0.010881
0.000000
0.000000
0.000000
0.010881
0.000000
0.000000
0.000000
0.005865
0.00000
0.00000
0.00000
Zhang, R.
Dementieva, I.
Vinokour, E.
Collart, F.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
91.900
91.900
170.506
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Struct.Biol.
JSBIEM
0803
1047-8477
139
161
170
10.1016/S1047-8477(02)00532-4
12457846
Structure of Bacillus subtilis YXKO--a member of the UPF0031 family and a putative kinase.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2001-11-25
SBC-2
Si 111 CHANNEL
MAD
M
x-ray
1
0.9795
1.0
0.9798
1.0
0.94656
1.0
19-ID
APS
0.9795,0.9798,0.94656
SYNCHROTRON
APS BEAMLINE 19-ID
30185.551
Hypothetical 29.9 kDa protein in SIGY-CYDD intergenic region
1
man
polymer
18.015
water
209
nat
water
no
yes
(MSE)NVPFWTEEHVRATLPERDAESHKGTYGTALLLAGSDD(MSE)PGAALLAGLGA(MSE)RSGLGKLVIGTSENVIP
LIVPVLPEATYWRDGWKKAADAQLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTP
HPGEFFR(MSE)TGVPVNELQKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTG
(MSE)ILG(MSE)LCCHEDPKHAVLNAVYLHGACAELWTDEHSAHTLLAHELSDILPRVWKRFE
MNVPFWTEEHVRATLPERDAESHKGTYGTALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVIPLIVPVLPEATYW
RDGWKKAADAQLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTPHPGEFFRMTGVP
VNELQKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAV
YLHGACAELWTDEHSAHTLLAHELSDILPRVWKRFE
A
APC234
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
Escherichia
sample
YXKO
1423
Bacillus subtilis
562
Escherichia coli
BL21-Gold(DE3)
PLASMID
MCSG7
1
2.98
58.75
VAPOR DIFFUSION, HANGING DROP
7.5
0.15 M MgCl2, 28% PEG400, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
software
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
1
0
2002-08-14
1
1
2007-11-27
1
2
2011-07-13
1
3
2017-10-11
_software.classification
_software.name
Y
RCSB
Y
RCSB
2002-02-04
REL
HOH
water
TIP
300
2
HOH
HOH
300
A
TIP
301
2
HOH
HOH
301
A
TIP
302
2
HOH
HOH
302
A
TIP
303
2
HOH
HOH
303
A
TIP
304
2
HOH
HOH
304
A
TIP
305
2
HOH
HOH
305
A
TIP
306
2
HOH
HOH
306
A
TIP
307
2
HOH
HOH
307
A
TIP
308
2
HOH
HOH
308
A
TIP
309
2
HOH
HOH
309
A
TIP
310
2
HOH
HOH
310
A
