1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Czajlik, A. Mesko, E. Penke, B. Perczel, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking UK J.Pept.Sci. JPSIEI 1225 1075-2617 8 151 171 10.1002/psc.380 11991205 Investigation of penetratin peptides. Part 1. The environment dependent conformational properties of penetratin and two of its derivatives. 2002 10.2210/pdb1kz5/pdb pdb_00001kz5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 4 residue deletion 1723.160 Antennapedia protein DEL(Q57,N58,R60,M61) 1 syn polymer no no RQIKIWFRKWKK RQIKIWFRKWKK A polypeptide(L) n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-02-20 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details 1HOM contains the whole Antennapedia homeodomain third helix of Antennapedia homeodomain third helix[W6F,W14F] of Antennapedia homeodomain RCSB Y RCSB 2002-02-06 REL REL This sequence was synthetized in solid-phase using the Boc-chemistry. The sequence of this peptide is based on a sequence naturally found in Drosophila melanogaster (fruit fly). sample This structure was determined using standard 2D homonuclear techniques. structures with the least restraint violations,structures with the lowest energy 50 16 2D NOESY 3 ambient 300 K the structures are based on a total of 291 NOE-derived distance restraints simulated annealing and molecular dynamics 1 fewest violations,lowest energy 1.5mM peptide; 90% TFEd2, 10% D2O 90% TFEd2, 10% D2O San Diego, MSI processing Felix 97.2 San Diego, MSI data analysis Felix 97.2 BRUNGER refinement X-PLOR 3.851 BRUNGER structure solution X-PLOR 3.851 500 Bruker DRX ARG 1 n 1 ARG 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A LYS 4 n 4 LYS 4 A ILE 5 n 5 ILE 5 A TRP 6 n 6 TRP 6 A PHE 7 n 7 PHE 7 A ARG 8 n 8 ARG 8 A LYS 9 n 9 LYS 9 A TRP 10 n 10 TRP 10 A LYS 11 n 11 LYS 11 A LYS 12 n 12 LYS 12 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 9 A A O H TRP LYS 6 9 1.58 11 A A O H TRP LYS 6 9 1.58 16 A A O H TRP LYS 6 9 1.59 1 A ARG 1 0.249 SIDE CHAIN 1 A ARG 8 0.303 SIDE CHAIN 2 A ARG 1 0.217 SIDE CHAIN 2 A ARG 8 0.212 SIDE CHAIN 3 A ARG 1 0.217 SIDE CHAIN 3 A ARG 8 0.315 SIDE CHAIN 4 A ARG 1 0.184 SIDE CHAIN 4 A ARG 8 0.313 SIDE CHAIN 5 A ARG 1 0.312 SIDE CHAIN 5 A ARG 8 0.213 SIDE CHAIN 6 A ARG 1 0.175 SIDE CHAIN 6 A ARG 8 0.287 SIDE CHAIN 7 A ARG 1 0.281 SIDE CHAIN 7 A ARG 8 0.309 SIDE CHAIN 8 A ARG 1 0.313 SIDE CHAIN 8 A ARG 8 0.315 SIDE CHAIN 9 A ARG 1 0.246 SIDE CHAIN 9 A ARG 8 0.210 SIDE CHAIN 10 A ARG 1 0.237 SIDE CHAIN 10 A ARG 8 0.227 SIDE CHAIN 11 A ARG 1 0.216 SIDE CHAIN 11 A ARG 8 0.284 SIDE CHAIN 12 A ARG 1 0.299 SIDE CHAIN 12 A ARG 8 0.314 SIDE CHAIN 13 A ARG 1 0.208 SIDE CHAIN 13 A ARG 8 0.212 SIDE CHAIN 14 A ARG 1 0.203 SIDE CHAIN 14 A ARG 8 0.270 SIDE CHAIN 15 A ARG 1 0.291 SIDE CHAIN 15 A ARG 8 0.282 SIDE CHAIN 16 A ARG 1 0.230 SIDE CHAIN 16 A ARG 8 0.219 SIDE CHAIN 1 A ILE 3 39.02 41.22 1 A LYS 9 -93.75 -70.62 1 A TRP 10 -86.40 -112.26 1 A LYS 11 -159.10 38.94 2 A LYS 9 -96.13 -74.18 2 A TRP 10 -85.34 -111.46 2 A LYS 11 -160.23 37.95 3 A LYS 9 -92.39 -75.75 3 A TRP 10 -85.35 -111.93 3 A LYS 11 -159.25 34.97 4 A ILE 3 39.48 39.58 4 A LYS 9 -107.99 -76.41 4 A TRP 10 -90.92 -114.99 4 A LYS 11 -158.56 36.29 5 A GLN 2 -138.25 -54.53 5 A ILE 3 36.49 40.42 5 A LYS 9 -110.65 -77.97 5 A TRP 10 -88.50 -111.58 5 A LYS 11 -166.24 31.53 6 A ILE 3 36.91 45.44 6 A LYS 9 -94.94 -71.57 6 A TRP 10 -88.34 -113.02 6 A LYS 11 -158.30 38.90 7 A ILE 3 36.36 42.02 7 A LYS 9 -103.18 -64.88 7 A TRP 10 -94.29 -81.47 7 A LYS 11 -171.85 -45.44 8 A ILE 3 39.54 40.09 8 A TRP 10 -86.96 -114.29 8 A LYS 11 -169.07 33.30 9 A ILE 3 39.09 36.26 9 A LYS 9 -119.66 -79.77 9 A TRP 10 -93.79 -115.58 9 A LYS 11 -166.32 31.82 10 A ILE 3 36.49 39.71 10 A TRP 10 -90.90 -114.58 10 A LYS 11 -157.94 38.18 11 A ILE 3 39.59 39.73 11 A LYS 9 -110.24 -75.79 11 A TRP 10 -93.23 -117.79 11 A LYS 11 -165.15 45.97 12 A ILE 3 37.95 39.85 12 A TRP 10 -89.18 -115.88 12 A LYS 11 -169.14 31.98 13 A GLN 2 -125.34 -60.67 13 A ILE 3 37.09 44.45 13 A LYS 9 -99.06 -61.94 13 A TRP 10 -86.66 -112.86 13 A LYS 11 -159.57 36.97 14 A TRP 10 -90.45 -115.29 14 A LYS 11 -159.91 38.43 15 A TRP 10 -89.42 -114.39 15 A LYS 11 -158.79 33.21 16 A ILE 3 38.31 39.75 16 A LYS 9 -107.57 -73.51 16 A TRP 10 -85.58 -111.44 16 A LYS 11 -165.06 31.75 Solution structure of the third helix of Antennapedia homeodomain derivatives (RQIKIWFRKWKK) 1 N N A LYS 4 A LYS 4 HELX_P A TRP 10 A TRP 10 1 1 7 DNA BINDING PROTEIN irregular helix and multiple turn-like structure, flexibility, DNA BINDING PROTEIN ANTP_DROME UNP 1 50 P02833 RQIKIWFQNRRMKWKK 50 65 1KZ5 1 12 P02833 A 1 1 12 1 GLN deletion 1KZ5 A P02833 UNP 57 1 ASN deletion 1KZ5 A P02833 UNP 58 1 ARG deletion 1KZ5 A P02833 UNP 60 1 MET deletion 1KZ5 A P02833 UNP 61