0.024915
0.000000
0.000000
0.000000
0.016483
0.000000
0.000000
0.000000
0.013599
0.000000
0.000000
0.000000
Constantinescu, A.-T.
Rak, A.
Scheidig, A.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
40.137
60.667
73.537
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H17 N6 O13 P3
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
P
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
N
N
142
R
P
N
143
N
O
N
144
N
O
N
145
N
O
N
146
S
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
R
C
N
156
N
O
N
157
R
C
Y
158
N
N
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
N
163
N
O
Y
164
N
N
Y
165
N
C
N
166
N
N
Y
167
N
N
Y
168
N
C
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
MG
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
sing
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
Y
169
N
sing
Y
170
N
doub
N
171
N
doub
Y
172
N
sing
Y
173
N
sing
N
174
N
sing
N
175
N
sing
Y
176
N
doub
N
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
Y
299
N
doub
Y
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
UK
Structure
STRUE6
2005
0969-2126
10
569
579
10.1016/S0969-2126(02)00737-2
11937061
Rab-subfamily-specific regions of Ypt7p are structurally different from other RabGTPases.
2002
10.2210/pdb1ky2/pdb
pdb_00001ky2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
MIRROR
CCD
2000-11-10
MARRESEARCH
MIRROR
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-1
ESRF
0.934
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-1
20159.760
GTP-BINDING PROTEIN YPT7P
GTPASE DOMAIN
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
1
syn
non-polymer
18.015
water
240
nat
water
GTP-BINDING PROTEIN YPT7
no
no
MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR
GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK
NAINVDTAFEEIARSALQQNQA
MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR
GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK
NAINVDTAFEEIARSALQQNQA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
Escherichia coli
sample
YPT7
4932
Saccharomyces cerevisiae
469008
Escherichia coli BL21(DE3)
BL21/DE3
plasmid
PET11
1
1.90
44.60
VAPOR DIFFUSION, HANGING DROP
8.5
PEG, TRIS, GppNHp, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-06-05
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2023-08-16
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1ek0 is Gppnhp-Bound Ypt51 At 1.48 A Resolution.
1ky3 is GDP-BOUND YPT7P AT 1.35 A RESOLUTION.
RCSB
Y
RCSB
2002-02-02
REL
REL
MG
MAGNESIUM ION
GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
HOH
water
1EK0
PDB
