1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Czajlik, A.
Mesko, E.
Penke, B.
Perczel, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
UK
J.Pept.Sci.
JPSIEI
1225
1075-2617
8
151
171
10.1002/psc.380
11991205
Investigation of penetratin peptides. Part 1. The environment dependent conformational properties of penetratin and two of its derivatives.
2002
10.2210/pdb1kz2/pdb
pdb_00001kz2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2175.709
Antennapedia protein
W6F, W14F
1
syn
polymer
no
no
RQIKIFFQNRRMKFKK
RQIKIFFQNRRMKFKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-02-20
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
1HOM contains the entire homeodomain
third helix of Antennapedia homeodomain
third helix of Antennapedia homeodomain derivative, 4 deletions
RCSB
Y
RCSB
2002-02-06
REL
REL
This sequence was synthetized in solid-phase using the Boc-chemistry. The sequence of this peptide is based on a sequence naturally found in Drosophila melanogaster (fruit fly).
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations,structures with the lowest energy
50
39
2D NOESY
3
ambient
300
K
the structures are based on a total of 410 NOE-derived
distance restraints
simulated annealing and molecular dynamics
1
fewest violations,lowest energy
1.5 mM peptide; 90% TFEd2, 10% D2O
90% TFEd2, 10% D2O
San Diego, MSI
processing
Felix
97.2
San Diego, MSI
data analysis
Felix
97.2
BRUNGER
refinement
X-PLOR
3.851
BRUNGER
structure solution
X-PLOR
3.851
500
Bruker
DRX
ARG
1
n
1
ARG
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
LYS
4
n
4
LYS
4
A
ILE
5
n
5
ILE
5
A
PHE
6
n
6
PHE
6
A
PHE
7
n
7
PHE
7
A
GLN
8
n
8
GLN
8
A
ASN
9
n
9
ASN
9
A
ARG
10
n
10
ARG
10
A
ARG
11
n
11
ARG
11
A
MET
12
n
12
MET
12
A
LYS
13
n
13
LYS
13
A
PHE
14
n
14
PHE
14
A
LYS
15
n
15
LYS
15
A
LYS
16
n
16
LYS
16
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
LYS
GLN
4
8
1.28
1
A
A
O
H
PHE
ARG
7
10
1.39
1
A
A
O
N
LYS
GLN
4
8
2.16
2
A
A
O
H
LYS
GLN
4
8
1.19
2
A
A
O
N
LYS
GLN
4
8
2.15
3
A
A
O
