0.020188
0.000000
0.000000
0.000000
0.018041
0.000000
0.000000
0.000000
0.016618
0.000000
0.000000
0.000000
Constantinescu, A.-T.
Rak, A.
Scheidig, A.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
49.535
55.430
60.177
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
P
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
P
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
C
N
98
R
C
N
99
N
O
N
100
S
C
N
101
N
O
N
102
R
C
N
103
N
O
N
104
R
C
Y
105
N
N
Y
106
N
C
Y
107
N
N
Y
108
N
C
N
109
N
C
N
110
N
O
N
111
N
N
N
112
N
C
N
113
N
N
N
114
N
N
Y
115
N
C
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
Y
185
N
C
Y
186
N
N
Y
187
N
C
Y
188
N
C
Y
189
N
N
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
S
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
S
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
MG
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
R
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
N
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
doub
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
Y
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
UK
Structure
STRUE6
2005
0969-2126
10
569
579
10.1016/S0969-2126(02)00737-2
11937061
Rab-subfamily-specific regions of Ypt7p are structurally different from other RabGTPases.
2002
10.2210/pdb1ky3/pdb
pdb_00001ky3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
MIRROR
CCD
2000-11-10
MARRESEARCH
MIRROR
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-1
ESRF
0.934
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-1
20159.760
GTP-BINDING PROTEIN YPT7P
GTPASE DOMAIN
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
172
nat
water
GTP-BINDING PROTEIN YPT7
no
no
MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR
GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK
NAINVDTAFEEIARSALQQNQA
MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR
GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK
NAINVDTAFEEIARSALQQNQA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
Escherichia coli
sample
ypt7
4932
Saccharomyces cerevisiae
469008
Escherichia coli BL21(DE3)
BL21/DE3
plasmid
PET11
1
1.98
39.96
VAPOR DIFFUSION, HANGING DROP
7.0
PEG, HEPES, GDP, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
pdbx_unobs_or_zero_occ_atoms
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Advisory
Refinement description
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-06-05
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2024-02-14
1
5
2024-04-03
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1ky2 is GPPNHP-bound Ypt7p.
RCSB
Y
RCSB
2002-02-02
REL
REL
MG
MAGNESIUM ION
GDP
GUANOSINE-5'-DIPHOSPHATE
HOH
water
YPT7-GPPNHP
Other
experimental model
MG
401
2
MG
MG
401
A
GDP
400
3
GDP
GDP
400
A
HOH
500
4
HOH
HOH
500
A