experimental model
MG
401
2
MG
MG
401
A
GNP
400
3
GNP
GNP
400
A
HOH
1001
4
HOH
HOH
1001
A
HOH
1002
4
HOH
HOH
1002
A
HOH
1003
4
HOH
HOH
1003
A
HOH
1004
4
HOH
HOH
1004
A
HOH
1005
4
HOH
HOH
1005
A
HOH
1006
4
HOH
HOH
1006
A
HOH
1007
4
HOH
HOH
1007
A
HOH
1008
4
HOH
HOH
1008
A
HOH
1009
4
HOH
HOH
1009
A
HOH
1010
4
HOH
HOH
1010
A
HOH
1011
4
HOH
HOH
1011
A
HOH
1012
4
HOH
HOH
1012
A
HOH
1013
4
HOH
HOH
1013
A
HOH
1014
4
HOH
HOH
1014
A
HOH
1015
4
HOH
HOH
1015
A
HOH
1016
4
HOH
HOH
1016
A
HOH
1017
4
HOH
HOH
1017
A
HOH
1018
4
HOH
HOH
1018
A
HOH
1019
4
HOH
HOH
1019
A
HOH
1020
4
HOH
HOH
1020
A
HOH
1021
4
HOH
HOH
1021
A
HOH
1022
4
HOH
HOH
1022
A
HOH
1023
4
HOH
HOH
1023
A
HOH
1024
4
HOH
HOH
1024
A
HOH
1025
4
HOH
HOH
1025
A
HOH
1026
4
HOH
HOH
1026
A
HOH
1027
4
HOH
HOH
1027
A
HOH
1028
4
HOH
HOH
1028
A
HOH
1029
4
HOH
HOH
1029
A
HOH
1030
4
HOH
HOH
1030
A
HOH
1031
4
HOH
HOH
1031
A
HOH
1032
4
HOH
HOH
1032
A
HOH
1033
4
HOH
HOH
1033
A
HOH
1034
4
HOH
HOH
1034
A
HOH
1035
4
HOH
HOH
1035
A
HOH
1036
4
HOH
HOH
1036
A
HOH
1037
4
HOH
HOH
1037
A
HOH
1038
4
HOH
HOH
1038
A
HOH
1039
4
HOH
HOH
1039
A
HOH
1040
4
HOH
HOH
1040
A
HOH
1041
4
HOH
HOH
1041
A
HOH
1042
4
HOH
HOH
1042
A
HOH
1043
4
HOH
HOH
1043
A
HOH
1044
4
HOH
HOH
1044
A
HOH
1045
4
HOH
HOH
1045
A
HOH
1046
4
HOH
HOH
1046
A
HOH
1047
4
HOH
HOH
1047
A
HOH
1048
4
HOH
HOH
1048
A
HOH
1049
4
HOH
HOH
1049
A
HOH
1050
4
HOH
HOH
1050
A
HOH
1051
4
HOH
HOH
1051
A
HOH
1052
4
HOH
HOH
1052
A
HOH
1053
4
HOH
HOH
1053
A
HOH
1054
4
HOH
HOH
1054
A
HOH
1055
4
HOH
HOH
1055
A
HOH
1056
4
HOH
HOH
1056
A
HOH
1057
4
HOH
HOH
1057
A
HOH
1058
4
HOH
HOH
1058
A
HOH
1059
4
HOH
HOH
1059
A
HOH
1060
4
HOH
HOH
1060
A
HOH
1061
4
HOH
HOH
1061
A
HOH
1062
4
HOH
HOH
1062
A
HOH
1063
4
HOH
HOH
1063
A
HOH
1064
4
HOH
HOH
1064
A
HOH
1065
4
HOH
HOH
1065
A
HOH
1066
4
HOH
HOH
1066
A
HOH
1067
4
HOH
HOH
1067
A
HOH
1068
4
HOH
HOH
1068
A
HOH
1069
4
HOH
HOH
1069
A
HOH
1070
4
HOH
HOH
1070
A
HOH
1071
4
HOH
HOH
1071
A
HOH
1072
4
HOH
HOH
1072
A
HOH
1073
4
HOH
HOH
1073
A
HOH
1074
4
HOH
HOH
1074
A
HOH
1075
4
HOH
HOH
1075
A
HOH
1076
4
HOH
HOH
1076
A
HOH
1077
4
HOH
HOH
1077
A
HOH
1078
4
HOH
HOH
1078
A
HOH
1079
4
HOH
HOH
1079
A
HOH
1080
4
HOH
HOH
1080
A
HOH
1081
4
HOH
HOH
1081
A
HOH
1082
4
HOH
HOH
1082
A
HOH
1083
4
HOH
HOH
1083
A
HOH
1084
4
HOH
HOH
1084
A
HOH
1085
4
HOH
HOH
1085
A
HOH
1086
4
HOH
HOH
1086
A
HOH
1087
4
HOH
HOH
1087
A
HOH
1088
4
HOH
HOH
1088
A
HOH
1089
4
HOH
HOH
1089
A
HOH
1090
4
HOH
HOH
1090
A
HOH
1091
4
HOH
HOH
1091
A
HOH
1092
4
HOH
HOH
1092
A
HOH
1093
4
HOH
HOH
1093
A
HOH
1094
4
HOH
HOH
1094
A
HOH
1095
4
HOH
HOH
1095
A
HOH
1096
4
HOH
HOH
1096
A
HOH
1097
4
HOH
HOH
