1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Coltart, D.M. Williams, L.J. Glunz, P.W. Sames, D. Kuduk, S.D. Schwarz, J.B. Chen, X.-T. Royyuru, A.K. Danishefsky, S.D. Live, D.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C8 H15 N O6 221.208 2-acetamido-2-deoxy-alpha-D-galactopyranose D-saccharide, alpha linking C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Am.Chem.Soc. JACSAT 0004 0002-7863 124 9833 9844 10.1021/ja020208f 12175243 Principles of Mucin Architecture: Structural Studies on Synthetic Glycopeptides Bearing Clustered Mono-, Di-, Tri-, and Hexasaccharide Glycodomains 2002 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 96 3489 3493 10.1073/pnas.96.7.3489 Probing Cell-Surface Architecture Through Synthesis: An NMR Determined Structural Motif for Tumor-Associated Mucins 1999 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ser A 1, Thr A 2, Thr A 3 modified with glycosylation by STF antigen 503.547 Leukosialin (CD43) fragment N-terminal glycopentapeptide 1 syn polymer 221.208 2-acetamido-2-deoxy-alpha-D-galactopyranose 3 syn non-polymer pentapeptide fragment of sialophorin no yes (ACE)STTAV XSTTAV A polypeptide(L) n n n n n n atom_site chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Atomic model Data collection Derived calculations Structure summary 1 0 2002-02-20 1 1 2008-04-28 1 2 2011-07-13 2 0 2020-07-29 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id DGalpNAca N-acetyl-a-D-galactopyranosamine a-D-GalpNAc GalNAc 2002-02-20 SPRSDE RCSB Y RCSB 2002-02-04 REL REL A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose Fragment of human sequence sample Coordinates are given only for the experimentally defined glycopeptide core residues. These are comprised of the amino acid units in the peptide and the N-acetyl-galactosamine. Coordinates for the terminal galactose and sialic acid of each of the glycans are not included. No NOE violations greter than 0.15A, no coupling violation greater than 0.5 Hz, no angle violation greater than 5 deg. 200 59 2D NOESY 3D_TOCSY_NOESY 4.5 1 atm 291 K refinement based on 107 NOE's 11 J coupling restraints and 3 dihedral restraints. See citation for full description. VNMR, NMRPIPE, X-PLOR, Torsion Space Simulated Annealing 1 closest to the average 10 mM glycopeptide 90% H2O/10% D2O Varian Inc. collection VNMR 6.1 Varian Inc. data analysis VNMR 6.1 Delaglio data analysis NMRPipe 2.1 Brunger/MSI refinement