1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Czajlik, A. Mesko, E. Penke, B. Perczel, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking UK J.Pept.Sci. JPSIEI 1225 1075-2617 8 151 171 10.1002/psc.380 11991205 Investigation of penetratin peptides. Part 1. The environment dependent conformational properties of penetratin and two of its derivatives. 2002 10.2210/pdb1kz2/pdb pdb_00001kz2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2175.709 Antennapedia protein W6F, W14F 1 syn polymer no no RQIKIFFQNRRMKFKK RQIKIFFQNRRMKFKK A polypeptide(L) n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-02-20 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details 1HOM contains the entire homeodomain third helix of Antennapedia homeodomain third helix of Antennapedia homeodomain derivative, 4 deletions RCSB Y RCSB 2002-02-06 REL REL This sequence was synthetized in solid-phase using the Boc-chemistry. The sequence of this peptide is based on a sequence naturally found in Drosophila melanogaster (fruit fly). sample This structure was determined using standard 2D homonuclear techniques. structures with the least restraint violations,structures with the lowest energy 50 39 2D NOESY 3 ambient 300 K the structures are based on a total of 410 NOE-derived distance restraints simulated annealing and molecular dynamics 1 fewest violations,lowest energy 1.5 mM peptide; 90% TFEd2, 10% D2O 90% TFEd2, 10% D2O San Diego, MSI processing Felix 97.2 San Diego, MSI data analysis Felix 97.2 BRUNGER refinement X-PLOR 3.851 BRUNGER structure solution X-PLOR 3.851 500 Bruker DRX ARG 1 n 1 ARG 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A LYS 4 n 4 LYS 4 A ILE 5 n 5 ILE 5 A PHE 6 n 6 PHE 6 A PHE 7 n 7 PHE 7 A GLN 8 n 8 GLN 8 A ASN 9 n 9 ASN 9 A ARG 10 n 10 ARG 10 A ARG 11 n 11 ARG 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A PHE 14 n 14 PHE 14 A LYS 15 n 15 LYS 15 A LYS 16 n 16 LYS 16 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H LYS GLN 4 8 1.28 1 A A O H PHE ARG 7 10 1.39 1 A A O N LYS GLN 4 8 2.16 2 A A O H LYS GLN 4 8 1.19 2 A A O N LYS GLN 4 8 2.15 3 A A O H LYS GLN 4 8 1.17 3 A A O N LYS GLN 4 8 2.12 4 A A O H LYS GLN 4 8 1.18 4 A A O H PHE ARG 7 10 1.60 4 A A O N LYS GLN 4 8 2.14 5 A A O H LYS GLN 4 8 1.23 5 A A O H PHE ARG 7 10 1.54 5 A A O N LYS GLN 4 8 2.16 6 A A O H LYS GLN 4 8 1.33 6 A A O H PHE ARG 7 10 1.40 7 A A O H LYS GLN 4 8 1.33 7 A A O H PHE ARG 7 10 1.40 7 A A O H GLN ILE 2 5 1.54 8 A A O H LYS GLN 4 8 1.18 8 A A O N LYS GLN 4 8 2.12 9 A A O H LYS GLN 4 