TIP
311
2
HOH
HOH
311
A
TIP
312
2
HOH
HOH
312
A
TIP
313
2
HOH
HOH
313
A
TIP
314
2
HOH
HOH
314
A
TIP
315
2
HOH
HOH
315
A
TIP
316
2
HOH
HOH
316
A
TIP
317
2
HOH
HOH
317
A
TIP
318
2
HOH
HOH
318
A
TIP
319
2
HOH
HOH
319
A
TIP
320
2
HOH
HOH
320
A
TIP
321
2
HOH
HOH
321
A
TIP
322
2
HOH
HOH
322
A
TIP
323
2
HOH
HOH
323
A
TIP
324
2
HOH
HOH
324
A
TIP
325
2
HOH
HOH
325
A
TIP
326
2
HOH
HOH
326
A
TIP
327
2
HOH
HOH
327
A
TIP
328
2
HOH
HOH
328
A
TIP
329
2
HOH
HOH
329
A
TIP
330
2
HOH
HOH
330
A
TIP
331
2
HOH
HOH
331
A
TIP
332
2
HOH
HOH
332
A
TIP
333
2
HOH
HOH
333
A
TIP
334
2
HOH
HOH
334
A
TIP
335
2
HOH
HOH
335
A
TIP
336
2
HOH
HOH
336
A
TIP
337
2
HOH
HOH
337
A
TIP
338
2
HOH
HOH
338
A
TIP
339
2
HOH
HOH
339
A
TIP
340
2
HOH
HOH
340
A
TIP
341
2
HOH
HOH
341
A
TIP
342
2
HOH
HOH
342
A
TIP
343
2
HOH
HOH
343
A
TIP
344
2
HOH
HOH
344
A
TIP
345
2
HOH
HOH
345
A
TIP
346
2
HOH
HOH
346
A
TIP
347
2
HOH
HOH
347
A
TIP
348
2
HOH
HOH
348
A
TIP
349
2
HOH
HOH
349
A
TIP
350
2
HOH
HOH
350
A
TIP
351
2
HOH
HOH
351
A
TIP
352
2
HOH
HOH
352
A
TIP
353
2
HOH
HOH
353
A
TIP
354
2
HOH
HOH
354
A
TIP
355
2
HOH
HOH
355
A
TIP
356
2
HOH
HOH
356
A
TIP
357
2
HOH
HOH
357
A
TIP
358
2
HOH
HOH
358
A
TIP
359
2
HOH
HOH
359
A
TIP
360
2
HOH
HOH
360
A
TIP
361
2
HOH
HOH
361
A
TIP
362
2
HOH
HOH
362
A
TIP
363
2
HOH
HOH
363
A
TIP
364
2
HOH
HOH
364
A
TIP
365
2
HOH
HOH
365
A
TIP
366
2
HOH
HOH
366
A
TIP
367
2
HOH
HOH
367
A
TIP
368
2
HOH
HOH
368
A
TIP
369
2
HOH
HOH
369
A
TIP
370
2
HOH
HOH
370
A
TIP
371
2
HOH
HOH
371
A
TIP
372
2
HOH
HOH
372
A
TIP
373
2
HOH
HOH
373
A
TIP
374
2
HOH
HOH
374
A
TIP
375
2
HOH
HOH
375
A
TIP
376
2
HOH
HOH
376
A
TIP
377
2
HOH
HOH
377
A
TIP
378
2
HOH
HOH
378
A
TIP
379
2
HOH
HOH
379
A
TIP
380
2
HOH
HOH
380
A
TIP
381
2
HOH
HOH
381
A
TIP
382
2
HOH
HOH
382
A
TIP
383
2
HOH
HOH
383
A
TIP
384
2
HOH
HOH
384
A
TIP
385
2
HOH
HOH
385
A
TIP
386
2
HOH
HOH
386
A
TIP
387
2
HOH
HOH
387
A
TIP
388
2
HOH
HOH
388
A
TIP
389
2
HOH
HOH
389
A
TIP
390
2
HOH
HOH
390
A
TIP
391
2
HOH
HOH
391
A
TIP
392
2
HOH
HOH
392
A
TIP
393
2
HOH
HOH
393
A
TIP
394
2
HOH
HOH
394
A
TIP
395
2
HOH
HOH
395
A
TIP
396
2
HOH
HOH
396
A
TIP
397
2
HOH
HOH
397
A
TIP
398
2
HOH
HOH
398
A