X-PLOR 98 600 Varian INOVA 800 Varian INOVA A2G 7 2 A2G A2G 7 A A2G 10 2 A2G A2G 10 A A2G 13 2 A2G A2G 13 A ACE 0 n 1 ACE 0 A SER 1 n 2 SER 1 A THR 2 n 3 THR 2 A THR 3 n 4 THR 3 A ALA 4 n 5 ALA 4 A VAL 5 n 6 VAL 5 A author_defined_assembly 1 monomeric A SER 1 GLYCOSYLATION SITE A SER 2 SER A THR 2 GLYCOSYLATION SITE A THR 3 THR A THR 3 GLYCOSYLATION SITE A THR 4 THR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A O6 A2G 7 B O6 A2G 1 1 N 1 A O6 A2G 10 C O6 A2G 1 1 N 1 A O6 A2G 13 D O6 A2G 1 1 N 2 A O6 A2G 7 B O6 A2G 1 1 N 2 A O6 A2G 10 C O6 A2G 1 1 N 2 A O6 A2G 13 D O6 A2G 1 1 N 3 A O6 A2G 7 B O6 A2G 1 1 N 3 A O6 A2G 10 C O6 A2G 1 1 N 3 A O6 A2G 13 D O6 A2G 1 1 N 4 A O6 A2G 7 B O6 A2G 1 1 N 4 A O6 A2G 10 C O6 A2G 1 1 N 4 A O6 A2G 13 D O6 A2G 1 1 N 5 A O6 A2G 7 B O6 A2G 1 1 N 5 A O6 A2G 10 C O6 A2G 1 1 N 5 A O6 A2G 13 D O6 A2G 1 1 N 6 A O6 A2G 7 B O6 A2G 1 1 N 6 A O6 A2G 10 C O6 A2G 1 1 N 6 A O6 A2G 13 D O6 A2G 1 1 N 7 A O6 A2G 7 B O6 A2G 1 1 N 7 A O6 A2G 10 C O6 A2G 1 1 N 7 A O6 A2G 13 D O6 A2G 1 1 N 8 A O6 A2G 7 B O6 A2G 1 1 N 8 A O6 A2G 10 C O6 A2G 1 1 N 8 A O6 A2G 13 D O6 A2G 1 1 N 9 A O6 A2G 7 B O6 A2G 1 1 N 9 A O6 A2G 10 C O6 A2G 1 1 N 9 A O6 A2G 13 D O6 A2G 1 1 N 10 A O6 A2G 7 B O6 A2G 1 1 N 10 A O6 A2G 10 C O6 A2G 1 1 N 10 A O6 A2G 13 D O6 A2G 1 1 N 11 A O6 A2G 7 B O6 A2G 1 1 N 11 A O6 A2G 10 C O6 A2G 1 1 N 11 A O6 A2G 13 D O6 A2G 1 1 N 12 A O6 A2G 7 B O6 A2G 1 1 N 12 A O6 A2G 10 C O6 A2G 1 1 N 12 A O6 A2G 13 D O6 A2G 1 1 N 13 A O6 A2G 7 B O6 A2G 1 1 N 13 A O6 A2G 10 C O6 A2G 1 1 N 13 A O6 A2G 13 D O6 A2G 1 1 N 14 A O6 A2G 7 B O6 A2G 1 1 N 14 A O6 A2G 10 C O6 A2G 1 1 N 14 A O6 A2G 13 D O6 A2G 1 1 N 15 A O6 A2G 7 B O6 A2G 1 1 N 15 A O6 A2G 10 C O6 A2G 1 1 N 15 A O6 A2G 13 D O6 A2G 1 1 N 16 A O6 A2G 7 B O6 A2G 1 1 N 16 A O6 A2G 10 C O6 A2G 1 1 N 16 A O6 A2G 13 D O6 A2G 1 1 N 17 A O6 A2G 7 B O6 A2G 1 1 N 17 A O6 A2G 10 C O6 A2G 1 1 N 17 A O6 A2G 13 D O6 A2G 1 1 N 18 A O6 A2G 7 B O6 A2G 1 1 N 18 A O6 A2G 10 C O6 A2G 1 1 N 18 A O6 A2G 13 D O6 A2G 1 1 N 19 A O6 A2G 7 B O6 A2G 1 1 N 19 A O6 A2G 10 C O6 A2G 1 1 N 19 A O6 A2G 13 D O6 A2G 1 1 N 20 A O6 A2G 7 B O6 A2G 1 1 N 20 A O6 A2G 10 C O6 A2G 1 1 N 20 A O6 A2G 13 D O6 A2G 1 1 N 21 A O6 A2G 7 B O6 A2G 1 1 N 21 A O6 A2G 10 C O6 A2G 1 1 N 21 A O6 A2G 13 D O6 A2G 1 1 N 22 A O6 A2G 7 B O6 A2G 1 1 N 22 A O6 A2G 10 C O6 A2G 1 1 N 22 A O6 A2G 13 D O6 A2G 1 1 N 23 A O6 A2G 7 B O6 A2G 1 1 N 23 A O6 A2G 10 C O6 A2G 1 1 N 23 A O6 A2G 13 D