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
510
4
HOH
HOH
510
A
HOH
511
4
HOH
HOH
511
A
HOH
512
4
HOH
HOH
512
A
HOH
513
4
HOH
HOH
513
A
HOH
514
4
HOH
HOH
514
A
HOH
515
4
HOH
HOH
515
A
HOH
516
4
HOH
HOH
516
A
HOH
517
4
HOH
HOH
517
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
523
4
HOH
HOH
523
A
HOH
524
4
HOH
HOH
524
A
HOH
525
4
HOH
HOH
525
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
528
4
HOH
HOH
528
A
HOH
529
4
HOH
HOH
529
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
534
4
HOH
HOH
534
A
HOH
535
4
HOH
HOH
535
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
546
4
HOH
HOH
546
A
HOH
547
4
HOH
HOH
547
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
551
4
HOH
HOH
551
A
HOH
552
4
HOH
HOH
552
A
HOH
553
4
HOH
HOH
553
A
HOH
554
4
HOH
HOH
554
A
HOH
555
4
HOH
HOH
555
A
HOH
556
4
HOH
HOH
556
A
HOH
557
4
HOH
HOH
557
A
HOH
558
4
HOH
HOH
558
A
HOH
559
4
HOH
HOH
559
A
HOH
560
4
HOH
HOH
560
A
HOH
561
4
HOH
HOH
561
A
HOH
562
4
HOH
HOH
562
A
HOH
563
4
HOH
HOH
563
A
HOH
564
4
HOH
HOH
564
A
HOH
565
4
HOH
HOH
565
A
HOH
566
4
HOH
HOH
566
A
HOH
567
4
HOH
HOH
567
A
HOH
568
4
HOH
HOH
568
A
HOH
569
4
HOH
HOH
569
A
HOH
570
4
HOH
HOH
570
A
HOH
571
4
HOH
HOH
571
A
HOH
572
4
HOH
HOH
572
A
HOH
573
4
HOH
HOH
573
A
HOH
574
4
HOH
HOH
574
A
HOH
575
4
HOH
HOH
575
A
HOH
576
4
HOH
HOH
576
A
HOH
577
4
HOH
HOH
577
A
HOH
578
4
HOH
HOH
578
A
HOH
579
4
HOH
HOH
579
A
HOH
580
4
HOH
HOH
580
A
HOH
581
4
HOH
HOH
581
A
HOH
582
4
HOH
HOH
582
A
HOH
583
4
HOH
HOH
583
A
HOH
584
4
HOH
HOH
584
A
HOH
585
4
HOH
HOH
585
A
HOH
586
4
HOH
HOH
586
A
HOH
587
4
HOH
HOH
587
A
HOH
588
4
HOH
HOH
588
A
HOH
589
4
HOH
HOH
589
A
HOH
590
4
HOH
HOH
590
A
HOH
591
4
HOH
HOH
591
A
HOH
592
4
HOH
HOH
592
A
HOH
593
4
HOH
HOH
593
A
HOH
594
4
HOH
HOH
594
A
HOH
595
4
HOH
HOH
595
A
HOH
596
4
HOH
HOH
596
A
HOH
597
4
HOH
HOH
597
A
HOH
598
4
HOH
HOH
598
A
HOH
599
4
HOH
HOH
599
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
ASN
7
n
7
ASN
7
A
ILE
8
n
8
ILE
8
A
LEU
9
n
9
LEU
9
A
LYS
10
n
10
LYS
10
A
VAL
11
n
11
VAL
11
A
ILE
12
n
12
ILE
12
A
ILE
13
n
13
ILE
13
A
LEU
14
n
14
LEU
14
A
GLY
15
n
15
GLY
15
A
ASP
16
n
16
ASP
16
A
SER
17
n
17
SER
17
A
GLY
18
n
18
GLY
18
A
VAL
19
n
19
VAL
19
A
GLY
20
n
20
GLY
20
A
LYS
21
n
21
LYS
21
A
THR
22
n
22
THR
22
A
SER
23
n
23
SER
23
A
LEU
24
n
24
LEU
24
A
MET
25
n
25
MET
25
A
HIS
26
n
26
HIS
26
A
ARG
27
n
27
ARG
27
A
TYR
28
n
28
TYR
28
A
VAL
29
n
29
VAL
29
A
ASN
30
n
30
ASN
30
A
ASP
31
n
31
ASP
31
A
LYS
32
n
32
LYS
32
A
TYR
33
n
33
TYR
33
A
SER
34
n
34
SER
34
A
GLN
35
n
35
GLN
35
A
GLN
36
n
36
GLN
36
A
TYR
37
n
37
TYR
37
A
n
38
38
A
n
39
39
A
n
40
40
A
ILE
41
n
41
ILE
41
A
GLY
42
n
42
GLY
42
A
ALA
43
n
43
ALA
43
A
ASP
44
n
44
ASP
44
A
PHE
45
n
45
PHE
45
A
LEU
46
n
46
LEU
46
A
THR
47
n
47
THR
47
A
LYS
48
n
48
LYS
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
