165 VAL 165 A ASP 166 n 166 ASP 166 A THR 167 n 167 THR 167 A ALA 168 n 168 ALA 168 A PHE 169 n 169 PHE 169 A GLU 170 n 170 GLU 170 A GLU 171 n 171 GLU 171 A ILE 172 n 172 ILE 172 A ALA 173 n 173 ALA 173 A ARG 174 n 174 ARG 174 A SER 175 n 175 SER 175 A ALA 176 n 176 ALA 176 A LEU 177 n 177 LEU 177 A GLN 178 n 178 GLN 178 A GLN 179 n 179 GLN 179 A ASN 180 n 180 ASN 180 A GLN 181 n 181 GLN 181 A ALA 182 n 182 ALA 182 A 0.1780000 0.1930000 0.1690000 0.1830000 0.2320000 0.2490000 1579 1876 8.6 8.7 18275 author_defined_assembly 1 monomeric A THR 22 A OG1 THR 22 1_555 A MG 401 B MG MG 1_555 A THR 40 A OG1 THR 40 1_555 82.4 A THR 22 A OG1 THR 22 1_555 A MG 401 B MG MG 1_555 A GNP 400 C O1G GNP 1_555 173.1 A THR 40 A OG1 THR 40 1_555 A MG 401 B MG MG 1_555 A GNP 400 C O1G GNP 1_555 90.7 A THR 22 A OG1 THR 22 1_555 A MG 401 B MG MG 1_555 A GNP 400 C O2B GNP 1_555 92.0 A THR 40 A OG1 THR 40 1_555 A MG 401 B MG MG 1_555 A GNP 400 C O2B GNP 1_555 172.8 A GNP 400 C O1G GNP 1_555 A MG 401 B MG MG 1_555 A GNP 400 C O2B GNP 1_555 94.8 A THR 22 A OG1 THR 22 1_555 A MG 401 B MG MG 1_555 A HOH 1008 D O HOH 1_555 86.3 A THR 40 A OG1 THR 40 1_555 A MG 401 B MG MG 1_555 A HOH 1008 D O HOH 1_555 96.2 A GNP 400 C O1G GNP 1_555 A MG 401 B MG MG 1_555 A HOH 1008 D O HOH 1_555 95.0 A GNP 400 C O2B GNP 1_555 A MG 401 B MG MG 1_555 A HOH 1008 D O HOH 1_555 88.0 A THR 22 A OG1 THR 22 1_555 A MG 401 B MG MG 1_555 A HOH 1009 D O HOH 1_555 86.5 A THR 40 A OG1 THR 40 1_555 A MG 401 B MG MG 1_555 A HOH 1009 D O HOH 1_555 86.4 A GNP 400 C O1G GNP 1_555 A MG 401 B MG MG 1_555 A HOH 1009 D O HOH 1_555 92.6 A GNP 400 C O2B GNP 1_555 A MG 401 B MG MG 1_555 A HOH 1009 D O HOH 1_555 88.6 A HOH 1008 D O HOH 1_555 A MG 401 B MG MG 1_555 A HOH 1009 D O HOH 1_555 171.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PRO 153 A O PRO 153 A N ILE 123 A N ILE 123 A O VAL 122 A O VAL 122 A N CYS 85 A N CYS 85 A O CYS 84 A O CYS 84 A N ILE 12 A N ILE 12 A O LEU 9 A O LEU 9 A N GLN 61 A N GLN 61 A O LYS 56 A O LYS 56 A N VAL 52 A N VAL 52 1 A CG LYS 6 A CG LYS 6 1 Y 1 A CD LYS 6 A CD LYS 6 1 Y 1 A CE LYS 6 A CE LYS 6 1 Y 1 A NZ LYS 6 A NZ LYS 6 1 Y 1 A CG LYS 140 A CG LYS 140 1 Y 1 A CD LYS 140 A CD LYS 140 1 Y 1 A CE LYS 140 A CE LYS 140 1 Y 1 A NZ LYS 140 A NZ LYS 140 1 Y 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 3.62 0.50 120.30 123.92 A A A NE CZ NH1 ARG ARG ARG 174 174 174 N 1 A A O O HOH HOH 1206 1221 2.19 1_555 4_555 1 A LYS 127 73.50 33.86 22.4 0.2492000 0.1832000 0.1926000 0.1926000 1.60 25.00 1876 23450 23450 8.7 96.2 RANDOM 1 isotropic FREE R 0.0 0.0 MOLECULAR REPLACEMENT 1EK0 ENGH AND HUBER MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-22 0.22 0.17 5.00 0.13 0.11 1.60 25.00 240 1703 33 0 1430 0.007 0.023 0.000 0.025 0.039 0.056 0.023 0.000 0.070 0.000 0.2940000 0.017 0.2710000 1.7 304 3504 95.7 20.3 1.6 25.0 1KY2 23450 23450 0.0 0.0 0.1030000 1 8.1 5.15 96.2 1.60 1.70 2.7 3770 0.1800000 2.3 95.7 phasing AMoRE refinement SHELXL-97 data collection MAR345 data scaling XDS GPPNHP-BOUND YPT7P AT 1.6 A RESOLUTION 1 N N 2 N N 3 N N 4 N N A LYS 21 A LYS 21 HELX_P A ASN 30 A ASN 30 1 1 10 A ALA 94 A ALA 94 HELX_P A GLU 98 A GLU 98 1 2 5 A ILE 100 A ILE 100 HELX_P A HIS 110 A HIS 110 1 3 11 A GLU 139 A GLU 139 HELX_P A SER 148 A SER 148 1 4 10 A VAL 165 A VAL 165 HELX_P A GLN 181 A GLN 181 1 5 17 metalc 2.134 A THR 22 A OG1 THR 22 1_555 A MG 401 B MG MG 1_555 metalc 2.152 A THR 40 A OG1 THR 40 1_555 A MG 401 B MG MG 1_555 metalc 2.018 A GNP 400 C O1G GNP 1_555 A MG 401 B MG MG 1_555 metalc 2.066 A GNP 400 C O2B GNP 1_555 A MG 401 B MG MG 1_555 metalc 2.081 A MG 401 B MG MG 1_555 A HOH 1008 D O HOH 1_555 metalc 2.184 A MG 401 B MG MG 1_555 A HOH 1009 D O HOH 1_555 ENDOCYTOSIS/EXOCYTOSIS G PROTEIN, VESICULAR TRAFFIC, GTP HYDROLYSIS, YPT/RAB PROTEIN, ENDOCYTOSIS, HYDROLASE, ENDOCYTOSIS-EXOCYTOSIS COMPLEX YPT7_YEAST UNP 1 1 P32939 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK NAINVDTAFEEIARSALQQNQA 1 182 1KY2 1 182 P32939 A 1 1 182 6 parallel parallel parallel parallel anti-parallel A PRO 153 A PRO 153 A THR 157 A THR 157 A PHE 121 A PHE 121 A ASN 126 A ASN 126 A CYS 84 A CYS 84 A ASP 90 A ASP 90 A LEU 9 A LEU 9 A GLY 15 A GLY 15 A LYS 56 A LYS 56 A THR 65 A THR 65 A ALA 43 A ALA 43 A VAL 52 A VAL 52 BINDING SITE FOR RESIDUE MG A 401 A MG 401 Software 5 BINDING SITE FOR RESIDUE GNP A 400 A GNP 400 Software 28 A THR 22 A THR 22 5 1_555 A THR 40 A THR 40 5 1_555 A GNP 400 C GNP 5 1_555 A HOH 1008 D HOH 5 1_555 A HOH 1009 D HOH 5 1_555 A SER 17 A SER 17 28 1_555 A GLY 18 A GLY 18 28 1_555 A VAL 19 A VAL 19 28 1_555 A GLY 20 A GLY 20 28 1_555 A LYS 21 A LYS 21 28 1_555 A THR 22 A THR 22 28 1_555 A SER 23 A SER 23 28 1_555 A TYR 33 A TYR 33 28 1_555 A GLN 35 A GLN 35 28 1_555 A THR 40 A THR 40 28 1_555 A GLY 67 A GLY 67 28 1_555 A ASN 126 A ASN 126 28 1_555 A LYS 127 A LYS 127 28 1_555 A ASP 129 A ASP 129 28 1_555 A SER 158 A SER 158 28 1_555 A ALA 159 A ALA 159 28 1_555 A LYS 160 A LYS 160 28 1_555 A MG 401 B MG 28 1_555 A HOH 1006 D HOH 28 1_555 A HOH 1007 D HOH 28 1_555 A HOH 1008 D HOH 28 1_555 A HOH 1009 D HOH 28 1_555 A HOH 1010 D HOH 28 1_555 A HOH 1014 D HOH 28 1_555 A HOH 1017 D HOH 28 1_555 A HOH 1018 D HOH 28 1_555 A HOH 1070 D HOH 28 1_555 A HOH 1227 D HOH 28 1_555 19 P 21 21 21