H
LYS
GLN
4
8
1.17
3
A
A
O
N
LYS
GLN
4
8
2.12
4
A
A
O
H
LYS
GLN
4
8
1.18
4
A
A
O
H
PHE
ARG
7
10
1.60
4
A
A
O
N
LYS
GLN
4
8
2.14
5
A
A
O
H
LYS
GLN
4
8
1.23
5
A
A
O
H
PHE
ARG
7
10
1.54
5
A
A
O
N
LYS
GLN
4
8
2.16
6
A
A
O
H
LYS
GLN
4
8
1.33
6
A
A
O
H
PHE
ARG
7
10
1.40
7
A
A
O
H
LYS
GLN
4
8
1.33
7
A
A
O
H
PHE
ARG
7
10
1.40
7
A
A
O
H
GLN
ILE
2
5
1.54
8
A
A
O
H
LYS
GLN
4
8
1.18
8
A
A
O
N
LYS
GLN
4
8
2.12
9
A
A
O
H
LYS
GLN
4
8
1.31
9
A
A
O
H
PHE
ARG
7
10
1.41
9
A
A
O
N
LYS
GLN
4
8
2.19
10
A
A
O
H
LYS
GLN
4
8
1.32
10
A
A
O
H
PHE
ARG
7
10
1.35
10
A
A
O
H
MET
LYS
12
16
1.44
10
A
A
O
N
LYS
GLN
4
8
2.15
11
A
A
O
H
LYS
GLN
4
8
1.27
11
A
A
O
H
PHE
ARG
7
10
1.38
11
A
A
O
N
LYS
GLN
4
8
2.12
12
A
A
O
H
LYS
GLN
4
8
1.32
12
A
A
O
H
PHE
ARG
7
10
1.36
12
A
A
O
HZ3
ARG
LYS
11
15
1.58
12
A
A
O
N
LYS
GLN
4
8
2.19
13
A
A
O
H
LYS
GLN
4
8
1.34
13
A
A
O
H
PHE
ARG
7
10
1.35
14
A
A
O
H
LYS
GLN
4
8
1.23
14
A
A
O
HZ2
ARG
LYS
11
15
1.50
14
A
A
O
H
PHE
ARG
7
10
1.53
14
A
A
O
N
LYS
GLN
4
8
2.16
15
A
A
O
H
LYS
GLN
4
8
1.30
15
A
A
O
H
PHE
ARG
7
10
1.41
15
A
A
O
N
LYS
GLN
4
8
2.18
16
A
A
O
H
LYS
GLN
4
8
1.31
16
A
A
O
H
PHE
ARG
7
10
1.39
16
A
A
O
N
LYS
GLN
4
8
2.18
17
A
A
O
H
LYS
GLN
4
8
1.23
17
A
A
O
H
PHE
ARG
7
10
1.54
17
A
A
O
N
LYS
GLN
4
8
2.17
18
A
A
O
H
LYS
GLN
4
8
1.17
18
A
A
O
N
LYS
GLN
4
8
2.13
19
A
A
O
H
LYS
GLN
4
8
1.31
19
A
A
O
H
PHE
ARG
7
10
1.37
19
A
A
O
N
LYS
GLN
4
8
2.18
20
A
A
O
H
LYS
GLN
4
8
1.30
20
A
A
O
H
PHE
ARG
7
10
1.35
20
A
A
O
N
LYS
GLN
4
8
2.17
21
A
A
O
H
LYS
GLN
4
8
1.21
21
A
A
O
H
PHE
ARG
7
10
1.57
21
A
A
O
N
LYS
GLN
4
8
2.14
22
A
A
O
H
LYS
GLN
4
8
1.19
22
A
A
O
H
PHE
ARG
7
10
1.59
22
A
A
O
N
LYS
GLN
4
8
2.14
23
A
A
O
H
LYS
GLN
4
8
1.20
23
A
A
O
H
PHE
ARG
7
10
1.58
23
A
A
O
N
LYS
GLN
4
8
2.15
24
A
A
O
H
LYS
GLN
4
8
1.20
24
A
A
O
H
PHE
ARG
7
10
1.57
24
A
A
O
N
LYS
GLN
4
8
2.15
25
A
A
O
H
LYS
GLN
4
8
1.33
25
A
A
O
H
PHE
ARG
7
10
1.35
25
A
A
O
N
LYS
GLN
4
8
2.19
26
A
A
O
H
LYS
GLN
4
8
1.18
26
A
A
O
N
LYS
GLN
4
8
2.13
27
A
A
O
H
LYS
GLN
4
8
1.32
27
A
A
O
H
PHE
ARG
7
10
1.34
27
A
A
O
N
LYS