O6 A2G 1 1 N 24 A O6 A2G 7 B O6 A2G 1 1 N 24 A O6 A2G 10 C O6 A2G 1 1 N 24 A O6 A2G 13 D O6 A2G 1 1 N 25 A O6 A2G 7 B O6 A2G 1 1 N 25 A O6 A2G 10 C O6 A2G 1 1 N 25 A O6 A2G 13 D O6 A2G 1 1 N 26 A O6 A2G 7 B O6 A2G 1 1 N 26 A O6 A2G 10 C O6 A2G 1 1 N 26 A O6 A2G 13 D O6 A2G 1 1 N 27 A O6 A2G 7 B O6 A2G 1 1 N 27 A O6 A2G 10 C O6 A2G 1 1 N 27 A O6 A2G 13 D O6 A2G 1 1 N 28 A O6 A2G 7 B O6 A2G 1 1 N 28 A O6 A2G 10 C O6 A2G 1 1 N 28 A O6 A2G 13 D O6 A2G 1 1 N 29 A O6 A2G 7 B O6 A2G 1 1 N 29 A O6 A2G 10 C O6 A2G 1 1 N 29 A O6 A2G 13 D O6 A2G 1 1 N 30 A O6 A2G 7 B O6 A2G 1 1 N 30 A O6 A2G 10 C O6 A2G 1 1 N 30 A O6 A2G 13 D O6 A2G 1 1 N 31 A O6 A2G 7 B O6 A2G 1 1 N 31 A O6 A2G 10 C O6 A2G 1 1 N 31 A O6 A2G 13 D O6 A2G 1 1 N 32 A O6 A2G 7 B O6 A2G 1 1 N 32 A O6 A2G 10 C O6 A2G 1 1 N 32 A O6 A2G 13 D O6 A2G 1 1 N 33 A O6 A2G 7 B O6 A2G 1 1 N 33 A O6 A2G 10 C O6 A2G 1 1 N 33 A O6 A2G 13 D O6 A2G 1 1 N 34 A O6 A2G 7 B O6 A2G 1 1 N 34 A O6 A2G 10 C O6 A2G 1 1 N 34 A O6 A2G 13 D O6 A2G 1 1 N 35 A O6 A2G 7 B O6 A2G 1 1 N 35 A O6 A2G 10 C O6 A2G 1 1 N 35 A O6 A2G 13 D O6 A2G 1 1 N 36 A O6 A2G 7 B O6 A2G 1 1 N 36 A O6 A2G 10 C O6 A2G 1 1 N 36 A O6 A2G 13 D O6 A2G 1 1 N 37 A O6 A2G 7 B O6 A2G 1 1 N 37 A O6 A2G 10 C O6 A2G 1 1 N 37 A O6 A2G 13 D O6 A2G 1 1 N 38 A O6 A2G 7 B O6 A2G 1 1 N 38 A O6 A2G 10 C O6 A2G 1 1 N 38 A O6 A2G 13 D O6 A2G 1 1 N 39 A O6 A2G 7 B O6 A2G 1 1 N 39 A O6 A2G 10 C O6 A2G 1 1 N 39 A O6 A2G 13 D O6 A2G 1 1 N 40 A O6 A2G 7 B O6 A2G 1 1 N 40 A O6 A2G 10 C O6 A2G 1 1 N 40 A O6 A2G 13 D O6 A2G 1 1 N 41 A O6 A2G 7 B O6 A2G 1 1 N 41 A O6 A2G 10 C O6 A2G 1 1 N 41 A O6 A2G 13 D O6 A2G 1 1 N 42 A O6 A2G 7 B O6 A2G 1 1 N 42 A O6 A2G 10 C O6 A2G 1 1 N 42 A O6 A2G 13 D O6 A2G 1 1 N 43 A O6 A2G 7 B O6 A2G 1 1 N 43 A O6 A2G 10 C O6 A2G 1 1 N 43 A O6 A2G 13 D O6 A2G 1 1 N 44 A O6 A2G 7 B O6 A2G 1 1 N 44 A O6 A2G 10 C O6 A2G 1 1 N 44 A O6 A2G 13 D O6 A2G 1 1 N 45 A O6 A2G 7 B O6 A2G 1 1 N 45 A O6 A2G 10 C O6 A2G 1 1 N 45 A O6 A2G 13 D O6 A2G 1 1 N 46 A O6 A2G 7 B O6 A2G 1 1 N 46 A O6 A2G 10 C O6 A2G 1 1 N 46 A O6 A2G 13 D O6 A2G 1 1 N 47 A O6 A2G 7 B O6 A2G 1 1 N 47 A O6 A2G 10 C O6 A2G 1 1 N 47 A O6 A2G 13 D O6 A2G 1 1 N 48 A O6 A2G 7 B O6 A2G 1 1 N 48 A O6 A2G 10 C O6 A2G 1 1 N 48 A O6 A2G 13 D O6 A2G 1 1 N 49 A O6 A2G 7 B O6 A2G 1 1 N 49 A O6 A2G 10 C O6 A2G 1 1 N 49 A O6 A2G 13 D O6 A2G 1 1 N 50 A O6 A2G 7 B O6 A2G 1 1 N 50 A O6 A2G 10 C O6 A2G 1 1 N 50 A O6 A2G 13 D O6 A2G 1 1 N 51 A O6 A2G 7 B