VAL
52
n
52
VAL
52
A
ASP
53
n
53
ASP
53
A
GLY
54
n
54
GLY
54
A
ASP
55
n
55
ASP
55
A
LYS
56
n
56
LYS
56
A
VAL
57
n
57
VAL
57
A
ALA
58
n
58
ALA
58
A
THR
59
n
59
THR
59
A
MET
60
n
60
MET
60
A
GLN
61
n
61
GLN
61
A
VAL
62
n
62
VAL
62
A
TRP
63
n
63
TRP
63
A
ASP
64
n
64
ASP
64
A
THR
65
n
65
THR
65
A
ALA
66
n
66
ALA
66
A
n
67
67
A
n
68
68
A
n
69
69
A
n
70
70
A
n
71
71
A
n
72
72
A
n
73
73
A
n
74
74
A
n
75
75
A
n
76
76
A
ALA
77
n
77
ALA
77
A
PHE
78
n
78
PHE
78
A
TYR
79
n
79
TYR
79
A
ARG
80
n
80
ARG
80
A
GLY
81
n
81
GLY
81
A
ALA
82
n
82
ALA
82
A
ASP
83
n
83
ASP
83
A
CYS
84
n
84
CYS
84
A
CYS
85
n
85
CYS
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
VAL
88
n
88
VAL
88
A
TYR
89
n
89
TYR
89
A
ASP
90
n
90
ASP
90
A
VAL
91
n
91
VAL
91
A
THR
92
n
92
THR
92
A
ASN
93
n
93
ASN
93
A
ALA
94
n
94
ALA
94
A
SER
95
n
95
SER
95
A
SER
96
n
96
SER
96
A
PHE
97
n
97
PHE
97
A
GLU
98
n
98
GLU
98
A
ASN
99
n
99
ASN
99
A
ILE
100
n
100
ILE
100
A
LYS
101
n
101
LYS
101
A
SER
102
n
102
SER
102
A
TRP
103
n
103
TRP
103
A
ARG
104
n
104
ARG
104
A
ASP
105
n
105
ASP
105
A
GLU
106
n
106
GLU
106
A
PHE
107
n
107
PHE
107
A
LEU
108
n
108
LEU
108
A
VAL
109
n
109
VAL
109
A
HIS
110
n
110
HIS
110
A
ALA
111
n
111
ALA
111
A
ASN
112
n
112
ASN
112
A
VAL
113
n
113
VAL
113
A
ASN
114
n
114
ASN
114
A
SER
115
n
115
SER
115
A
PRO
116
n
116
PRO
116
A
GLU
117
n
117
GLU
117
A
THR
118
n
118
THR
118
A
PHE
119
n
119
PHE
119
A
PRO
120
n
120
PRO
120
A
PHE
121
n
121
PHE
121
A
VAL
122
n
122
VAL
122
A
ILE
123
n
123
ILE
123
A
LEU
124
n
124
LEU
124
A
GLY
125
n
125
GLY
125
A
ASN
126
n
126
ASN
126
A
LYS
127
n
127
LYS
127
A
ILE
128
n
128
ILE
128
A
ASP
129
n
129
ASP
129
A
ALA
130
n
130
ALA
130
A
GLU
131
n
131
GLU
131
A
GLU
132
n
132
GLU
132
A
SER
133
n
133
SER
133
A
LYS
134
n
134
LYS
134
A
LYS
135
n
135
LYS
135
A
ILE
136
n
136
ILE
136
A
VAL
137
n
137
VAL
137
A
SER
138
n
138
SER
138
A
GLU
139
n
139
GLU
139
A
LYS
140
n
140
LYS
140
A
SER
141
n
141
SER
141
A
ALA
142
n
142
ALA
142
A
GLN
143
n
143
GLN
143
A
GLU
144
n
144
GLU
144
A
LEU
145
n
145
LEU
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
SER
148
n
148
SER
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
ASP
151
n
151
ASP
151
A
ILE
152
n
152
ILE
152
A
PRO
153
n
153
PRO
153
A
LEU
154
n
154
LEU
154
A
PHE
155
n
155
PHE
155
A
LEU
156
n
156
LEU
156
A
THR
157
n
157
THR
157
A
SER
158
n
158
SER
158
A
ALA
159
n
159
ALA
159
A
LYS
160
n
160
LYS
160
A
ASN
161
n
161
ASN
161
A
ALA
162
n
162
ALA
162
A
ILE
163
n
163
ILE
163
A
ASN
164
n
164
ASN
164
A
VAL
165
n
165
VAL
165
A
ASP
166
n
166
ASP
166
A
THR
167
n
167
THR
167
A
ALA
168
n
168
ALA
168
A
PHE
169
n
169
PHE
169
A
GLU
170
n
170
GLU
170
A
GLU
171
n
171
GLU
171
A
ILE
172
n
172
ILE
172
A
ALA
173
n
173
ALA
173
A
ARG
174
n
174
ARG
174
A
SER
175
n
175
SER
175
A
ALA
176
n
176
ALA
176
A
LEU
177
n
177
LEU
177
A
GLN
178
n
178
GLN
178