GLN
4
8
2.19
28
A
A
O
H
LYS
GLN
4
8
1.15
28
A
A
O
N
LYS
GLN
4
8
2.09
29
A
A
O
H
LYS
GLN
4
8
1.18
29
A
A
O
H
PHE
ARG
7
10
1.55
29
A
A
O
N
LYS
GLN
4
8
2.13
30
A
A
O
H
LYS
GLN
4
8
1.21
30
A
A
O
H
PHE
ARG
7
10
1.55
30
A
A
O
N
LYS
GLN
4
8
2.16
31
A
A
O
H
LYS
GLN
4
8
1.23
31
A
A
O
H
PHE
ARG
7
10
1.55
31
A
A
O
N
LYS
GLN
4
8
2.17
32
A
A
O
H
LYS
GLN
4
8
1.31
32
A
A
O
H
PHE
ARG
7
10
1.39
32
A
A
O
H
GLN
ILE
2
5
1.57
32
A
A
O
N
LYS
GLN
4
8
2.19
33
A
A
O
H
LYS
GLN
4
8
1.30
33
A
A
O
H
PHE
ARG
7
10
1.40
33
A
A
O
N
LYS
GLN
4
8
2.18
34
A
A
O
H
LYS
GLN
4
8
1.24
34
A
A
O
H
PHE
ARG
7
10
1.54
34
A
A
O
N
LYS
GLN
4
8
2.18
35
A
A
O
H
LYS
GLN
4
8
1.24
35
A
A
O
H
PHE
ARG
7
10
1.54
35
A
A
O
N
LYS
GLN
4
8
2.17
36
A
A
O
H
LYS
GLN
4
8
1.33
36
A
A
O
H
PHE
ARG
7
10
1.39
37
A
A
O
H
LYS
GLN
4
8
1.22
37
A
A
O
H
PHE
ARG
7
10
1.56
37
A
A
O
N
LYS
GLN
4
8
2.16
38
A
A
O
H
LYS
GLN
4
8
1.32
38
A
A
O
H
PHE
ARG
7
10
1.34
38
A
A
O
N
LYS
GLN
4
8
2.18
39
A
A
O
H
LYS
GLN
4
8
1.31
39
A
A
O
H
PHE
ARG
7
10
1.35
39
A
A
O
N
LYS
GLN
4
8
2.19
1
A
ARG
1
0.239
SIDE CHAIN
1
A
ARG
10
0.250
SIDE CHAIN
1
A
ARG
11
0.297
SIDE CHAIN
2
A
ARG
1
0.300
SIDE CHAIN
2
A
ARG
10
0.216
SIDE CHAIN
2
A
ARG
11
0.194
SIDE CHAIN
3
A
ARG
1
0.302
SIDE CHAIN
3
A
ARG
10
0.302
SIDE CHAIN
3
A
ARG
11
0.293
SIDE CHAIN
4
A
ARG
1
0.250
SIDE CHAIN
4
A
ARG
10
0.238
SIDE CHAIN
4
A
ARG
11
0.184
SIDE CHAIN
5
A
ARG
1
0.291
SIDE CHAIN
5
A
ARG
10
0.295
SIDE CHAIN
5
A
ARG
11
0.199
SIDE CHAIN
6
A
ARG
1
0.246
SIDE CHAIN
6
A
ARG
10
0.172
SIDE CHAIN
6
A
ARG
11
0.294
SIDE CHAIN
7
A
ARG
1
0.276
SIDE CHAIN
7
A
ARG
10
0.270
SIDE CHAIN
7
A
ARG
11
0.250
SIDE CHAIN
8
A
ARG
1
0.304
SIDE CHAIN
8
A
ARG
10
0.268
SIDE CHAIN
8
A
ARG
11
0.185
SIDE CHAIN
9
A
ARG
1
0.222
SIDE CHAIN
9
A
ARG
10
0.283
SIDE CHAIN
9
A
ARG
11
0.315
SIDE CHAIN
10
A
ARG
1
0.298
SIDE CHAIN
10
A
ARG
10
0.269
SIDE CHAIN
10
A
ARG
11
0.255
SIDE CHAIN
11
A
ARG
1
0.287
SIDE CHAIN
11
A
ARG
10
0.266
SIDE CHAIN
11
A
ARG
11
0.268
SIDE CHAIN
12
A
ARG
1
0.318
SIDE CHAIN
12
A
ARG
10
0.287
SIDE CHAIN
12
A
ARG
11
0.304
SIDE CHAIN
13