O6 A2G 1 1 N 51 A O6 A2G 10 C O6 A2G 1 1 N 51 A O6 A2G 13 D O6 A2G 1 1 N 52 A O6 A2G 7 B O6 A2G 1 1 N 52 A O6 A2G 10 C O6 A2G 1 1 N 52 A O6 A2G 13 D O6 A2G 1 1 N 53 A O6 A2G 7 B O6 A2G 1 1 N 53 A O6 A2G 10 C O6 A2G 1 1 N 53 A O6 A2G 13 D O6 A2G 1 1 N 54 A O6 A2G 7 B O6 A2G 1 1 N 54 A O6 A2G 10 C O6 A2G 1 1 N 54 A O6 A2G 13 D O6 A2G 1 1 N 55 A O6 A2G 7 B O6 A2G 1 1 N 55 A O6 A2G 10 C O6 A2G 1 1 N 55 A O6 A2G 13 D O6 A2G 1 1 N 56 A O6 A2G 7 B O6 A2G 1 1 N 56 A O6 A2G 10 C O6 A2G 1 1 N 56 A O6 A2G 13 D O6 A2G 1 1 N 57 A O6 A2G 7 B O6 A2G 1 1 N 57 A O6 A2G 10 C O6 A2G 1 1 N 57 A O6 A2G 13 D O6 A2G 1 1 N 58 A O6 A2G 7 B O6 A2G 1 1 N 58 A O6 A2G 10 C O6 A2G 1 1 N 58 A O6 A2G 13 D O6 A2G 1 1 N 59 A O6 A2G 7 B O6 A2G 1 1 N 59 A O6 A2G 10 C O6 A2G 1 1 N 59 A O6 A2G 13 D O6 A2G 1 1 N 1 A ALA 4 -84.99 -142.57 4 A ALA 4 -85.30 -143.55 6 A ALA 4 -84.99 -143.59 11 A ALA 4 -153.51 -147.73 14 A ALA 4 -84.74 -142.22 15 A ALA 4 -85.09 -142.39 16 A ALA 4 -152.37 -149.20 17 A ALA 4 -84.84 -142.15 18 A ALA 4 -84.96 -143.21 19 A ALA 4 -154.78 -146.26 22 A ALA 4 -84.77 -143.49 23 A ALA 4 -153.67 -148.45 25 A THR 2 -95.49 -159.50 25 A ALA 4 -84.77 -143.59 27 A THR 2 -94.80 -156.12 27 A ALA 4 -84.68 -143.88 28 A ALA 4 -85.20 -142.04 31 A ALA 4 -85.04 -142.65 34 A ALA 4 -154.62 -145.77 35 A THR 2 -95.96 -155.09 37 A THR 2 -96.65 -153.06 38 A ALA 4 -84.76 -143.00 39 A THR 2 -94.96 -158.67 39 A ALA 4 -84.75 -143.31 40 A THR 2 -95.59 -155.40 42 A THR 2 -94.70 -157.10 42 A ALA 4 -85.03 -141.80 43 A ALA 4 -153.85 -147.59 44 A THR 2 -96.14 -158.31 44 A ALA 4 -84.85 -143.97 45 A ALA 4 -85.30 -143.59 47 A ALA 4 -84.47 -142.07 49 A ALA 4 -84.59 -143.26 50 A ALA 4 -84.82 -144.03 52 A ALA 4 -85.08 -142.46 53 A ALA 4 -154.30 -145.81 54 A THR 2 -96.69 -158.78 55 A ALA 4 -85.01 -144.04 56 A THR 2 -97.36 -156.78 57 A THR 2 -98.42 -156.69 57 A ALA 4 -85.19 -142.72 58 A ALA 4 -154.35 -146.12 Leukosialin (CD43) fragment Tumor Associated Mucin Motif from CD43 protein 1 N N 2 N N 2 N N 2 N N covale 1.334 both A ACE 0 A C ACE 1 1_555 A SER 1 A N SER 2 1_555 covale 1.410 one O-Glycosylation A SER 1 A OG SER 2 1_555 A A2G 7 B C1 A2G 1_555 covale 1.418 one O-Glycosylation A THR 2 A OG1 THR 3 1_555 A A2G 10 C C1 A2G 1_555 covale 1.420 one O-Glycosylation A THR 3 A OG1 THR 4 1_555 A A2G 13 D C1 A2G 1_555 glycoprotein, immune system Leukosialin, CD43, Mucin glycoprotein, glycoprotein, immune system 1KYJ PDB 1 1KYJ 0 5 1KYJ 0 5 1KYJ A 1 1 6