1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Engler, A.
Stangler, T.
Willbold, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
269
3264
3269
10.1046/j.1432-1033.2002.03005.x
12084067
Structure of human immunodeficiency virus type 1 Vpr(34-51) peptide in micelle containing aqueous solution.
2002
10.2210/pdb1kzv/pdb
pdb_00001kzv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2271.578
Vpr PROTEIN
RESIDUES 34-51
1
syn
polymer
no
yes
(ACE)FPRIWLHNLGQHIYETYG(NH2)
XFPRIWLHNLGQHIYETYGX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-08-28
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1kzs is the Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Peptide in Aqueous TFE Solution.
1kzt is the Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Peptide in DPC Micelle Containing Aqueous Solution.
RCSB
Y
RCSB
2002-02-08
REL
REL
THIS PEPTIDE WAS Chemically synthesized. IT IS NATURALLY FOUND IN human immunodeficiency virus type 1 (New York-5 isolate) (HIV-1).
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations, structures with the lowest energy
60
20
2D NOESY
DQF-COSY
0
ambient
298
K
structures were calculated using floating chirality.
simulated annealing
1
lowest energy
2 mM Vpr(34-51); 50 % Methanol d3, 50 % Chloroform d1
50 % Methanol d3, 50 % Chloroform d1
Brunger
structure solution
X-PLOR
3.851
Varian
collection
VNMR
5.3
SpinUp Inc.
data analysis
NDEE
Brunger
refinement
X-PLOR
3.851
600
Varian
INOVA
ACE
33
n
1
ACE
33
A
PHE
34
n
2
PHE
34
A
PRO
35
n
3
PRO
35
A
ARG
36
n
4
ARG
36
A
ILE
37
n
5
ILE
37
A
TRP
38
n
6
TRP
38
A
LEU
39
n
7
LEU
39
A
HIS
40
n
8
HIS
40
A
ASN
41
n
9
ASN
41
A
LEU
42
n
10
LEU
42
A
GLY
43
n
11
GLY
43
A
GLN
44
n
12
GLN
44
A
HIS
45
n
13
HIS
45
A
ILE
46
n
14
ILE
46
A
TYR
47
n
15
TYR
47
A
GLU
48
n
16
GLU
48
A
THR
49
n
17
THR
49
A
TYR
50
n
18
TYR
50
A
GLY
51
n
19
GLY
51
A
GLY
51
n
20
NH2
52
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
36
0.287
SIDE CHAIN
2
A
ARG
36
0.204
SIDE CHAIN
3
A
ARG
36
0.251
SIDE CHAIN
4
A
ARG
36
0.295
SIDE CHAIN
5
A
ARG
36
0.133
SIDE CHAIN
6
A
ARG
36
0.225
SIDE CHAIN
7
A
ARG
36
0.285
SIDE CHAIN
8
A
ARG
36
0.284
SIDE CHAIN
9
A
ARG
36
0.229
SIDE CHAIN
10
A
ARG
36
0.254
SIDE CHAIN
11
A
ARG
36
0.317
SIDE CHAIN
14
A
ARG
36
0.318
SIDE CHAIN
15
A
ARG
36
0.280
SIDE CHAIN
16
A
ARG
36
0.202
SIDE CHAIN
17
A
ARG
36
0.266
SIDE CHAIN
18
A
ARG
36
0.297
SIDE CHAIN
19
A
ARG
36
0.308
SIDE CHAIN
20
A
ARG
36
0.216
SIDE CHAIN
12
A
PRO
35
-49.95
157.81
13
A
PRO
35
-49.45
150.53
Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Peptide in Chloroform Methanol
1
N
N
A
ARG
36
A
ARG
4
HELX_P
A
GLY
51
A
GLY
19
1
1
16
covale
1.305
both
A
ACE
33
A
C
ACE
1
1_555
A
PHE
34
A
N
PHE
2
1_555
covale
1.305
both
A
GLY
51
A
C
GLY
19
1_555
A
NH2
52
A
N
NH2
20
1_555
VIRAL PROTEIN
HIV-1, Vpr, solution structure, chloroform, methanol, Viral protein
VPR_HV1N5
UNP
1
34
P12520
FPRIWLHNLGQHIYETYG
34
51
1KZV
34
51
P12520
A
1
2
19
BINDING SITE FOR RESIDUE NH2 A 52
A
NH2
52
Software
1
A
GLY
51
A
GLY
19
1
1_555