TIP
399
2
HOH
HOH
399
A
TIP
400
2
HOH
HOH
400
A
TIP
401
2
HOH
HOH
401
A
TIP
402
2
HOH
HOH
402
A
TIP
403
2
HOH
HOH
403
A
TIP
404
2
HOH
HOH
404
A
TIP
405
2
HOH
HOH
405
A
TIP
406
2
HOH
HOH
406
A
TIP
407
2
HOH
HOH
407
A
TIP
408
2
HOH
HOH
408
A
TIP
409
2
HOH
HOH
409
A
TIP
410
2
HOH
HOH
410
A
TIP
411
2
HOH
HOH
411
A
TIP
412
2
HOH
HOH
412
A
TIP
413
2
HOH
HOH
413
A
TIP
414
2
HOH
HOH
414
A
TIP
415
2
HOH
HOH
415
A
TIP
416
2
HOH
HOH
416
A
TIP
417
2
HOH
HOH
417
A
TIP
418
2
HOH
HOH
418
A
TIP
419
2
HOH
HOH
419
A
TIP
420
2
HOH
HOH
420
A
TIP
421
2
HOH
HOH
421
A
TIP
422
2
HOH
HOH
422
A
TIP
423
2
HOH
HOH
423
A
TIP
424
2
HOH
HOH
424
A
TIP
425
2
HOH
HOH
425
A
TIP
426
2
HOH
HOH
426
A
TIP
427
2
HOH
HOH
427
A
TIP
428
2
HOH
HOH
428
A
TIP
429
2
HOH
HOH
429
A
TIP
430
2
HOH
HOH
430
A
TIP
431
2
HOH
HOH
431
A
TIP
432
2
HOH
HOH
432
A
TIP
433
2
HOH
HOH
433
A
TIP
434
2
HOH
HOH
434
A
TIP
435
2
HOH
HOH
435
A
TIP
436
2
HOH
HOH
436
A
TIP
437
2
HOH
HOH
437
A
TIP
438
2
HOH
HOH
438
A
TIP
439
2
HOH
HOH
439
A
TIP
440
2
HOH
HOH
440
A
TIP
441
2
HOH
HOH
441
A
TIP
442
2
HOH
HOH
442
A
TIP
443
2
HOH
HOH
443
A
TIP
444
2
HOH
HOH
444
A
TIP
445
2
HOH
HOH
445
A
TIP
446
2
HOH
HOH
446
A
TIP
447
2
HOH
HOH
447
A
TIP
448
2
HOH
HOH
448
A
TIP
449
2
HOH
HOH
449
A
TIP
450
2
HOH
HOH
450
A
TIP
451
2
HOH
HOH
451
A
TIP
452
2
HOH
HOH
452
A
TIP
453
2
HOH
HOH
453
A
TIP
454
2
HOH
HOH
454
A
TIP
455
2
HOH
HOH
455
A
TIP
456
2
HOH
HOH
456
A
TIP
457
2
HOH
HOH
457
A
TIP
458
2
HOH
HOH
458
A
TIP
459
2
HOH
HOH
459
A
TIP
460
2
HOH
HOH
460
A
TIP
461
2
HOH
HOH
461
A
TIP
462
2
HOH
HOH
462
A
TIP
463
2
HOH
HOH
463
A
TIP
464
2
HOH
HOH
464
A
TIP
465
2
HOH
HOH
465
A
TIP
466
2
HOH
HOH
466
A
TIP
467
2
HOH
HOH
467
A
TIP
468
2
HOH
HOH
468
A
TIP
469
2
HOH
HOH
469
A
TIP
470
2
HOH
HOH
470
A
TIP
471
2
HOH
HOH
471
A
TIP
472
2
HOH
HOH
472
A
TIP
473
2
HOH
HOH
473
A
TIP
474
2
HOH
HOH
474
A
TIP
475
2
HOH
HOH
475
A
TIP
476
2
HOH
HOH
476
A
TIP
477
2
HOH
HOH
477
A
TIP
478
2
HOH
HOH
478
A
TIP
479
2
HOH
HOH
479
A
TIP
480
2
HOH
HOH
480
A
TIP
481
2
HOH
HOH
481
A
TIP
482
2
HOH
HOH
482
A
TIP
483
2
HOH
HOH
483
A
TIP
484
2
HOH
HOH
484
A
TIP
485
2
HOH
HOH
485
A
TIP
486
2
HOH
HOH
486