1097
A
HOH
1098
4
HOH
HOH
1098
A
HOH
1099
4
HOH
HOH
1099
A
HOH
1100
4
HOH
HOH
1100
A
HOH
1101
4
HOH
HOH
1101
A
HOH
1102
4
HOH
HOH
1102
A
HOH
1103
4
HOH
HOH
1103
A
HOH
1104
4
HOH
HOH
1104
A
HOH
1105
4
HOH
HOH
1105
A
HOH
1106
4
HOH
HOH
1106
A
HOH
1107
4
HOH
HOH
1107
A
HOH
1108
4
HOH
HOH
1108
A
HOH
1109
4
HOH
HOH
1109
A
HOH
1110
4
HOH
HOH
1110
A
HOH
1111
4
HOH
HOH
1111
A
HOH
1112
4
HOH
HOH
1112
A
HOH
1113
4
HOH
HOH
1113
A
HOH
1114
4
HOH
HOH
1114
A
HOH
1115
4
HOH
HOH
1115
A
HOH
1116
4
HOH
HOH
1116
A
HOH
1117
4
HOH
HOH
1117
A
HOH
1118
4
HOH
HOH
1118
A
HOH
1119
4
HOH
HOH
1119
A
HOH
1120
4
HOH
HOH
1120
A
HOH
1121
4
HOH
HOH
1121
A
HOH
1122
4
HOH
HOH
1122
A
HOH
1123
4
HOH
HOH
1123
A
HOH
1124
4
HOH
HOH
1124
A
HOH
1125
4
HOH
HOH
1125
A
HOH
1126
4
HOH
HOH
1126
A
HOH
1127
4
HOH
HOH
1127
A
HOH
1128
4
HOH
HOH
1128
A
HOH
1129
4
HOH
HOH
1129
A
HOH
1130
4
HOH
HOH
1130
A
HOH
1131
4
HOH
HOH
1131
A
HOH
1132
4
HOH
HOH
1132
A
HOH
1133
4
HOH
HOH
1133
A
HOH
1134
4
HOH
HOH
1134
A
HOH
1135
4
HOH
HOH
1135
A
HOH
1136
4
HOH
HOH
1136
A
HOH
1137
4
HOH
HOH
1137
A
HOH
1138
4
HOH
HOH
1138
A
HOH
1139
4
HOH
HOH
1139
A
HOH
1140
4
HOH
HOH
1140
A
HOH
1141
4
HOH
HOH
1141
A
HOH
1142
4
HOH
HOH
1142
A
HOH
1143
4
HOH
HOH
1143
A
HOH
1144
4
HOH
HOH
1144
A
HOH
1145
4
HOH
HOH
1145
A
HOH
1146
4
HOH
HOH
1146
A
HOH
1147
4
HOH
HOH
1147
A
HOH
1148
4
HOH
HOH
1148
A
HOH
1149
4
HOH
HOH
1149
A
HOH
1150
4
HOH
HOH
1150
A
HOH
1151
4
HOH
HOH
1151
A
HOH
1152
4
HOH
HOH
1152
A
HOH
1153
4
HOH
HOH
1153
A
HOH
1154
4
HOH
HOH
1154
A
HOH
1155
4
HOH
HOH
1155
A
HOH
1156
4
HOH
HOH
1156
A
HOH
1157
4
HOH
HOH
1157
A
HOH
1158
4
HOH
HOH
1158
A
HOH
1159
4
HOH
HOH
1159
A
HOH
1160
4
HOH
HOH
1160
A
HOH
1161
4
HOH
HOH
1161
A
HOH
1162
4
HOH
HOH
1162
A
HOH
1163
4
HOH
HOH
1163
A
HOH
1164
4
HOH
HOH
1164
A
HOH
1165
4
HOH
HOH
1165
A
HOH
1166
4
HOH
HOH
1166
A
HOH
1167
4
HOH
HOH
1167
A
HOH
1168
4
HOH
HOH
1168
A
HOH
1169
4
HOH
HOH
1169
A
HOH
1170
4
HOH
HOH
1170
A
HOH
1171
4
HOH
HOH
1171
A
HOH
1172
4
HOH
HOH
1172
A
HOH
1173
4
HOH
HOH
1173
A
HOH
1174
4
HOH
HOH
1174
A
HOH
1175
4
HOH
HOH
1175
A
HOH
1176
4
HOH
HOH
1176
A
HOH
1177
4
HOH
HOH
1177
A
HOH
1178
4
HOH
HOH
1178
A
HOH
1179
4
HOH
HOH
1179
A
HOH
1180
4
HOH
HOH
1180
A
HOH
1181
4
HOH
HOH
1181
A
HOH
1182
4
HOH
HOH
1182
A
HOH
1183
4
HOH
HOH
1183
A
HOH
1184
4
HOH
HOH
1184
A
HOH
1185
4
HOH
HOH
1185
A
HOH
1186
4
HOH
HOH
1186
A
HOH
1187
4
HOH
HOH
1187
A
HOH
1188
4
HOH
HOH
1188
A
HOH
1189
4
HOH
HOH
1189
A
HOH
1190
4
HOH
HOH
1190
A
HOH
1191
4
HOH
HOH
1191
A
HOH
1192
4
HOH
HOH
1192
A
HOH
1193
4
HOH
HOH
1193
A
HOH
1194
4
HOH
HOH
1194
A
HOH
1195
4
HOH
HOH
1195
A
HOH
1196
4
HOH