A
GLN
179
n
179
GLN
179
A
ASN
180
n
180
ASN
180
A
GLN
181
n
181
GLN
181
A
n
182
182
A
0.1660000
0.1630000
0.2340000
2413
6.6
author_defined_assembly
1
monomeric
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
GDP
400
C
O3B
GDP
1_555
89.3
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
583
D
O
HOH
1_555
90.1
A
GDP
400
C
O3B
GDP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
583
D
O
HOH
1_555
175.1
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
584
D
O
HOH
1_555
91.8
A
GDP
400
C
O3B
GDP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
584
D
O
HOH
1_555
87.0
A
HOH
583
D
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
584
D
O
HOH
1_555
88.2
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
585
D
O
HOH
1_555
175.8
A
GDP
400
C
O3B
GDP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
585
D
O
HOH
1_555
94.9
A
HOH
583
D
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
585
D
O
HOH
1_555
85.7
A
HOH
584
D
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
585
D
O
HOH
1_555
88.5
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
586
D
O
HOH
1_555
90.4
A
GDP
400
C
O3B
GDP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
586
D
O
HOH
1_555
96.9
A
HOH
583
D
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
586
D
O
HOH
1_555
88.0
A
HOH
584
D
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
586
D
O
HOH
1_555
175.6
A
HOH
585
D
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
586
D
O
HOH
1_555
89.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
50
A
N
VAL
50
A
O
ALA
58
A
O
ALA
58
A
O
GLN
61
A
O
GLN
61
A
N
LEU
9
A
N
LEU
9
A
N
LEU
14
A
N
LEU
14
A
O
VAL
86
A
O
VAL
86
A
N
TYR
89
A
N
TYR
89
A
O
ASN
126
A
O
ASN
126
A
N
GLY
125
A
N
GLY
125
A
O
THR
157
A
O
THR
157
1
A
CB
ASN
7
A
CB
ASN
7
0
Y
1
A
CG
ASN
7
A
CG
ASN
7
0
Y
1
A
OD1
ASN
7
A
OD1
ASN
7
0
Y
1
A
ND2
ASN
7
A
ND2
ASN
7
0
Y
1
A
CB
GLN
35
A
CB
GLN
35
0
Y
1
A
CG
GLN
35
A
CG
GLN
35
0
Y
1
A
CD
GLN
35
A
CD
GLN
35
0
Y
1
A
OE1
GLN
35
A
OE1
GLN
35
0
Y
1
A
NE2
GLN
35
A
NE2
GLN
35
0
Y
1
A
CG
GLN
36
A
CG
GLN
36
0
Y
1
A
CD
GLN
36
A
CD
GLN
36
0
Y
1
A
OE1
GLN
36
A
OE1
GLN
36
0
Y
1
A
NE2
GLN
36
A
NE2
GLN
36
0
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
ARG
4
A
ARG
4
1
Y
1
A
LYS
5
A
LYS
5
1
Y
1
A
LYS
6
A
LYS
6
1
Y
1
A
LYS
38
A
LYS
38
1
Y
1
A
ALA
39
A
ALA
39
1
Y
1
A
THR
40
A
THR
40
1
Y
1
A
GLY
67
A
GLY
67
1
Y
1
A
GLN
68
A
GLN
68
1
Y
1
A
GLU
69
A
GLU
69
1
Y
1
A
ARG
70
A
ARG
70
1
Y
1
A
PHE
71
A
PHE
71
1
Y
1
A
GLN
72
A
GLN
72
1
Y
1
A
SER
73
A
SER
73
1
Y
1
A
LEU
74
A
LEU
74
1
Y
1
A
GLY
75
A
GLY
75
1
Y
1
A
VAL
76
A
VAL
76
1
Y
1
A
ALA
182
A
ALA
182
1
Y
1
4.02
0.50
120.30
124.32
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
27
27
27
N
1
5.84
0.90
118.30
124.14
A
A
A
CB
CG
OD2
ASP
ASP
ASP
64
64
64
N
1
A
ASP
53
-33.61
56.69
1
A
ASP
55
56.69
-113.76
1
A
LYS