A
TIP
487
2
HOH
HOH
487
A
TIP
488
2
HOH
HOH
488
A
TIP
489
2
HOH
HOH
489
A
TIP
490
2
HOH
HOH
490
A
TIP
491
2
HOH
HOH
491
A
TIP
492
2
HOH
HOH
492
A
TIP
493
2
HOH
HOH
493
A
TIP
494
2
HOH
HOH
494
A
TIP
495
2
HOH
HOH
495
A
TIP
496
2
HOH
HOH
496
A
TIP
497
2
HOH
HOH
497
A
TIP
498
2
HOH
HOH
498
A
TIP
499
2
HOH
HOH
499
A
TIP
500
2
HOH
HOH
500
A
TIP
501
2
HOH
HOH
501
A
TIP
502
2
HOH
HOH
502
A
TIP
503
2
HOH
HOH
503
A
TIP
504
2
HOH
HOH
504
A
TIP
505
2
HOH
HOH
505
A
TIP
506
2
HOH
HOH
506
A
TIP
507
2
HOH
HOH
507
A
TIP
508
2
HOH
HOH
508
A
n
1
1
A
ASN
2
n
2
ASN
2
A
VAL
3
n
3
VAL
3
A
PRO
4
n
4
PRO
4
A
PHE
5
n
5
PHE
5
A
TRP
6
n
6
TRP
6
A
THR
7
n
7
THR
7
A
GLU
8
n
8
GLU
8
A
GLU
9
n
9
GLU
9
A
HIS
10
n
10
HIS
10
A
VAL
11
n
11
VAL
11
A
ARG
12
n
12
ARG
12
A
ALA
13
n
13
ALA
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
PRO
16
n
16
PRO
16
A
GLU
17
n
17
GLU
17
A
ARG
18
n
18
ARG
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
THR
26
n
26
THR
26
A
TYR
27
n
27
TYR
27
A
GLY
28
n
28
GLY
28
A
THR
29
n
29
THR
29
A
ALA
30
n
30
ALA
30
A
LEU
31
n
31
LEU
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
ALA
34
n
34
ALA
34
A
GLY
35
n
35
GLY
35
A
SER
36
n
36
SER
36
A
ASP
37
n
37
ASP
37
A
ASP
38
n
38
ASP
38
A
MSE
39
n
39
MSE
39
A
PRO
40
n
40
PRO
40
A
GLY
41
n
41
GLY
41
A
ALA
42
n
42
ALA
42
A
ALA
43
n
43
ALA
43
A
LEU
44
n
44
LEU
44
A
LEU
45
n
45
LEU
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LEU
48
n
48
LEU
48
A
GLY
49
n
49
GLY
49
A
ALA
50
n
50
ALA
50
A
MSE
51
n
51
MSE
51
A
ARG
52
n
52
ARG
52
A
SER
53
n
53
SER
53
A
GLY
54
n
54
GLY
54
A
LEU
55
n
55
LEU
55
A
GLY
56
n
56
GLY
56
A
LYS
57
n
57
LYS
57
A
LEU
58
n
58
LEU
58
A
VAL
59
n
59
VAL
59
A
ILE
60
n
60
ILE
60
A
GLY
61
n
61
GLY
61
A
THR
62
n
62
THR
62
A
SER
63
n
63
SER
63
A
GLU
64
n
64
GLU
64
A
ASN
65
n
65
ASN
65
A
VAL
66
n
66
VAL
66
A
ILE
67
n
67
ILE
67
A
PRO
68
n
68
PRO
68
A
LEU
69
n
69
LEU
69
A
ILE
70
n
70
ILE
70
A
VAL
71
n
71
VAL
71
A
PRO
72
n
72
PRO
72
A
VAL
73
n
73
VAL
73
A
LEU
74
n
74
LEU
74
A
PRO
75
n
75
PRO
75
A
GLU
76
n
76
GLU
76
A
ALA
77
n
77
ALA
77
A
THR
78
n
78
THR
78
A
TYR
79
n
79
TYR
79
A
TRP
80
n
80
TRP
80
A
ARG
81
n
81
ARG