HOH
1196
A
HOH
1197
4
HOH
HOH
1197
A
HOH
1198
4
HOH
HOH
1198
A
HOH
1199
4
HOH
HOH
1199
A
HOH
1200
4
HOH
HOH
1200
A
HOH
1201
4
HOH
HOH
1201
A
HOH
1202
4
HOH
HOH
1202
A
HOH
1203
4
HOH
HOH
1203
A
HOH
1204
4
HOH
HOH
1204
A
HOH
1205
4
HOH
HOH
1205
A
HOH
1206
4
HOH
HOH
1206
A
HOH
1207
4
HOH
HOH
1207
A
HOH
1208
4
HOH
HOH
1208
A
HOH
1209
4
HOH
HOH
1209
A
HOH
1210
4
HOH
HOH
1210
A
HOH
1211
4
HOH
HOH
1211
A
HOH
1212
4
HOH
HOH
1212
A
HOH
1213
4
HOH
HOH
1213
A
HOH
1214
4
HOH
HOH
1214
A
HOH
1215
4
HOH
HOH
1215
A
HOH
1216
4
HOH
HOH
1216
A
HOH
1217
4
HOH
HOH
1217
A
HOH
1218
4
HOH
HOH
1218
A
HOH
1219
4
HOH
HOH
1219
A
HOH
1220
4
HOH
HOH
1220
A
HOH
1221
4
HOH
HOH
1221
A
HOH
1222
4
HOH
HOH
1222
A
HOH
1223
4
HOH
HOH
1223
A
HOH
1224
4
HOH
HOH
1224
A
HOH
1225
4
HOH
HOH
1225
A
HOH
1226
4
HOH
HOH
1226
A
HOH
1227
4
HOH
HOH
1227
A
HOH
1228
4
HOH
HOH
1228
A
HOH
1229
4
HOH
HOH
1229
A
HOH
1230
4
HOH
HOH
1230
A
HOH
1231
4
HOH
HOH
1231
A
HOH
1232
4
HOH
HOH
1232
A
HOH
1233
4
HOH
HOH
1233
A
HOH
1234
4
HOH
HOH
1234
A
HOH
1235
4
HOH
HOH
1235
A
HOH
1236
4
HOH
HOH
1236
A
HOH
1237
4
HOH
HOH
1237
A
HOH
1238
4
HOH
HOH
1238
A
HOH
1239
4
HOH
HOH
1239
A
HOH
1240
4
HOH
HOH
1240
A
n
1
1
A
n
2
2
A
SER
3
n
3
SER
3
A
ARG
4
n
4
ARG
4
A
LYS
5
n
5
LYS
5
A
ALA
6
n
6
LYS
6
A
ASN
7
n
7
ASN
7
A
ILE
8
n
8
ILE
8
A
LEU
9
n
9
LEU
9
A
LYS
10
n
10
LYS
10
A
VAL
11
n
11
VAL
11
A
ILE
12
n
12
ILE
12
A
ILE
13
n
13
ILE
13
A
LEU
14
n
14
LEU
14
A
GLY
15
n
15
GLY
15
A
ASP
16
n
16
ASP
16
A
SER
17
n
17
SER
17
A
GLY
18
n
18
GLY
18
A
VAL
19
n
19
VAL
19
A
GLY
20
n
20
GLY
20
A
LYS
21
n
21
LYS
21
A
THR
22
n
22
THR
22
A
SER
23
n
23
SER
23
A
LEU
24
n
24
LEU
24
A
MET
25
n
25
MET
25
A
HIS
26
n
26
HIS
26
A
ARG
27
n
27
ARG
27
A
TYR
28
n
28
TYR
28
A
VAL
29
n
29
VAL
29
A
ASN
30
n
30
ASN
30
A
ASP
31
n
31
ASP
31
A
LYS
32
n
32
LYS
32
A
TYR
33
n
33
TYR
33
A
SER
34
n
34
SER
34
A
GLN
35
n
35
GLN
35
A
GLN
36
n
36
GLN
36
A
TYR
37
n
37
TYR
37
A
LYS
38
n
38
LYS
38
A
ALA
39
n
39
ALA
39
A
THR
40
n
40
THR
40
A
ILE
41
n
41
ILE
41
A
GLY
42
n
42
GLY
42
A
ALA
43
n
43
ALA
43
A
ASP
44
n
44
ASP
44
A
PHE
45
n
45
PHE
45
A
LEU
46
n
46
LEU
46
A
THR
47
n
47
THR
47
A
LYS
48
n
48
LYS
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
VAL
52
n
52
VAL
52
A
ASP
53
n
53
ASP
53
A
GLY
54
n
54
GLY
54
A
ASP
55
n
55
ASP
55
A
LYS
56
n
56
LYS
56
A
VAL
57
n
57
VAL
57
A
ALA
58
n
58
ALA
58
A
THR
59
n
59
THR
59
A
MET
60
n
60
MET
60
A
GLN
61
n
61
GLN
61
A
VAL
62
n
62
VAL
62
A
TRP
63
n
63
TRP
63
A
ASP
64
n
64
ASP
64
A
THR
65
n
65
THR
65
A
ALA
66
n
66
ALA
66
A
GLY
67
n
67
GLY
67
A
GLN
68
n
68
GLN
68
A
GLU
69
n
69
GLU
69
A
ARG
70
n
70
ARG
70
A
PHE
71