127
73.64
34.61
20.1
-0.10
0.00
0.00
2.01
0.00
-1.92
0.2270000
0.1610000
0.1910000
0.1910000
1.35
22.61
2413
36545
36545
6.6
98.4
RANDOM
1065395.08
0.000000
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
YPT7-GPPNHP
ENGH AND HUBER
0.19
0.17
5.00
0.14
0.15
1.35
22.61
172
1472
29
0
1271
0.012
0.029
0.000
0.0282
0.053
0.069
0.014
0.005
0.062
0.083
0.3650000
0.020
0.3230000
1.45
342
5543
6
5.8
97.1
14.7
1.35
25.0
1KY3
36543
36543
0.0
0.0
0.0810000
1
15.77
5.4
98.6
0.3080000
1.35
1.45
4.33
6841
4.2
97.3
phasing
AMoRE
refinement
SHELXL-97
data collection
MAR345
data scaling
XDS
GDP-BOUND YPT7P AT 1.35 A RESOLUTION
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
20
A
GLY
20
HELX_P
A
ASP
31
A
ASP
31
1
1
12
A
ASN
93
A
ASN
93
HELX_P
A
ASN
99
A
ASN
99
1
2
7
A
ASN
99
A
ASN
99
HELX_P
A
ASN
112
A
ASN
112
1
3
14
A
GLU
131
A
GLU
131
HELX_P
A
LYS
135
A
LYS
135
5
4
5
A
SER
138
A
SER
138
HELX_P
A
LEU
149
A
LEU
149
1
5
12
A
ASN
164
A
ASN
164
HELX_P
A
GLN
181
A
GLN
181
1
6
18
metalc
2.083
A
THR
22
A
OG1
THR
22
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.012
A
GDP
400
C
O3B
GDP
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.059
A
MG
401
B
MG
MG
1_555
A
HOH
583
D
O
HOH
1_555
metalc
2.175
A
MG
401
B
MG
MG
1_555
A
HOH
584
D
O
HOH
1_555
metalc
2.157
A
MG
401
B
MG
MG
1_555
A
HOH
585
D
O
HOH
1_555
metalc
2.034
A
MG
401
B
MG
MG
1_555
A
HOH
586
D
O
HOH
1_555
ENDOCYTOSIS/EXOCYTOSIS
G PROTEIN, VESICULAR TRAFFIC, GTP HYDROLYSIS, YPT/RAB PROTEIN, ENDOCYTOSIS, HYDROLASE, ENDOCYTOSIS-EXOCYTOSIS COMPLEX
YPT7_YEAST
UNP
1
1
P32939
MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR
GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK
NAINVDTAFEEIARSALQQNQA
1
182
1KY3
1
182
P32939
A
1
1
182
6
anti-parallel
parallel
parallel
parallel
parallel
A
LEU
46
A
LEU
46
A
VAL
50
A
VAL
50
A
ALA
58
A
ALA
58
A
TRP
63
A
TRP
63
A
ILE
8
A
ILE
8
A
LEU
14
A
LEU
14
A
CYS
84
A
CYS
84
A
ASP
90
A
ASP
90
A
PHE
121
A
PHE
121
A
ASN
126
A
ASN
126
A
LEU
154
A
LEU
154
A
THR
157
A
THR
157
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
6
BINDING SITE FOR RESIDUE GDP A 400
A
GDP
400
Software
20
A
THR
22
A
THR
22
6
1_555
A
GDP
400
C
GDP
6
1_555
A
HOH
583
D
HOH
6
1_555
A
HOH
584
D
HOH
6
1_555
A
HOH
585
D
HOH
6
1_555
A
HOH
586
D
HOH
6
1_555
A
GLY
18
A
GLY
18
20
1_555
A
VAL
19
A
VAL
19
20
1_555
A
GLY
20
A
GLY
20
20
1_555
A
LYS
21
A
LYS
21
20
1_555
A
THR
22
A
THR
22
20
1_555
A
SER
23
A
SER
23
20
1_555
A
TYR
33
A
TYR
33
20
1_555
A
ASN
126
A
ASN
126
20
1_555
A
LYS
127
A
LYS
127
20
1_555
A
ASP
129
A
ASP
129
20
1_555
A
SER
158
A
SER
158
20
1_555
A
ALA
159
A
ALA
159
20
1_555
A
LYS
160
A
LYS
160
20
1_555
A
MG
401
B
MG
20
1_555
A
HOH
553
D
HOH
20
1_555
A
HOH
584
D
HOH
20
1_555
A
HOH
585
D
HOH
20
1_555
A
HOH
586
D
HOH
20
1_555
A
HOH
587
D
HOH
20
1_555
A
HOH
649
D
HOH
20
1_555
19
P 21 21 21