81
A
ASP
82
n
82
ASP
82
A
GLY
83
n
83
GLY
83
A
TRP
84
n
84
TRP
84
A
LYS
85
n
85
LYS
85
A
LYS
86
n
86
LYS
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
ASP
89
n
89
ASP
89
A
ALA
90
n
90
ALA
90
A
GLN
91
n
91
GLN
91
A
LEU
92
n
92
LEU
92
A
GLU
93
n
93
GLU
93
A
GLU
94
n
94
GLU
94
A
THR
95
n
95
THR
95
A
TYR
96
n
96
TYR
96
A
ARG
97
n
97
ARG
97
A
ALA
98
n
98
ALA
98
A
ILE
99
n
99
ILE
99
A
ALA
100
n
100
ALA
100
A
ILE
101
n
101
ILE
101
A
GLY
102
n
102
GLY
102
A
PRO
103
n
103
PRO
103
A
GLY
104
n
104
GLY
104
A
LEU
105
n
105
LEU
105
A
PRO
106
n
106
PRO
106
A
GLN
107
n
107
GLN
107
A
THR
108
n
108
THR
108
A
GLU
109
n
109
GLU
109
A
SER
110
n
110
SER
110
A
VAL
111
n
111
VAL
111
A
GLN
112
n
112
GLN
112
A
GLN
113
n
113
GLN
113
A
ALA
114
n
114
ALA
114
A
VAL
115
n
115
VAL
115
A
ASP
116
n
116
ASP
116
A
HIS
117
n
117
HIS
117
A
VAL
118
n
118
VAL
118
A
LEU
119
n
119
LEU
119
A
THR
120
n
120
THR
120
A
ALA
121
n
121
ALA
121
A
ASP
122
n
122
ASP
122
A
CYS
123
n
123
CYS
123
A
PRO
124
n
124
PRO
124
A
VAL
125
n
125
VAL
125
A
ILE
126
n
126
ILE
126
A
LEU
127
n
127
LEU
127
A
ASP
128
n
128
ASP
128
A
ALA
129
n
129
ALA
129
A
GLY
130
n
130
GLY
130
A
ALA
131
n
131
ALA
131
A
LEU
132
n
132
LEU
132
A
ALA
133
n
133
ALA
133
A
LYS
134
n
134
LYS
134
A
ARG
135
n
135
ARG
135
A
THR
136
n
136
THR
136
A
TYR
137
n
137
TYR
137
A
PRO
138
n
138
PRO
138
A
LYS
139
n
139
LYS
139
A
ARG
140
n
140
ARG
140
A
GLU
141
n
141
GLU
141
A
GLY
142
n
142
GLY
142
A
PRO
143
n
143
PRO
143
A
VAL
144
n
144
VAL
144
A
ILE
145
n
145
ILE
145
A
LEU
146
n
146
LEU
146
A
THR
147
n
147
THR
147
A
PRO
148
n
148
PRO
148
A
HIS
149
n
149
HIS
149
A
PRO
150
n
150
PRO
150
A
GLY
151
n
151
GLY
151
A
GLU
152
n
152
GLU
152
A
PHE
153
n
153
PHE
153
A
PHE
154
n
154
PHE
154
A
ARG
155
n
155
ARG
155
A
MSE
156
n
156
MSE
156
A
THR
157
n
157
THR
157
A
GLY
158
n
158
GLY
158
A
VAL
159
n
159
VAL
159
A
PRO
160
n
160
PRO
160
A
VAL
161
n
161
VAL
161
A
ASN
162
n
162
ASN
162
A
GLU
163
n
163
GLU
163
A
LEU
164
n
164
LEU
164
A
GLN
165
n
165
GLN
165
A
LYS
166
n
166
LYS
166
A
LYS
167
n
167
LYS
167
A
ARG
168
n
168
ARG
168
A
ALA
169
n
169
ALA
169
A
GLU
170
n
170
GLU
170
A
TYR
171
n
171
TYR