n
71
PHE
71
A
GLN
72
n
72
GLN
72
A
SER
73
n
73
SER
73
A
LEU
74
n
74
LEU
74
A
GLY
75
n
75
GLY
75
A
VAL
76
n
76
VAL
76
A
ALA
77
n
77
ALA
77
A
PHE
78
n
78
PHE
78
A
TYR
79
n
79
TYR
79
A
ARG
80
n
80
ARG
80
A
GLY
81
n
81
GLY
81
A
ALA
82
n
82
ALA
82
A
ASP
83
n
83
ASP
83
A
CYS
84
n
84
CYS
84
A
CYS
85
n
85
CYS
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
VAL
88
n
88
VAL
88
A
TYR
89
n
89
TYR
89
A
ASP
90
n
90
ASP
90
A
VAL
91
n
91
VAL
91
A
THR
92
n
92
THR
92
A
ASN
93
n
93
ASN
93
A
ALA
94
n
94
ALA
94
A
SER
95
n
95
SER
95
A
SER
96
n
96
SER
96
A
PHE
97
n
97
PHE
97
A
GLU
98
n
98
GLU
98
A
ASN
99
n
99
ASN
99
A
ILE
100
n
100
ILE
100
A
LYS
101
n
101
LYS
101
A
SER
102
n
102
SER
102
A
TRP
103
n
103
TRP
103
A
ARG
104
n
104
ARG
104
A
ASP
105
n
105
ASP
105
A
GLU
106
n
106
GLU
106
A
PHE
107
n
107
PHE
107
A
LEU
108
n
108
LEU
108
A
VAL
109
n
109
VAL
109
A
HIS
110
n
110
HIS
110
A
ALA
111
n
111
ALA
111
A
ASN
112
n
112
ASN
112
A
VAL
113
n
113
VAL
113
A
ASN
114
n
114
ASN
114
A
SER
115
n
115
SER
115
A
PRO
116
n
116
PRO
116
A
GLU
117
n
117
GLU
117
A
THR
118
n
118
THR
118
A
PHE
119
n
119
PHE
119
A
PRO
120
n
120
PRO
120
A
PHE
121
n
121
PHE
121
A
VAL
122
n
122
VAL
122
A
ILE
123
n
123
ILE
123
A
LEU
124
n
124
LEU
124
A
GLY
125
n
125
GLY
125
A
ASN
126
n
126
ASN
126
A
LYS
127
n
127
LYS
127
A
ILE
128
n
128
ILE
128
A
ASP
129
n
129
ASP
129
A
ALA
130
n
130
ALA
130
A
GLU
131
n
131
GLU
131
A
GLU
132
n
132
GLU
132
A
SER
133
n
133
SER
133
A
LYS
134
n
134
LYS
134
A
LYS
135
n
135
LYS
135
A
ILE
136
n
136
ILE
136
A
VAL
137
n
137
VAL
137
A
SER
138
n
138
SER
138
A
GLU
139
n
139
GLU
139
A
ALA
140
n
140
LYS
140
A
SER
141
n
141
SER
141
A
ALA
142
n
142
ALA
142
A
GLN
143
n
143
GLN
143
A
GLU
144
n
144
GLU
144
A
LEU
145
n
145
LEU
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
SER
148
n
148
SER
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
ASP
151
n
151
ASP
151
A
ILE
152
n
152
ILE
152
A
PRO
153
n
153
PRO
153
A
LEU
154
n
154
LEU
154
A
PHE
155
n
155
PHE
155
A
LEU
156
n
156
LEU
156
A
THR
157
n
157
THR
157
A
SER
158
n
158
SER
158
A
ALA
159
n
159
ALA
159
A
LYS
160
n
160
LYS
160
A
ASN
161
n
161
ASN
161
A
ALA
162
n
162
ALA
162
A
ILE
163
n
163
ILE
163
A
ASN
164
n
164
ASN
164
A
VAL
165
n
165
VAL
165
A
ASP
166
n
166
ASP
166
A
THR
167
n
167
THR
167
A
ALA
168
n
168
ALA
168
A
PHE
169
n
169
PHE
169
A
GLU
170
n
170
GLU
170
A
GLU
171
n
171
GLU
171
A
ILE
172
n
172
ILE
172
A
ALA
173
n
173
ALA
173
A
ARG
174
n
174
ARG
174
A
SER
175
n
175
SER
175
A
ALA
176
n
176
ALA
176
A
LEU
177
n
177
LEU
177
A
GLN
178
n
178
GLN
178
A
GLN
179
n
179
GLN
179
A
ASN
180
n
180
ASN
180
A
GLN
181
n
181
GLN