8 1.31 9 A A O H PHE ARG 7 10 1.41 9 A A O N LYS GLN 4 8 2.19 10 A A O H LYS GLN 4 8 1.32 10 A A O H PHE ARG 7 10 1.35 10 A A O H MET LYS 12 16 1.44 10 A A O N LYS GLN 4 8 2.15 11 A A O H LYS GLN 4 8 1.27 11 A A O H PHE ARG 7 10 1.38 11 A A O N LYS GLN 4 8 2.12 12 A A O H LYS GLN 4 8 1.32 12 A A O H PHE ARG 7 10 1.36 12 A A O HZ3 ARG LYS 11 15 1.58 12 A A O N LYS GLN 4 8 2.19 13 A A O H LYS GLN 4 8 1.34 13 A A O H PHE ARG 7 10 1.35 14 A A O H LYS GLN 4 8 1.23 14 A A O HZ2 ARG LYS 11 15 1.50 14 A A O H PHE ARG 7 10 1.53 14 A A O N LYS GLN 4 8 2.16 15 A A O H LYS GLN 4 8 1.30 15 A A O H PHE ARG 7 10 1.41 15 A A O N LYS GLN 4 8 2.18 16 A A O H LYS GLN 4 8 1.31 16 A A O H PHE ARG 7 10 1.39 16 A A O N LYS GLN 4 8 2.18 17 A A O H LYS GLN 4 8 1.23 17 A A O H PHE ARG 7 10 1.54 17 A A O N LYS GLN 4 8 2.17 18 A A O H LYS GLN 4 8 1.17 18 A A O N LYS GLN 4 8 2.13 19 A A O H LYS GLN 4 8 1.31 19 A A O H PHE ARG 7 10 1.37 19 A A O N LYS GLN 4 8 2.18 20 A A O H LYS GLN 4 8 1.30 20 A A O H PHE ARG 7 10 1.35 20 A A O N LYS GLN 4 8 2.17 21 A A O H LYS GLN 4 8 1.21 21 A A O H PHE ARG 7 10 1.57 21 A A O N LYS GLN 4 8 2.14 22 A A O H LYS GLN 4 8 1.19 22 A A O H PHE ARG 7 10 1.59 22 A A O N LYS GLN 4 8 2.14 23 A A O H LYS GLN 4 8 1.20 23 A A O H PHE ARG 7 10 1.58 23 A A O N LYS GLN 4 8 2.15 24 A A O H LYS GLN 4 8 1.20 24 A A O H PHE ARG 7 10 1.57 24 A A O N LYS GLN 4 8 2.15 25 A A O H LYS GLN 4 8 1.33 25 A A O H PHE ARG 7 10 1.35 25 A A O N LYS GLN 4 8 2.19 26 A A O H LYS GLN 4 8 1.18 26 A A O N LYS GLN 4 8 2.13 27 A A O H LYS GLN 4 8 1.32 27 A A O H PHE ARG 7 10 1.34 27 A A O N LYS GLN 4 8 2.19 28 A A O H LYS GLN 4 8 1.15 28 A A O N LYS GLN 4 8 2.09 29 A A O H LYS GLN 4 8 1.18 29 A A O H PHE ARG 7 10 1.55 29 A A O N LYS GLN 4 8 2.13 30 A A O H LYS GLN 4 8 1.21 30 A A O H PHE ARG 7 10 1.55 30 A A O N LYS GLN 4 8 2.16 31 A A O H LYS GLN 4 8 1.23 31 A A O H PHE ARG 7 10 1.55 31 A A O N LYS GLN 4 8 2.17 32 A A O H LYS GLN 4 8 1.31 32 A A O H PHE ARG 7 10 1.39 32 A A O H GLN ILE 2 5 1.57 32 A A O N LYS GLN 4 8 2.19 33 A A O H LYS GLN 4 8 1.30 33 A A O H PHE ARG 7 10 1.40 33 A A O N LYS GLN 4 8 2.18 34 A A O H LYS GLN 4 8 1.24 34 A A O H PHE ARG 7 10 1.54 34 A A O N LYS GLN 4 8 2.18 35 A A O H LYS GLN 4 8 1.24 35 A A O H PHE ARG 7 10 1.54 35 A A O N LYS GLN 4 8 2.17 36 A A O H LYS GLN 4 8 1.33 36 A A O H PHE ARG 7 10 1.39 37 A A O H LYS GLN 4 8 1.22 37 A A O H PHE ARG 7 10 1.56 37 A A O N LYS GLN 4 8 2.16 38 A A O H LYS GLN 4 8 1.32 38 A A O H PHE ARG 7 10 1.34 38 A A O N LYS GLN 4 8 2.18 39 A A O H LYS GLN 4 8 1.31 39 A