1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Engler, A. Stangler, T. Willbold, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C2 H4 O 44.053 ACETYL GROUP non-polymer C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking IX Eur.J.Biochem. EJBCAI 0262 0014-2956 269 3264 3269 10.1046/j.1432-1033.2002.03005.x 12084067 Structure of human immunodeficiency virus type 1 Vpr(34-51) peptide in micelle containing aqueous solution. 2002 10.2210/pdb1kzs/pdb pdb_00001kzs 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2271.578 Vpr PROTEIN RESIDUES 34-51 1 syn polymer no yes (ACE)FPRIWLHNLGQHIYETYG(NH2) XFPRIWLHNLGQHIYETYGX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-08-28 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1kzt is the Structure of human immunodeficiency virus type 1 Vpr(34-51) peptide in DPC micelle containing aqueous solution. 1KZV is the Structure of human immunodeficiency virus type 1 Vpr(34-51) peptide in chloroform methanol. RCSB Y RCSB 2002-02-08 REL REL THIS PEPTIDE WAS Chemically synthesized. IT IS NATURALLY FOUND IN human immunodeficiency virus type 1 (New York-5 isolate) (HIV-1). sample structures with the least restraint violations, structures with the lowest energy 97 20 2D NOESY 0 ambient 298 K structures were calculated using floating chirality. simulated annealing 1 lowest energy 2 mM Vpr(34-51); 50 % H2O, 50 % TFE 50 % H2O, 50 % TFE Brunger structure solution X-PLOR 3.851 Varian collection VNMR 5.3 SpinUp Inc. data analysis NDEE Brunger refinement X-PLOR 3.851 600 Varian INOVA ACE 33 n 1 ACE 33 A PHE 34 n 2 PHE 34 A PRO 35 n 3 PRO 35 A ARG 36 n 4 ARG 36 A ILE 37 n 5 ILE 37 A TRP 38 n 6 TRP 38 A LEU 39 n 7 LEU 39 A HIS 40 n 8 HIS 40 A ASN 41 n 9 ASN 41 A LEU 42 n 10 LEU 42 A GLY 43 n 11 GLY 43 A GLN 44 n 12 GLN 44 A HIS 45 n 13 HIS 45 A ILE 46 n 14 ILE 46 A TYR 47 n 15 TYR 47 A GLU 48 n 16 GLU 48 A THR 49 n 17 THR 49 A TYR 50 n 18 TYR 50 A GLY 51 n 19 GLY 51 A GLY 51 n 20 NH2 52 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 14 A A O H ASN GLN 41 44 1.56 1 A ARG 36 0.230 SIDE CHAIN 2 A ARG 36 0.301 SIDE CHAIN 3 A ARG 36 0.309 SIDE CHAIN 4 A ARG 36 0.215 SIDE CHAIN 5 A ARG 36 0.202 SIDE CHAIN 6 A ARG 36 0.210 SIDE CHAIN 7 A ARG 36 0.317 SIDE CHAIN 8 A ARG 36 0.304 SIDE CHAIN 9 A ARG 36 0.307 SIDE CHAIN 10 A ARG 36 0.277 SIDE CHAIN 11 A ARG 36 0.306 SIDE CHAIN 12 A ARG 36 0.115 SIDE CHAIN 13 A ARG 36 0.153 SIDE CHAIN 14 A ARG 36 0.303 SIDE CHAIN 15 A ARG 36 0.185 SIDE CHAIN 16 A ARG 36 0.239 SIDE CHAIN 17 A ARG 36 0.088 SIDE CHAIN 18 A ARG 36 0.310 SIDE CHAIN 19 A ARG 36 0.273 SIDE CHAIN 20 A ARG 36 0.095 SIDE CHAIN 12 A ARG 36 72.27 -0.64 Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Peptide in Aqueous TFE Solution 1 N N A PHE 34 A PHE 2 HELX_P A ARG 36 A ARG 4 5 1 3 A ILE 37 A ILE 5 HELX_P A GLY 51 A GLY 19 1 2 15 covale 1.305 both A ACE 33 A C ACE 1 1_555 A PHE 34 A N PHE 2 1_555 covale 1.305 both A GLY 51 A C GLY 19 1_555 A NH2 52 A N NH2 20 1_555 VIRAL PROTEIN HIV-1, Vpr, solution structure, TFE, Viral protein VPR_HV1N5 UNP 1 34 P12520 FPRIWLHNLGQHIYETYG 34 51 1KZS 34 51 P12520 A 1 2 19 BINDING SITE FOR RESIDUE NH2 A 52 A NH2 52 Software 2 A TYR 50 A TYR 18 2 1_555 A GLY 51 A GLY 19 2 1_555