181
A
ALA
182
n
182
ALA
182
A
0.1780000
0.1930000
0.1690000
0.1830000
0.2320000
0.2490000
1579
1876
8.6
8.7
18275
author_defined_assembly
1
monomeric
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
THR
40
A
OG1
THR
40
1_555
82.4
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
400
C
O1G
GNP
1_555
173.1
A
THR
40
A
OG1
THR
40
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
400
C
O1G
GNP
1_555
90.7
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
400
C
O2B
GNP
1_555
92.0
A
THR
40
A
OG1
THR
40
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
400
C
O2B
GNP
1_555
172.8
A
GNP
400
C
O1G
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
400
C
O2B
GNP
1_555
94.8
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1008
D
O
HOH
1_555
86.3
A
THR
40
A
OG1
THR
40
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1008
D
O
HOH
1_555
96.2
A
GNP
400
C
O1G
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1008
D
O
HOH
1_555
95.0
A
GNP
400
C
O2B
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1008
D
O
HOH
1_555
88.0
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1009
D
O
HOH
1_555
86.5
A
THR
40
A
OG1
THR
40
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1009
D
O
HOH
1_555
86.4
A
GNP
400
C
O1G
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1009
D
O
HOH
1_555
92.6
A
GNP
400
C
O2B
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1009
D
O
HOH
1_555
88.6
A
HOH
1008
D
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
1009
D
O
HOH
1_555
171.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PRO
153
A
O
PRO
153
A
N
ILE
123
A
N
ILE
123
A
O
VAL
122
A
O
VAL
122
A
N
CYS
85
A
N
CYS
85
A
O
CYS
84
A
O
CYS
84
A
N
ILE
12
A
N
ILE
12
A
O
LEU
9
A
O
LEU
9
A
N
GLN
61
A
N
GLN
61
A
O
LYS
56
A
O
LYS
56
A
N
VAL
52
A
N
VAL
52
1
A
CG
LYS
6
A
CG
LYS
6
1
Y
1
A
CD
LYS
6
A
CD
LYS
6
1
Y
1
A
CE
LYS
6
A
CE
LYS
6
1
Y
1
A
NZ
LYS
6
A
NZ
LYS
6
1
Y
1
A
CG
LYS
140
A
CG
LYS
140
1
Y
1
A
CD
LYS
140
A
CD
LYS
140
1
Y
1
A
CE
LYS
140
A
CE
LYS
140
1
Y
1
A
NZ
LYS
140
A
NZ
LYS
140
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
3.62
0.50
120.30
123.92
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
174
174
174
N
1
A
A
O
O
HOH
HOH
1206
1221
2.19
1_555
4_555
1
A
LYS
127
73.50
33.86
22.4
0.2492000
0.1832000
0.1926000
0.1926000
1.60
25.00
1876
23450
23450
8.7
96.2
RANDOM
1
isotropic
FREE R
0.0
0.0
MOLECULAR REPLACEMENT
1EK0
ENGH AND HUBER
MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-22
0.22
0.17
5.00
0.13
0.11
1.60
25.00
240
1703
33
0
1430
0.007
0.023
0.000
0.025
0.039
0.056
0.023
0.000
0.070
0.000
0.2940000