A O H PHE ARG 7 10 1.35 39 A A O N LYS GLN 4 8 2.19 1 A ARG 1 0.239 SIDE CHAIN 1 A ARG 10 0.250 SIDE CHAIN 1 A ARG 11 0.297 SIDE CHAIN 2 A ARG 1 0.300 SIDE CHAIN 2 A ARG 10 0.216 SIDE CHAIN 2 A ARG 11 0.194 SIDE CHAIN 3 A ARG 1 0.302 SIDE CHAIN 3 A ARG 10 0.302 SIDE CHAIN 3 A ARG 11 0.293 SIDE CHAIN 4 A ARG 1 0.250 SIDE CHAIN 4 A ARG 10 0.238 SIDE CHAIN 4 A ARG 11 0.184 SIDE CHAIN 5 A ARG 1 0.291 SIDE CHAIN 5 A ARG 10 0.295 SIDE CHAIN 5 A ARG 11 0.199 SIDE CHAIN 6 A ARG 1 0.246 SIDE CHAIN 6 A ARG 10 0.172 SIDE CHAIN 6 A ARG 11 0.294 SIDE CHAIN 7 A ARG 1 0.276 SIDE CHAIN 7 A ARG 10 0.270 SIDE CHAIN 7 A ARG 11 0.250 SIDE CHAIN 8 A ARG 1 0.304 SIDE CHAIN 8 A ARG 10 0.268 SIDE CHAIN 8 A ARG 11 0.185 SIDE CHAIN 9 A ARG 1 0.222 SIDE CHAIN 9 A ARG 10 0.283 SIDE CHAIN 9 A ARG 11 0.315 SIDE CHAIN 10 A ARG 1 0.298 SIDE CHAIN 10 A ARG 10 0.269 SIDE CHAIN 10 A ARG 11 0.255 SIDE CHAIN 11 A ARG 1 0.287 SIDE CHAIN 11 A ARG 10 0.266 SIDE CHAIN 11 A ARG 11 0.268 SIDE CHAIN 12 A ARG 1 0.318 SIDE CHAIN 12 A ARG 10 0.287 SIDE CHAIN 12 A ARG 11 0.304 SIDE CHAIN 13 A ARG 1 0.202 SIDE CHAIN 13 A ARG 10 0.298 SIDE CHAIN 13 A ARG 11 0.315 SIDE CHAIN 14 A ARG 1 0.304 SIDE CHAIN 14 A ARG 10 0.293 SIDE CHAIN 14 A ARG 11 0.281 SIDE CHAIN 15 A ARG 1 0.297 SIDE CHAIN 15 A ARG 10 0.257 SIDE CHAIN 15 A ARG 11 0.243 SIDE CHAIN 16 A ARG 1 0.308 SIDE CHAIN 16 A ARG 10 0.300 SIDE CHAIN 16 A ARG 11 0.216 SIDE CHAIN 17 A ARG 1 0.220 SIDE CHAIN 17 A ARG 10 0.313 SIDE CHAIN 17 A ARG 11 0.209 SIDE CHAIN 18 A ARG 1 0.251 SIDE CHAIN 18 A ARG 10 0.263 SIDE CHAIN 18 A ARG 11 0.202 SIDE CHAIN 19 A ARG 1 0.231 SIDE CHAIN 19 A ARG 10 0.268 SIDE CHAIN 19 A ARG 11 0.299 SIDE CHAIN 20 A ARG 1 0.307 SIDE CHAIN 20 A ARG 10 0.310 SIDE CHAIN 20 A ARG 11 0.242 SIDE CHAIN 21 A ARG 1 0.252 SIDE CHAIN 21 A ARG 10 0.312 SIDE CHAIN 21 A ARG 11 0.196 SIDE CHAIN 22 A ARG 1 0.305 SIDE CHAIN 22 A ARG 10 0.296 SIDE CHAIN 22 A ARG 11 0.235 SIDE CHAIN 23 A ARG 1 0.317 SIDE CHAIN 23 A ARG 10 0.214 SIDE CHAIN 23 A ARG 11 0.199 SIDE CHAIN 24 A ARG 1 0.281 SIDE CHAIN 24 A ARG 10 0.297 SIDE CHAIN 24 A ARG 11 0.226 SIDE CHAIN 25 A ARG 1 0.282 SIDE CHAIN 25 A ARG 10 0.310 SIDE CHAIN 25 A ARG 11 0.313 SIDE CHAIN 26 A ARG 1 0.293 SIDE CHAIN 26 A ARG 10 0.302 SIDE CHAIN 26 A ARG 11 0.206 SIDE CHAIN 27 A ARG 1 0.271 SIDE CHAIN 27 A ARG 10 0.313 SIDE CHAIN 27 A ARG 11 0.305 SIDE CHAIN 28 A ARG 1 0.304 SIDE CHAIN 28 A ARG 10 0.302 SIDE CHAIN 28 A ARG 11 0.191 SIDE CHAIN 29 A ARG 1 0.219 SIDE CHAIN 29 A ARG 10 0.223 SIDE CHAIN 29 A ARG 11 0.206 SIDE CHAIN 30 A ARG 1 0.271 SIDE