171
A
ALA
172
n
172
ALA
172
A
LYS
173
n
173
LYS
173
A
GLU
174
n
174
GLU
174
A
TRP
175
n
175
TRP
175
A
ALA
176
n
176
ALA
176
A
ALA
177
n
177
ALA
177
A
GLN
178
n
178
GLN
178
A
LEU
179
n
179
LEU
179
A
GLN
180
n
180
GLN
180
A
THR
181
n
181
THR
181
A
VAL
182
n
182
VAL
182
A
ILE
183
n
183
ILE
183
A
VAL
184
n
184
VAL
184
A
LEU
185
n
185
LEU
185
A
LYS
186
n
186
LYS
186
A
GLY
187
n
187
GLY
187
A
ASN
188
n
188
ASN
188
A
GLN
189
n
189
GLN
189
A
THR
190
n
190
THR
190
A
VAL
191
n
191
VAL
191
A
ILE
192
n
192
ILE
192
A
ALA
193
n
193
ALA
193
A
PHE
194
n
194
PHE
194
A
PRO
195
n
195
PRO
195
A
ASP
196
n
196
ASP
196
A
GLY
197
n
197
GLY
197
A
ASP
198
n
198
ASP
198
A
CYS
199
n
199
CYS
199
A
TRP
200
n
200
TRP
200
A
LEU
201
n
201
LEU
201
A
ASN
202
n
202
ASN
202
A
PRO
203
n
203
PRO
203
A
THR
204
n
204
THR
204
A
GLY
205
n
205
GLY
205
A
ASN
206
n
206
ASN
206
A
GLY
207
n
207
GLY
207
A
ALA
208
n
208
ALA
208
A
LEU
209
n
209
LEU
209
A
ALA
210
n
210
ALA
210
A
LYS
211
n
211
LYS
211
A
GLY
212
n
212
GLY
212
A
GLY
213
n
213
GLY
213
A
THR
214
n
214
THR
214
A
GLY
215
n
215
GLY
215
A
ASP
216
n
216
ASP
216
A
THR
217
n
217
THR
217
A
LEU
218
n
218
LEU
218
A
THR
219
n
219
THR
219
A
GLY
220
n
220
GLY
220
A
MSE
221
n
221
MSE
221
A
ILE
222
n
222
ILE
222
A
LEU
223
n
223
LEU
223
A
GLY
224
n
224
GLY
224
A
MSE
225
n
225
MSE
225
A
LEU
226
n
226
LEU
226
A
CYS
227
n
227
CYS
227
A
CYS
228
n
228
CYS
228
A
HIS
229
n
229
HIS
229
A
GLU
230
n
230
GLU
230
A
ASP
231
n
231
ASP
231
A
PRO
232
n
232
PRO
232
A
LYS
233
n
233
LYS
233
A
HIS
234
n
234
HIS
234
A
ALA
235
n
235
ALA
235
A
VAL
236
n
236
VAL
236
A
LEU
237
n
237
LEU
237
A
ASN
238
n
238
ASN
238
A
ALA
239
n
239
ALA
239
A
VAL
240
n
240
VAL
240
A
TYR
241
n
241
TYR
241
A
LEU
242
n
242
LEU
242
A
HIS
243
n
243
HIS
243
A
GLY
244
n
244
GLY
244
A
ALA
245
n
245
ALA
245
A
CYS
246
n
246
CYS
246
A
ALA
247
n
247
ALA
247
A
GLU
248
n
248
GLU
248
A
LEU
249
n
249
LEU
249
A
TRP
250
n
250
TRP
250
A
THR
251
n
251
THR
251
A
ASP
252
n
252
ASP
252
A
GLU
253
n
253
GLU
253
A
HIS
254
n
254
HIS
254
A
SER
255
n
255
SER
255
A
ALA
256
n
256
ALA
256
A
HIS
257
n
257
HIS
257
A
THR
258
n
258
THR
258
A
LEU
259
n
259