0.017
0.2710000
1.7
304
3504
95.7
20.3
1.6
25.0
1KY2
23450
23450
0.0
0.0
0.1030000
1
8.1
5.15
96.2
1.60
1.70
2.7
3770
0.1800000
2.3
95.7
phasing
AMoRE
refinement
SHELXL-97
data collection
MAR345
data scaling
XDS
GPPNHP-BOUND YPT7P AT 1.6 A RESOLUTION
1
N
N
2
N
N
3
N
N
4
N
N
A
LYS
21
A
LYS
21
HELX_P
A
ASN
30
A
ASN
30
1
1
10
A
ALA
94
A
ALA
94
HELX_P
A
GLU
98
A
GLU
98
1
2
5
A
ILE
100
A
ILE
100
HELX_P
A
HIS
110
A
HIS
110
1
3
11
A
GLU
139
A
GLU
139
HELX_P
A
SER
148
A
SER
148
1
4
10
A
VAL
165
A
VAL
165
HELX_P
A
GLN
181
A
GLN
181
1
5
17
metalc
2.134
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.152
A
THR
40
A
OG1
THR
40
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.018
A
GNP
400
C
O1G
GNP
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.066
A
GNP
400
C
O2B
GNP
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.081
A
MG
401
B
MG
MG
1_555
A
HOH
1008
D
O
HOH
1_555
metalc
2.184
A
MG
401
B
MG
MG
1_555
A
HOH
1009
D
O
HOH
1_555
ENDOCYTOSIS/EXOCYTOSIS
G PROTEIN, VESICULAR TRAFFIC, GTP HYDROLYSIS, YPT/RAB PROTEIN, ENDOCYTOSIS, HYDROLASE, ENDOCYTOSIS-EXOCYTOSIS COMPLEX
YPT7_YEAST
UNP
1
1
P32939
MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR
GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK
NAINVDTAFEEIARSALQQNQA
1
182
1KY2
1
182
P32939
A
1
1
182
6
parallel
parallel
parallel
parallel
anti-parallel
A
PRO
153
A
PRO
153
A
THR
157
A
THR
157
A
PHE
121
A
PHE
121
A
ASN
126
A
ASN
126
A
CYS
84
A
CYS
84
A
ASP
90
A
ASP
90
A
LEU
9
A
LEU
9
A
GLY
15
A
GLY
15
A
LYS
56
A
LYS
56
A
THR
65
A
THR
65
A
ALA
43
A
ALA
43
A
VAL
52
A
VAL
52
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
5
BINDING SITE FOR RESIDUE GNP A 400
A
GNP
400
Software
28
A
THR
22
A
THR
22
5
1_555
A
THR
40
A
THR
40
5
1_555
A
GNP
400
C
GNP
5
1_555
A
HOH
1008
D
HOH
5
1_555
A
HOH
1009
D
HOH
5
1_555
A
SER
17
A
SER
17
28
1_555
A
GLY
18
A
GLY
18
28
1_555
A
VAL
19
A
VAL
19
28
1_555
A
GLY
20
A
GLY
20
28
1_555
A
LYS
21
A
LYS
21
28
1_555
A
THR
22
A
THR
22
28
1_555
A
SER
23
A
SER
23
28
1_555
A
TYR
33
A
TYR
33
28
1_555
A
GLN
35
A
GLN
35
28
1_555
A
THR
40
A
THR
40
28
1_555
A
GLY
67
A
GLY
67
28
1_555
A
ASN
126
A
ASN
126
28
1_555
A
LYS
127
A
LYS
127
28
1_555
A
ASP
129
A
ASP
129
28
1_555
A
SER
158
A
SER
158
28
1_555
A
ALA
159
A
ALA
159
28
1_555
A
LYS
160
A
LYS
160
28
1_555
A
MG
401
B
MG
28
1_555
A
HOH
1006
D
HOH
28
1_555
A
HOH
1007
D
HOH
28
1_555
A
HOH
1008
D
HOH
28
1_555
A
HOH
1009
D
HOH
28
1_555
A
HOH
1010
D
HOH
28
1_555
A
HOH
1014
D
HOH
28
1_555
A
HOH
1017
D
HOH
28
1_555
A
HOH
1018
D
HOH
28
1_555
A
HOH
1070
D
HOH
28
1_555
A
HOH
1227
D
HOH
28
1_555
19
P 21 21 21