A
ARG
1
0.202
SIDE CHAIN
13
A
ARG
10
0.298
SIDE CHAIN
13
A
ARG
11
0.315
SIDE CHAIN
14
A
ARG
1
0.304
SIDE CHAIN
14
A
ARG
10
0.293
SIDE CHAIN
14
A
ARG
11
0.281
SIDE CHAIN
15
A
ARG
1
0.297
SIDE CHAIN
15
A
ARG
10
0.257
SIDE CHAIN
15
A
ARG
11
0.243
SIDE CHAIN
16
A
ARG
1
0.308
SIDE CHAIN
16
A
ARG
10
0.300
SIDE CHAIN
16
A
ARG
11
0.216
SIDE CHAIN
17
A
ARG
1
0.220
SIDE CHAIN
17
A
ARG
10
0.313
SIDE CHAIN
17
A
ARG
11
0.209
SIDE CHAIN
18
A
ARG
1
0.251
SIDE CHAIN
18
A
ARG
10
0.263
SIDE CHAIN
18
A
ARG
11
0.202
SIDE CHAIN
19
A
ARG
1
0.231
SIDE CHAIN
19
A
ARG
10
0.268
SIDE CHAIN
19
A
ARG
11
0.299
SIDE CHAIN
20
A
ARG
1
0.307
SIDE CHAIN
20
A
ARG
10
0.310
SIDE CHAIN
20
A
ARG
11
0.242
SIDE CHAIN
21
A
ARG
1
0.252
SIDE CHAIN
21
A
ARG
10
0.312
SIDE CHAIN
21
A
ARG
11
0.196
SIDE CHAIN
22
A
ARG
1
0.305
SIDE CHAIN
22
A
ARG
10
0.296
SIDE CHAIN
22
A
ARG
11
0.235
SIDE CHAIN
23
A
ARG
1
0.317
SIDE CHAIN
23
A
ARG
10
0.214
SIDE CHAIN
23
A
ARG
11
0.199
SIDE CHAIN
24
A
ARG
1
0.281
SIDE CHAIN
24
A
ARG
10
0.297
SIDE CHAIN
24
A
ARG
11
0.226
SIDE CHAIN
25
A
ARG
1
0.282
SIDE CHAIN
25
A
ARG
10
0.310
SIDE CHAIN
25
A
ARG
11
0.313
SIDE CHAIN
26
A
ARG
1
0.293
SIDE CHAIN
26
A
ARG
10
0.302
SIDE CHAIN
26
A
ARG
11
0.206
SIDE CHAIN
27
A
ARG
1
0.271
SIDE CHAIN
27
A
ARG
10
0.313
SIDE CHAIN
27
A
ARG
11
0.305
SIDE CHAIN
28
A
ARG
1
0.304
SIDE CHAIN
28
A
ARG
10
0.302
SIDE CHAIN
28
A
ARG
11
0.191
SIDE CHAIN
29
A
ARG
1
0.219
SIDE CHAIN
29
A
ARG
10
0.223
SIDE CHAIN
29
A
ARG
11
0.206
SIDE CHAIN
30
A
ARG
1
0.271
SIDE CHAIN
30
A
ARG
10
0.286
SIDE CHAIN
30
A
ARG
11
0.206
SIDE CHAIN
31
A
ARG
1
0.242
SIDE CHAIN
31
A
ARG
10
0.308
SIDE CHAIN
31
A
ARG
11
0.273
SIDE CHAIN
32
A
ARG
1
0.206
SIDE CHAIN
32
A
ARG
10
0.214
SIDE CHAIN
32
A
ARG
11
0.281
SIDE CHAIN
33
A
ARG
1
0.246
SIDE CHAIN
33
A
ARG
10
0.226
SIDE CHAIN
33
A
ARG
11
0.315
SIDE CHAIN
34
A
ARG
1
0.313
SIDE CHAIN
34
A
ARG
10
0.311
SIDE CHAIN
34
A
ARG
11
0.201
SIDE CHAIN
35
A
ARG
1
0.250
SIDE CHAIN
35
A
ARG
10
0.248
SIDE CHAIN
35
A
ARG
11
0.255
SIDE CHAIN
36
A
ARG
1
0.209
SIDE CHAIN
36
A