CHAIN 30 A ARG 10 0.286 SIDE CHAIN 30 A ARG 11 0.206 SIDE CHAIN 31 A ARG 1 0.242 SIDE CHAIN 31 A ARG 10 0.308 SIDE CHAIN 31 A ARG 11 0.273 SIDE CHAIN 32 A ARG 1 0.206 SIDE CHAIN 32 A ARG 10 0.214 SIDE CHAIN 32 A ARG 11 0.281 SIDE CHAIN 33 A ARG 1 0.246 SIDE CHAIN 33 A ARG 10 0.226 SIDE CHAIN 33 A ARG 11 0.315 SIDE CHAIN 34 A ARG 1 0.313 SIDE CHAIN 34 A ARG 10 0.311 SIDE CHAIN 34 A ARG 11 0.201 SIDE CHAIN 35 A ARG 1 0.250 SIDE CHAIN 35 A ARG 10 0.248 SIDE CHAIN 35 A ARG 11 0.255 SIDE CHAIN 36 A ARG 1 0.209 SIDE CHAIN 36 A ARG 10 0.302 SIDE CHAIN 36 A ARG 11 0.315 SIDE CHAIN 37 A ARG 1 0.279 SIDE CHAIN 37 A ARG 10 0.225 SIDE CHAIN 37 A ARG 11 0.287 SIDE CHAIN 38 A ARG 1 0.264 SIDE CHAIN 38 A ARG 10 0.271 SIDE CHAIN 38 A ARG 11 0.308 SIDE CHAIN 39 A ARG 1 0.215 SIDE CHAIN 39 A ARG 10 0.238 SIDE CHAIN 39 A ARG 11 0.221 SIDE CHAIN 1 A GLN 2 -149.42 -59.33 1 A ASN 9 -59.92 -9.14 2 A GLN 2 -135.27 -40.96 3 A GLN 2 -149.27 -60.48 4 A GLN 2 -150.26 -54.83 5 A GLN 2 -137.34 -40.60 5 A ASN 9 -59.85 -9.25 6 A GLN 2 -150.27 -56.55 6 A ASN 9 -59.73 -9.77 8 A GLN 2 -137.76 -37.23 9 A GLN 2 -148.46 -60.12 9 A ASN 9 -59.71 -9.55 10 A ASN 9 -59.65 -9.92 10 A LYS 15 -137.27 -34.98 11 A GLN 2 -147.74 -58.26 12 A GLN 2 -146.04 -60.11 13 A GLN 2 -137.90 -36.35 14 A GLN 2 -148.49 -61.49 15 A GLN 2 -148.32 -60.14 16 A GLN 2 -137.96 -42.55 17 A GLN 2 -140.20 -42.28 17 A ASN 9 -59.47 -9.53 18 A GLN 2 -145.42 -59.80 18 A LYS 15 -140.32 10.37 19 A GLN 2 -143.91 -42.02 20 A GLN 2 -148.56 -60.08 20 A ASN 9 -59.84 -9.77 21 A GLN 2 -149.19 -60.26 22 A GLN 2 -137.83 -35.78 23 A GLN 2 -149.07 -60.82 24 A GLN 2 -137.38 -43.81 24 A LYS 15 -140.25 10.16 25 A GLN 2 -140.75 -42.37 26 A GLN 2 -149.50 -60.86 27 A GLN 2 -143.45 -35.37 28 A GLN 2 -137.98 -41.31 28 A ILE 3 -39.11 -39.86 29 A GLN 2 -148.65 -62.31 30 A GLN 2 -139.67 -37.57 31 A GLN 2 -140.00 -39.84 32 A ASN 9 -59.86 -9.38 33 A GLN 2 -146.81 -60.76 34 A GLN 2 -140.35 -35.85 35 A GLN 2 -141.01 -35.30 35 A ASN 9 -59.92 -9.59 35 A LYS 15 -141.25 10.76 36 A GLN 2 -142.82 -34.16 37 A GLN 2 -149.39 -55.52 38 A GLN 2 -147.49 -60.13 39 A GLN 2 -136.42 -44.12 39 A LYS 15 -140.31 10.77 Solution structure of the third helix of Antennapedia homeodomain derivative [W6F,W14F] 1 N N A GLN 2 A GLN 2 HELX_P A MET 12 A MET 12 1 1 11 DNA BINDING PROTEIN irregular helix, turn-like parts, DNA BINDING PROTEIN ZEN1_DROME UNP 1 50 P09089 RQIKIWFQNRRMKWKK 50 65 1KZ2 1 16 P09089 A 1 1 16 1 TRP engineered mutation PHE 6 1KZ2 A P09089 UNP 55 6 1 TRP engineered mutation PHE 14 1KZ2 A P09089 UNP 63 14