LEU
259
A
LEU
260
n
260
LEU
260
A
ALA
261
n
261
ALA
261
A
HIS
262
n
262
HIS
262
A
GLU
263
n
263
GLU
263
A
LEU
264
n
264
LEU
264
A
SER
265
n
265
SER
265
A
ASP
266
n
266
ASP
266
A
ILE
267
n
267
ILE
267
A
LEU
268
n
268
LEU
268
A
PRO
269
n
269
PRO
269
A
ARG
270
n
270
ARG
270
A
VAL
271
n
271
VAL
271
A
TRP
272
n
272
TRP
272
A
LYS
273
n
273
LYS
273
A
ARG
274
n
274
ARG
274
A
PHE
275
n
275
PHE
275
A
GLU
276
n
276
GLU
276
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
4
tetrameric
9330
-38
37890
A
MSE
39
SELENOMETHIONINE
A
MSE
39
MET
A
MSE
51
SELENOMETHIONINE
A
MSE
51
MET
A
MSE
156
SELENOMETHIONINE
A
MSE
156
MET
A
MSE
221
SELENOMETHIONINE
A
MSE
221
MET
A
MSE
225
SELENOMETHIONINE
A
MSE
225
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-y,x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_555
y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
78
A
O
THR
78
A
N
ILE
60
A
N
ILE
60
A
O
GLY
61
A
O
GLY
61
A
N
LEU
32
A
N
LEU
32
A
N
LEU
33
A
N
LEU
33
A
O
ALA
100
A
O
ALA
100
A
N
ILE
99
A
N
ILE
99
A
O
ILE
126
A
O
ILE
126
A
N
VAL
125
A
N
VAL
125
A
O
ILE
145
A
O
ILE
145
A
N
LEU
146
A
N
LEU
146
A
O
VAL
184
A
O
VAL
184
A
N
ILE
183
A
N
ILE
183
A
O
ALA
193
A
O
ALA
193
A
N
ILE
192
A
N
ILE
192
A
O
TRP
200
A
O
TRP
200
1
A
MSE
1
A
MSE
1
1
Y
1
A
ASP
19
A
ASP
19
1
Y
1
A
ALA
20
A
ALA
20
1
Y
1
A
GLU
21
A
GLU
21
1
Y
1
A
SER
22
A
SER
22
1
Y
1
A
HIS
23
A
HIS
23
1
Y
1
A
LYS
24
A
LYS
24
1
Y
1
A
GLY
25
A
GLY
25
1
Y
1
A
SER
53
-99.32
37.25
1
A
ALA
129
43.42
-118.49
1
A
LYS
167
-144.73
55.14
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
22.9
-2.57
0.00
0.00
-2.57
0.00
5.14
hlml refinement target of CNS was used in the refinement. The Friedel pairs were used in phasing and refinement.
0.232
0.004
0.228
0.23
0.229
1.60
33.30
3754
92275
76312
4.9
82.7
RANDOM
950056.05
0.000000
1
RESTRAINED
THROUGHOUT
1.0
MAD
CNS library
FLAT MODEL
42.1038
0.424071
0.22
0.21
5.00
0.14
0.11
1.60
33.30
209
2252
0
0
2043
0.005
1.4
22.0
0.80
0.59
1.50
1.01
2.00
0.98
2.00
1.42
2.50
0.267
0.013
0.234
1.70
453
8786
6
4.9
60.1
18.6
1.6
50
1KYH
92275
4.0
4.0
0.146
1
31.0
17.0
97.3
0.546
1.60
1.65
2.09
4902
1
4.68
86.