ARG
10
0.302
SIDE CHAIN
36
A
ARG
11
0.315
SIDE CHAIN
37
A
ARG
1
0.279
SIDE CHAIN
37
A
ARG
10
0.225
SIDE CHAIN
37
A
ARG
11
0.287
SIDE CHAIN
38
A
ARG
1
0.264
SIDE CHAIN
38
A
ARG
10
0.271
SIDE CHAIN
38
A
ARG
11
0.308
SIDE CHAIN
39
A
ARG
1
0.215
SIDE CHAIN
39
A
ARG
10
0.238
SIDE CHAIN
39
A
ARG
11
0.221
SIDE CHAIN
1
A
GLN
2
-149.42
-59.33
1
A
ASN
9
-59.92
-9.14
2
A
GLN
2
-135.27
-40.96
3
A
GLN
2
-149.27
-60.48
4
A
GLN
2
-150.26
-54.83
5
A
GLN
2
-137.34
-40.60
5
A
ASN
9
-59.85
-9.25
6
A
GLN
2
-150.27
-56.55
6
A
ASN
9
-59.73
-9.77
8
A
GLN
2
-137.76
-37.23
9
A
GLN
2
-148.46
-60.12
9
A
ASN
9
-59.71
-9.55
10
A
ASN
9
-59.65
-9.92
10
A
LYS
15
-137.27
-34.98
11
A
GLN
2
-147.74
-58.26
12
A
GLN
2
-146.04
-60.11
13
A
GLN
2
-137.90
-36.35
14
A
GLN
2
-148.49
-61.49
15
A
GLN
2
-148.32
-60.14
16
A
GLN
2
-137.96
-42.55
17
A
GLN
2
-140.20
-42.28
17
A
ASN
9
-59.47
-9.53
18
A
GLN
2
-145.42
-59.80
18
A
LYS
15
-140.32
10.37
19
A
GLN
2
-143.91
-42.02
20
A
GLN
2
-148.56
-60.08
20
A
ASN
9
-59.84
-9.77
21
A
GLN
2
-149.19
-60.26
22
A
GLN
2
-137.83
-35.78
23
A
GLN
2
-149.07
-60.82
24
A
GLN
2
-137.38
-43.81
24
A
LYS
15
-140.25
10.16
25
A
GLN
2
-140.75
-42.37
26
A
GLN
2
-149.50
-60.86
27
A
GLN
2
-143.45
-35.37
28
A
GLN
2
-137.98
-41.31
28
A
ILE
3
-39.11
-39.86
29
A
GLN
2
-148.65
-62.31
30
A
GLN
2
-139.67
-37.57
31
A
GLN
2
-140.00
-39.84
32
A
ASN
9
-59.86
-9.38
33
A
GLN
2
-146.81
-60.76
34
A
GLN
2
-140.35
-35.85
35
A
GLN
2
-141.01
-35.30
35
A
ASN
9
-59.92
-9.59
35
A
LYS
15
-141.25
10.76
36
A
GLN
2
-142.82
-34.16
37
A
GLN
2
-149.39
-55.52
38
A
GLN
2
-147.49
-60.13
39
A
GLN
2
-136.42
-44.12
39
A
LYS
15
-140.31
10.77
Solution structure of the third helix of Antennapedia homeodomain derivative [W6F,W14F]
1
N
N
A
GLN
2
A
GLN
2
HELX_P
A
MET
12
A
MET
12
1
1
11
DNA BINDING PROTEIN
irregular helix, turn-like parts, DNA BINDING PROTEIN
ZEN1_DROME
UNP
1
50
P09089
RQIKIWFQNRRMKWKK
50
65
1KZ2
1
16
P09089
A
1
1
16
1
TRP
engineered mutation
PHE
6
1KZ2
A
P09089
UNP
55
6
1
TRP
engineered mutation
PHE
14
1KZ2
A
P09089
UNP
63
14