1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Czajlik, A.
Mesko, E.
Penke, B.
Perczel, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
UK
J.Pept.Sci.
JPSIEI
1225
1075-2617
8
151
171
10.1002/psc.380
11991205
Investigation of penetratin peptides. Part 1. The environment dependent conformational properties of penetratin and two of its derivatives.
2002
10.2210/pdb1kz5/pdb
pdb_00001kz5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4 residue deletion
1723.160
Antennapedia protein
DEL(Q57,N58,R60,M61)
1
syn
polymer
no
no
RQIKIWFRKWKK
RQIKIWFRKWKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-02-20
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
1HOM contains the whole Antennapedia homeodomain
third helix of Antennapedia homeodomain
third helix[W6F,W14F] of Antennapedia homeodomain
RCSB
Y
RCSB
2002-02-06
REL
REL
This sequence was synthetized in solid-phase using the Boc-chemistry. The sequence of this peptide is based on a sequence naturally found in Drosophila melanogaster (fruit fly).
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations,structures with the lowest energy
50
16
2D NOESY
3
ambient
300
K
the structures are based on a total of 291 NOE-derived
distance restraints
simulated annealing and molecular dynamics
1
fewest violations,lowest energy
1.5mM peptide; 90% TFEd2, 10% D2O
90% TFEd2, 10% D2O
San Diego, MSI
processing
Felix
97.2
San Diego, MSI
data analysis
Felix
97.2
BRUNGER
refinement
X-PLOR
3.851
BRUNGER
structure solution
X-PLOR
3.851
500
Bruker
DRX
ARG
1
n
1
ARG
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
LYS
4
n
4
LYS
4
A
ILE
5
n
5
ILE
5
A
TRP
6
n
6
TRP
6
A
PHE
7
n
7
PHE
7
A
ARG
8
n
8
ARG
8
A
LYS
9
n
9
LYS
9
A
TRP
10
n
10
TRP
10
A
LYS
11
n
11
LYS
11
A
LYS
12
n
12
LYS
12
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
9
A
A
O
H
TRP
LYS
6
9
1.58
11
A
A
O
H
TRP
LYS
6
9
1.58
16
A
A
O
H
TRP
LYS
6
9
1.59
1
A
ARG
1
0.249
SIDE CHAIN
1
A
ARG
8
0.303
SIDE CHAIN
2
A
ARG
1
0.217
SIDE CHAIN
2
A
ARG
8
0.212
SIDE CHAIN
3
A
ARG
1
0.217
SIDE CHAIN
3
A
ARG
8
0.315
SIDE CHAIN
4
A
ARG
1
0.184
SIDE CHAIN
4
A
ARG
8
0.313
SIDE CHAIN
5
A
ARG
1
0.312
SIDE CHAIN
5
A
ARG
8
0.213
SIDE CHAIN
6
A
ARG
1
0.175
SIDE CHAIN
6
A
ARG
8
0.287
SIDE CHAIN
7
A
ARG
1
0.281
SIDE CHAIN
7
A
ARG
8
0.309
SIDE CHAIN
8
A
ARG
1
0.313
SIDE CHAIN
8
A
ARG
8
0.315
SIDE CHAIN
9
A
ARG
1
0.246
SIDE CHAIN
9
A
ARG
8
0.210
SIDE CHAIN
10
A
ARG
1
0.237
SIDE CHAIN
10
A
ARG
8
0.227
SIDE CHAIN
11
A
ARG
1
0.216
SIDE CHAIN
11
A
ARG
8
0.284
SIDE CHAIN
12
A
ARG
1
0.299
SIDE CHAIN
12
A
ARG
8
0.314
SIDE CHAIN
13
A
ARG
1
0.208
SIDE CHAIN
13
A
ARG
8
0.212
SIDE CHAIN
14
A
ARG
1
0.203
SIDE CHAIN
14
A
ARG
8
0.270
SIDE CHAIN
15
A
ARG
1
0.291
SIDE CHAIN
15
A
ARG
8
0.282
SIDE CHAIN
16
A
ARG
1
0.230
SIDE CHAIN
16
A
ARG
8
0.219
SIDE CHAIN
1
A
ILE
3
39.02
41.22
1
A
LYS
9
-93.75
-70.62
1
A
TRP
10
-86.40
-112.26
1
A
LYS
11
-159.10
38.94
2
A
LYS
9
-96.13
-74.18
2
A
TRP
10
-85.34
-111.46
2
A
LYS
11
-160.23
37.95
3
A
LYS
9
-92.39
-75.75
3
A
TRP
10
-85.35
-111.93
3
A
LYS
11
-159.25
34.97
4
A
ILE
3
39.48
39.58
4
A
LYS
9
-107.99
-76.41
4
A
TRP
10
-90.92
-114.99
4
A
LYS
11
-158.56
36.29
5
A
GLN
2
-138.25
-54.53
5
A
ILE
3
36.49
40.42
5
A
LYS
9
-110.65
-77.97
5
A
TRP
10
-88.50
-111.58
5
A
LYS
11
-166.24
31.53
6
A
ILE
3
36.91
45.44
6
A
LYS
9
-94.94
-71.57
6
A
TRP
10
-88.34
-113.02
6
A
LYS
11
-158.30
38.90
7
A
ILE
3
36.36
42.02
7
A
LYS
9
-103.18
-64.88
7
A
TRP
10
-94.29
-81.47
7
A
LYS
11
-171.85
-45.44
8
A
ILE
3
39.54
40.09
8
A
TRP
10
-86.96
-114.29
8
A
LYS
11
-169.07
33.30
9
A
ILE
3
39.09
36.26
9
A
LYS
9
-119.66
-79.77
9
A
TRP
10
-93.79
-115.58
9
A
LYS
11
-166.32
31.82
10
A
ILE
3
36.49
39.71
10
A
TRP
10
-90.90
-114.58
10
A
LYS
11
-157.94
38.18
11
A
ILE
3
39.59
39.73
11
A
LYS
9
-110.24
-75.79
11
A
TRP
10
-93.23
-117.79
11
A
LYS
11
-165.15
45.97
12
A
ILE
3
37.95
39.85
12
A
TRP
10
-89.18
-115.88
12
A
LYS
11
-169.14
31.98
13
A
GLN
2
-125.34
-60.67
13
A
ILE
3
37.09
44.45
13
A
LYS
9
-99.06
-61.94
13
A
TRP
10
-86.66
-112.86
13
A
LYS
11
-159.57
36.97
14
A
TRP
10
-90.45
-115.29
14
A
LYS
11
-159.91
38.43
15
A
TRP
10
-89.42
-114.39
15
A
LYS
11
-158.79
33.21
16
A
ILE
3
38.31
39.75
16
A
LYS
9
-107.57
-73.51
16
A
TRP
10
-85.58
-111.44
16
A
LYS
11
-165.06
31.75
Solution structure of the third helix of Antennapedia homeodomain derivatives (RQIKIWFRKWKK)
1
N
N
A
LYS
4
A
LYS
4
HELX_P
A
TRP
10
A
TRP
10
1
1
7
DNA BINDING PROTEIN
irregular helix and multiple turn-like structure, flexibility, DNA BINDING PROTEIN
ANTP_DROME
UNP
1
50
P02833
RQIKIWFQNRRMKWKK
50
65
1KZ5
1
12
P02833
A
1
1
12
1
GLN
deletion
1KZ5
A
P02833
UNP
57
1
ASN
deletion
1KZ5
A
P02833
UNP
58
1
ARG
deletion
1KZ5
A
P02833
UNP
60
1
MET
deletion
1KZ5
A
P02833
UNP
61