data scaling
d*TREK
data reduction
HKL-2000
refinement
CNS
data reduction
d*TREK
data scaling
HKL-2000
phasing
CNS
Hypothetical 29.9 kDa protein in SIGY-CYDD intergenic region
Structure of Bacillus subtilis YxkO, a Member of the UPF0031 Family and a Putative Kinase
1
N
N
2
N
N
This protein (APC234) existed as tetramer which
is generated by the crystallographic
four fold axis
A
THR
7
A
THR
7
HELX_P
A
LEU
15
A
LEU
15
1
1
9
A
PRO
40
A
PRO
40
HELX_P
A
SER
53
A
SER
53
1
2
14
A
VAL
66
A
VAL
66
HELX_P
A
VAL
71
A
VAL
71
1
3
6
A
ASP
82
A
ASP
82
HELX_P
A
ALA
87
A
ALA
87
1
4
6
A
THR
108
A
THR
108
HELX_P
A
LEU
119
A
LEU
119
1
5
12
A
ALA
129
A
ALA
129
HELX_P
A
LEU
132
A
LEU
132
5
6
4
A
HIS
149
A
HIS
149
HELX_P
A
GLY
158
A
GLY
158
1
7
10
A
PRO
160
A
PRO
160
HELX_P
A
GLN
165
A
GLN
165
1
8
6
A
LYS
167
A
LYS
167
HELX_P
A
GLN
180
A
GLN
180
1
9
14
A
ASN
206
A
ASN
206
HELX_P
A
ALA
210
A
ALA
210
5
10
5
A
GLY
213
A
GLY
213
HELX_P
A
HIS
229
A
HIS
229
1
11
17
A
ASP
231
A
ASP
231
HELX_P
A
HIS
254
A
HIS
254
1
12
24
A
SER
255
A
SER
255
HELX_P
A
LEU
259
A
LEU
259
5
13
5
A
LEU
260
A
LEU
260
HELX_P
A
LEU
260
A
LEU
260
5
14
1
A
ALA
261
A
ALA
261
HELX_P
A
PHE
275
A
PHE
275
1
15
15
covale
1.330
A
ASP
38
A
C
ASP
38
1_555
A
MSE
39
A
N
MSE
39
1_555
covale
1.338
A
MSE
39
A
C
MSE
39
1_555
A
PRO
40
A
N
PRO
40
1_555
covale
1.330
A
ALA
50
A
C
ALA
50
1_555
A
MSE
51
A
N
MSE
51
1_555
covale
1.328
A
MSE
51
A
C
MSE
51
1_555
A
ARG
52
A
N
ARG
52
1_555
covale
1.327
A
ARG
155
A
C
ARG
155
1_555
A
MSE
156
A
N
MSE
156
1_555
covale
1.329
A
MSE
156
A
C
MSE
156
1_555
A
THR
157
A
N
THR
157
1_555
covale
1.327
A
GLY
220
A
C
GLY
220
1_555
A
MSE
221
A
N
MSE
221
1_555
covale
1.327
A
MSE
221
A
C
MSE
221
1_555
A
ILE
222
A
N
ILE
222
1_555
covale
1.326
A
GLY
224
A
C
GLY
224
1_555
A
MSE
225
A
N
MSE
225
1_555
covale
1.330
A
MSE
225
A
C
MSE
225
1_555
A
LEU
226
A
N
LEU
226
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION
YXKO_BACSU
UNP
1
1
P94368
MNVPFWTEEHVRATLPERDAESHKGTYGTALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVIPLIVPVLPEATYW
RDGWKKAADAQLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTPHPGEFFRMTGVP
VNELQKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAV
YLHGACAELWTDEHSAHTLLAHELSDILPRVWKRFE
1
276
1KYH
1
276
P94368
A
1
1
276
1
MET
MODIFIED RESIDUE
MSE
1
1KYH
A
P94368
UNP
1
1
1
MET
MODIFIED RESIDUE
MSE
39
1KYH
A
P94368
UNP
39
39
1
MET
MODIFIED RESIDUE
MSE
51
1KYH
A
P94368
UNP
51
51
1
MET
MODIFIED RESIDUE
MSE
156
1KYH
A
P94368
UNP
156
156
1
MET
MODIFIED RESIDUE
MSE
221
1KYH
A
P94368
UNP
221
221
1
MET
MODIFIED RESIDUE
MSE
225
1KYH
A
P94368
UNP
225
225
9
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
THR
78
A
THR
78
A
TYR
79
A
TYR
79
A
LYS
57
A
LYS
57
A
GLY
61
A
GLY
61
A
THR
29
A
THR
29
A
LEU
33
A
LEU
33
A
ALA
98
A
ALA
98
A
ILE
101
A
ILE
101
A
VAL
125
A
VAL
125
A
LEU
127
A
LEU
127
A
VAL
144
A
VAL
144
A
LEU
146
A
LEU
146
A
VAL
182
A
VAL
182
A
LEU
185
A
LEU
185
A
VAL
191
A
VAL
191
A
ALA
193
A
ALA
193
A
CYS
199
A
CYS
199
A
LEU
201
A
LEU
201
97
I 4 2 2